BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492580
Length=1140
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22880.1 | Symbols: LDOX, TDS4, TT18, ANS | leucoanthocyanid... 1740 0.0
AT4G22870.2 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 532 2e-150
> AT4G22880.1 | Symbols: LDOX, TDS4, TT18, ANS | leucoanthocyanidin
dioxygenase | chr4:12004768-12006209 REVERSE LENGTH=1257
Length=1257
Score = 1740 bits (942), Expect = 0.0
Identities = 1079/1145 (94%), Gaps = 10/1145 (1%)
Strand=Plus/Plus
Query 1 ACTTGCAACCAATTACAAAAATA-AG-CTTTAAACGAAGAAGAC-AAAGAAGATGGTTGC 57
||||||||||||||||||||| | || |||||||| ||||||| |||||||||||||||
Sbjct 1 ACTTGCAACCAATTACAAAAA-AGAGTCTTTAAAC--AGAAGACTAAAGAAGATGGTTGC 57
Query 58 GGTTGAAAGAGTTGAGAGTTTAGCAAAGAGCGGAATCATATCCATTCCAAAAGAGTACAT 117
||||||||||||||||||| ||||||| |||||||||||||| ||||||||||| || ||
Sbjct 58 GGTTGAAAGAGTTGAGAGTCTAGCAAAAAGCGGAATCATATCGATTCCAAAAGAATATAT 117
Query 118 TCGTCCCAAAGAAGAGCTCGAGAGCATCAACGACGTTTTCCTAGAAGCGAAGAAAGAAGA 177
|||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 118 TCGTCCAAAAGAAGAGCTCGAGAGCATCAACGATGTTTTCCTAGAAGAGAAGAAAGAAGA 177
Query 178 CGGTCCTCAAGTTCCTACAATCGATCTACAA-AACATCGAGTCAGAAGATGAAAAGATCC 236
||||||||||||||| |||||||||||| || |||||||||||||| |||||||||||||
Sbjct 178 CGGTCCTCAAGTTCCCACAATCGATCTA-AAGAACATCGAGTCAGACGATGAAAAGATCC 236
Query 237 GTGAGACTTGCATTGAGGAACTGAAAAAGGCAGCTTTGGATTGGGGAGTGATGCATTTGA 296
|||||| ||| |||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 237 GTGAGAATTGTATTGAGGAGCTGAAAAAGGCATCTTTGGATTGGGGAGTGATGCATTTGA 296
Query 297 TCAACCATGGAATATCTGTTGATCTAATGGAGCGTGTGAAGAAAGCCGGGGAAGAGTTTT 356
|||||||||||||| | | |||||||||||||||||| ||||||||||| ||||||||||
Sbjct 297 TCAACCATGGAATACCAGCTGATCTAATGGAGCGTGTCAAGAAAGCCGGAGAAGAGTTTT 356
Query 357 TCGGTTTGTCCGTGGAAGAGAAGGAGAAGTATGCGAACGATCAAGCCACAGGAAAAATTC 416
|| ||||||| ||||||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct 357 TCAGTTTGTCTGTGGAAGAGAAGGAGAAGTATGCAAACGATCAAGCCACTGGAAAGATTC 416
Query 417 AAGGGTATGGAAGTAAGTTAGCTAACAACGCTTGCGGACAATTGGAATGGGAAGATTACT 476
|||| ||||||||||| || ||||||||||| | |||||||||||||||||||||||||
Sbjct 417 AAGGCTATGGAAGTAAATTGGCTAACAACGCGAGTGGACAATTGGAATGGGAAGATTACT 476
Query 477 TCTTTCATCTTGTGTATCCTGAAGACAAGAGAGATCTATCACTTTGGCCTACGACACCAA 536
|||||||||||| |||||||||||| ||||||||||||||| ||||||||| ||||||||
Sbjct 477 TCTTTCATCTTGCGTATCCTGAAGAGAAGAGAGATCTATCAATTTGGCCTAAGACACCAA 536
Query 537 GTGATTACATAGAAGCAACGAGTGAGTACGCGAAGTGTCTTCGTTTGTTAGCAACAAAAG 596
||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||
Sbjct 537 GTGATTACATAGAAGCAACGAGTGAGTACGCGAAGTGTCTTCGTTTGCTAGCGACTAAAG 596
Query 597 TCTTCAAGGCTCTCTCTATTGGTCTAGGCTTAGAGCCTGACCGTCTAGAGAAAGAAGTTG 656
||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||
Sbjct 597 TCTTCAAGGCTCTCTCTGTCGGTCTAGGTTTAGAGCCTGACCGTCTAGAGAAAGAAGTTG 656
Query 657 GTGGTTTAGAAGAGCTTCTTCTACAAATGAAGATAAATTACTATCCAAAATGTCCTCAGC 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 GTGGTTTAGAAGAGCTTCTTCTACAAATGAAGATAAATTACTATCCAAAATGTCCTCAGC 716
Query 717 CTGAGCTAGCACTCGGTGTGGAAGCTCACACCGATGTAAGCGCTTTAACCTTCATTCTAC 776
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 717 CTGAGCTAGCACTCGGTGTGGAAGCTCACACCGATGTAAGCGCTTTAACTTTCATTCTAC 776
Query 777 ACAACATGGTTCCCGGTTTGCAGCTATTCTACGAGGGAAAATGGGTCACTGCAAAATGTG 836
||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 777 ACAACATGGTTCCGGGTTTGCAGCTTTTCTACGAGGGCAAATGGGTCACTGCAAAATGTG 836
Query 837 TTCCTGATTCGATTGTGATGCACATTGGAGATACTTTAGAGATTCTTAGTAATGGGAAGT 896
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 837 TTCCTGATTCGATTGTGATGCACATTGGGGATACTTTGGAGATTCTTAGTAATGGGAAGT 896
Query 897 ATAAGAGTATACTTCATCGCGGGTTGGTGAATAAGGAGAAGGTTAGGATTTCTTGGGCTG 956
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 897 ATAAGAGTATACTTCATCGTGGGTTGGTGAATAAGGAGAAGGTTAGGATTTCTTGGGCTG 956
Query 957 TGTTTTGTGAGCCACCAAAGGATAAGATTGTTCTTAAGCCGTTGCCGGAGACGGTGAGTG 1016
|||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 957 TGTTTTGTGAACCCCCAAAGGATAAGATTGTTCTTAAGCCGTTGCCGGAGATGGTGAGTG 1016
Query 1017 ATGAGTCTCCGGCTAAGTTTCCTCCAAGGACATTTGCTCAACATATTGAGCATAAGTTGT 1076
||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 1017 TTGAGTCTCCGGCTAAGTTTCCTCCACGGACTTTTGCTCAACATATTGAGCATAAGTTGT 1076
Query 1077 TTGGGAAGGAACAAGAGGAATTGGTATCTGAGAAAAA-GAATTAAGTTTGTGTGTTTAGT 1135
|||||||||||||||||||||||||||| |||||||| || |||||||| |||||||| |
Sbjct 1077 TTGGGAAGGAACAAGAGGAATTGGTATCCGAGAAAAATGA-TTAAGTTTCTGTGTTTACT 1135
Query 1136 CTTAT 1140
|||||
Sbjct 1136 CTTAT 1140
> AT4G22870.2 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr4:12001884-12002801
REVERSE LENGTH=462
Length=462
Score = 532 bits (288), Expect = 2e-150
Identities = 310/321 (97%), Gaps = 0/321 (0%)
Strand=Plus/Plus
Query 800 CTATTCTACGAGGGAAAATGGGTCACTGCAAAATGTGTTCCTGATTCGATTGTGATGCAC 859
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 142 CTATTCTACGAGGGCAAATGGGTCACTGCAAAATGTGTTCCTAATTCGATTGTGATGCAC 201
Query 860 ATTGGAGATACTTTAGAGATTCTTAGTAATGGGAAGTATAAGAGTATACTTCATCGCGGG 919
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 202 ATTGGAGATACTTTGGAGATTCTTAGTAATGGGAAGTATAAGAGTATACTTCATCGTGGG 261
Query 920 TTGGTGAATAAGGAGAAGGTTAGGATTTCTTGGGCTGTGTTTTGTGAGCCACCAAAGGAT 979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 262 TTGGTGAATAAGGAGAAGGTTAGGATTTCTTGGGCTGTGTTTTGTGAGCCACCAAAGGAT 321
Query 980 AAGATTGTTCTTAAGCCGTTGCCGGAGACGGTGAGTGATGAGTCTCCGGCTAAGTTTCCT 1039
||||||||||||||||||||||| || | |||||||| ||||||||||||||||||||||
Sbjct 322 AAGATTGTTCTTAAGCCGTTGCCTGATATGGTGAGTGTTGAGTCTCCGGCTAAGTTTCCT 381
Query 1040 CCAAGGACATTTGCTCAACATATTGAGCATAAGTTGTTTGGGAAGGAACAAGAGGAATTG 1099
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 382 CCAAGGACATTTGCTCAACATATTGAGCATAAGTTGTTTGGAAAGGAACAAGAGGAATTG 441
Query 1100 GTATCTGAGAAAAAGAATTAA 1120
|| |||||||||||| |||||
Sbjct 442 GTGTCTGAGAAAAAGGATTAA 462
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55923407130
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5