BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492575
Length=1221
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22890.1 | Symbols: PGR5-LIKE A | PGR5-LIKE A | chr4:1200698... 1851 0.0
AT4G11960.1 | Symbols: PGRL1B | PGR5-like B | chr4:7174886-7177... 869 0.0
> AT4G22890.1 | Symbols: PGR5-LIKE A | PGR5-LIKE A | chr4:12006986-12009520
FORWARD LENGTH=1419
Length=1419
Score = 1851 bits (1002), Expect = 0.0
Identities = 1158/1229 (94%), Gaps = 28/1229 (2%)
Strand=Plus/Plus
Query 1 AACATATCTTCAACCACAGGTTCATACTTACTG-AAAAAACAGAGG---AAAAGGAGCTC 56
|||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 90 AACACATCTTCAACCACAGGTTCATACTTACTGAAAAAAACAGAGGAAAAAAAGGAGCTC 149
Query 57 CTTTTCTCTATCTCTCTCTCAGGGAAAATGGGTAGCAAGATGTTGTTTAGTTTGACATGT 116
| ||| |||| ||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 150 CCTTT-TCTA----TCTCTAAGGGAAAATGGGTAGCAAGATGTTGTTTAGTTTGACAAGT 204
Query 117 CCTCGACTTTTCTCCGCCGTTTCTCGCAAA-C--CCAC--C--TCT-TCTTTCT-CTCCG 167
|||||||||||||||||||||||||||||| | || | | ||| || |||| |||||
Sbjct 205 CCTCGACTTTTCTCCGCCGTTTCTCGCAAACCTTCCTCTTCTTTCTCTCCTTCTCCTCCG 264
Query 168 T---CGTCGTCGAGGACTCAGTGGGCTCAGCTCACCCCTGCAAAATCGATTTCCTTGAGA 224
| |||| ||||||||||| ||| ||||||||| ||||| |||||||||||| ||||||
Sbjct 265 TCGCCGTCTTCGAGGACTCAATGGACTCAGCTCAGCCCTGGAAAATCGATTTCTTTGAGA 324
Query 225 AGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAGGTACAGGGGGAGGA 284
|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 325 AGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAGGTCCAGTAGGAGGA 384
Query 285 GACAACGTCGATAGCAATGTTTTGCCTTATTGTAGCATCAACAAGGCTGAGAAGAAGACA 344
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 385 GACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCATCAACAAGGCTGAGAAGAAAACA 444
Query 345 ATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGATGCAATCTTTCTATTACGATGGCAAA 404
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 445 ATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAATCTTTCTATTATGATGGCAAA 504
Query 405 GCGATCATGTCTAATGAAGAGTTTGATAACCTTAAAGAAGAGTTAATGTGGGAAGGAAGC 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 505 GCGATCATGTCTAATGAAGAGTTTGATAACCTTAAAGAAGAGTTAATGTGGGAAGGAAGC 564
Query 465 AGTGTTGTCATGCTAAGTTCCGATGAACAAAGGTTCTTGGAAGCTTCCATGGCTTATGTT 524
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 565 AGTGTTGTGATGCTAAGTTCCGATGAACAAAGATTCTTGGAAGCTTCCATGGCTTATGTT 624
Query 525 TCTGGAAATCCAATCTTGAATGATGAAGAATATGATAAGCTCAAACTGAAACTAAAGATT 584
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 625 TCTGGAAATCCAATCTTGAATGATGAAGAATATGATAAGCTCAAACTCAAACTAAAGATT 684
Query 585 GATGGTAGCGAAATTGTGTGCGAGGGTCCAAGATGCAGTCTCCGTAGTAAAAAGGTGTAT 644
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 685 GATGGTAGCGACATTGTGAGCGAGGGTCCAAGATGCAGTCTCCGTAGTAAAAAGGTGTAT 744
Query 645 AGTGATCTCGCTGTAGATTATTTCAAAATGTTATTGTTGAATGTTCCAGCAACCGTTGTT 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 745 AGTGATCTCGCTGTAGATTATTTCAAAATGTTATTGTTGAATGTTCCAGCAACCGTTGTT 804
Query 705 GCTCTCGGACTCTTTTTCTTCCTCGACGACATTACAGGTTTTGAGATCACATACATCATG 764
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 805 GCTCTCGGACTCTTTTTCTTCCTGGACGACATTACAGGTTTTGAGATCACATACATCATG 864
Query 765 GAGCTTTCGGAACCATACAGTTTCATATTCACGTGGTTCGCTGCCGTGCCTGTGATTGTA 824
|||||| | ||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 865 GAGCTTCCAGAACCATACAGTTTCATATTCACTTGGTTCGCTGCTGTGCCTGTGATTGTA 924
Query 825 TATCTGGCTTTATCAATCACCAAACTGATCATCAAAGACTTCTTGATCTTGAAGGGTCCT 884
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 925 TATCTGGCTTTATCAATCACCAAATTGATCATCAAGGACTTCTTGATCTTGAAGGGTCCT 984
Query 885 TGTCCGAATTGTGGAACGGAAAACACCTCCTTCTTTGGAACAATTCTGTCAATCTCCAGT 944
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 985 TGTCCGAATTGTGGAACGGAAAACACCTCCTTCTTTGGAACAATTCTGTCAATCTCCAGC 1044
Query 945 GGTGGCAAAACCAACGCTGTCAAATGCACCAACTGTGGAACCGCGATGGTGTATGACTCG 1004
|| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1045 GGCGGCAAAACCAACACTGTCAAATGCACCAACTGCGGAACCGCGATGGTGTATGACTCG 1104
Query 1005 GGTTCTCGGTTGATCACATTGCCAGAAGGAAGCCAAGCTTGAACCCTGTGAG--A--TGA 1060
|||||| ||||||||||||||||||||||||||||||||| ||||||||||| | |||
Sbjct 1105 GGTTCTAGGTTGATCACATTGCCAGAAGGAAGCCAAGCTTAAACCCTGTGAGCTAGATGA 1164
Query 1061 AGATGGAAAAAGAAGAATGGGCTTTGTCAGAAGCAAAATAGATTCGAAGTTAA-TGTATA 1119
|||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 1165 AGATGGGAAAAGAAGAATGGGTTTTGTCAGAAGCAAAATAGATTCGAAGTTAAATGTATA 1224
Query 1120 TGTAAGATCTTGCATGTTAGCTCTCTCTCCTTCACATGTTTTCTGATTTGTAAGTATTGT 1179
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1225 TGTAAGATCTTCCATGTTAGCTCTCTCTCCTTCACATGTTTTCTGATTTGTAAGTATTGT 1284
Query 1180 GTA-AA-CAATAAGAGACATATTATATGA 1206
|| || |||||||||| |||| ||||||
Sbjct 1285 GTGTAAGCAATAAGAGATATATAATATGA 1313
> AT4G11960.1 | Symbols: PGRL1B | PGR5-like B | chr4:7174886-7177840
REVERSE LENGTH=1439
Length=1439
Score = 869 bits (470), Expect = 0.0
Identities = 726/848 (86%), Gaps = 24/848 (3%)
Strand=Plus/Plus
Query 209 ATCGATTTCCT-TGAGAAGAAGAGTCTT--CTTGTTGCCTGC-TAAAGCCACAACAGAGC 264
|||||||| || | ||| ||||| ||| ||| ||||| | |||||| | || || |
Sbjct 236 ATCGATTT-CTCTCAGACGAAGA--CTTACCTTATTGCC-CCTTAAAGCTTCTACTGATC 291
Query 265 AATCAGGTACAGG-GGGAGGAG-ACAACGTCGATAGCAATG-TTTTGCCTTATTGTAGCA 321
|||||||| |||| ||| || | | || || |||||||| | |||| |||||||||||||
Sbjct 292 AATCAGGT-CAGGTGGGTGGGGAAGAA-GTTGATAGCAA-GATTTTACCTTATTGTAGCA 348
Query 322 TCAACAAGGCTGAGAAGAAG-ACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGATG 380
|||||||| ||||||| || || || |||||||||||||||||||| ||||||||||||
Sbjct 349 TCAACAAGAATGAGAAG-AGAACTATCGGTGAAATGGAACAAGAGTTCCTCCAAGCGATG 407
Query 381 CAATC-TTTCTATTACGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAACCTTAA 439
||||| ||| |||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 408 CAATCGTTT-TATTACGAAGGCAAAGCGATTATGTCTAATGAAGAGTTTGATAACCTTAA 466
Query 440 AGAAGAGTTAATGTGGGAAGGAAGCAGTGTTGTCATGCTAAGTTCCGATGAACAAAGGTT 499
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 467 AGAAGAGTTGATGTGGGAAGGAAGCAGTGTTGTCATGCTAAGTTCTGATGAACAAAGATT 526
Query 500 C-TTGGAAGCTTCCATGGCTTATGTTTCTGGAAATCCAATCTTGAATGATGAAGAATATG 558
| ||| ||||||| ||||||||||| ||||||||||||||||||| ||||||||| ||||
Sbjct 527 CCTTG-AAGCTTCAATGGCTTATGTCTCTGGAAATCCAATCTTGAGTGATGAAGAGTATG 585
Query 559 ATAAGCTCAAACTGAAACTAAAGATTGATGGTAGCGAAATTGTGTGCGAGGGTCCAAGAT 618
||||||||||| ||||||||||||| || || || || |||||||| |||||||||||||
Sbjct 586 ATAAGCTCAAAATGAAACTAAAGATGGACGGCAGTGAGATTGTGTGTGAGGGTCCAAGAT 645
Query 619 GCAGTCTCCGTAGTAAAAAGGTGTATAGTGATCTCGCTGTAGATTATTTCAAAATGTTAT 678
||||||| |||||||||||||| ||||||||||| || | ||||| ||||||||||| |
Sbjct 646 GCAGTCTTCGTAGTAAAAAGGTTTATAGTGATCTTGCCATTGATTACTTCAAAATGTTCT 705
Query 679 TGTTGAATGTTCCAGCAACCGTTGTTGCTCTCGGACTCTTTTTCTTCCTCGACGACATTA 738
|||||||||| |||||||| ||||||||||||||||| |||||||| || || |||||||
Sbjct 706 TGTTGAATGTACCAGCAACTGTTGTTGCTCTCGGACTATTTTTCTTTCTTGATGACATTA 765
Query 739 CAGGTTTTGAGATCACATACAT-CATGGAGCTTTCGGAACCATACAGTTTCATATTCACG 797
| |||||||| ||||| ||| | | | |||||| ||||||||| ||||||||| |||||
Sbjct 766 CTGGTTTTGAAATCACGTACCTGC-TCGAGCTTCCGGAACCATTCAGTTTCATTTTCACA 824
Query 798 TGGTTCGCTGCCGTGCCTGTGATTGTATATCTGGCTTTATCAATCACCAAACTGATCATC 857
||||||||||| ||||||| |||||||||||||| |||||| |||||||||||||| ||
Sbjct 825 TGGTTCGCTGCGGTGCCTGCAATTGTATATCTGGCGTTATCACTCACCAAACTGATCCTC 884
Query 858 AAAGACTTCTTGATCTTGAAGGGTCCTTGTCCGAATTGTGGAACGGAAAACACCTCCTTC 917
||||||||||||||||||||||| ||||| || || |||||||| || || || |||
Sbjct 885 AAAGACTTCTTGATCTTGAAGGGCCCTTGCCCAAACTGTGGAACAGAGAATGTATCTTTC 944
Query 918 TTTGGAACAATTCTGTCAATCTCCAGTGGTGGCAAAACCAACGCTGTCAAATGCACCAA- 976
|||||||| || || || ||| ||| || | | || |||||| |||||||||| | |
Sbjct 945 TTTGGAACGATACTATCCATCCCCAATGATAGTAACACCAACAATGTCAAATGCTC-AGG 1003
Query 977 CTGTGGAACCGCGATGGTGTATGACTCGGGTTCTCGGTTGATCACATTGCCAGAAGGAAG 1036
||||||||| | |||||| |||||||| |||||||| ||||||||||| ||||||||| |
Sbjct 1004 CTGTGGAACGGAGATGGTCTATGACTCAGGTTCTCGTTTGATCACATTACCAGAAGGAGG 1063
Query 1037 CCAAGCTT 1044
||||||
Sbjct 1064 GAAAGCTT 1071
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59989651275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5