BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg492583 Length=2140 Score E Sequences producing significant alignments: (Bits) Value AT4G22860.1 | Symbols: | Cell cycle regulated microtubule asso... 2944 0.0 > AT4G22860.1 | Symbols: | Cell cycle regulated microtubule associated protein | chr4:11997393-12001631 FORWARD LENGTH=2222 Length=2222 Score = 2944 bits (1594), Expect = 0.0 Identities = 2006/2191 (92%), Gaps = 83/2191 (4%) Strand=Plus/Plus Query 26 TGATATTAAAT-A-AATAT-T-TTCCATTTTGTCGC-TAAACAGAAAAATCTCTGAAACA 80 ||||||||||| | ||||| | |||||||||||||| |||||| |||||||||||||||| Sbjct 38 TGATATTAAATAATAATATATATTCCATTTTGTCGCATAAACAAAAAAATCTCTGAAACA 97 Query 81 GCGAAATTTGTGCCGTTTATTTCCTTTCCTGCCTTCTGC-TC-----CTGCTCCTGCTTC 134 |||||||||||||||||| |||||||||||||||| ||| || ||||| ||||||| Sbjct 98 GCGAAATTTGTGCCGTTTTTTTCCTTTCCTGCCTTGTGCTTCTGTTTCTGCTTCTGCTTC 157 Query 135 TTCTTCATCAGACCCAATGAATCAGAGATTCTTCTGAGAAAATTAGGGTTTTGTCTAGTC 194 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 158 CTCTTCATCAGACCCAATGAATCAGAGATTCTTCTGAGAAAATTAGGGTTTTGTCTCCTC 217 Query 195 AATTTCATTTGCTAAACTTCAGGT-TTTTCCAGAACCGATCAGTGATTTTCTTCGCTTTA 253 ||||||||||| |||||||||||| |||| || |||||||||||||||||||||| ||| Sbjct 218 AATTTCATTTGGTAAACTTCAGGTATTTTGCAAAACCGATCAGTGATTTTCTTCG-GTTA 276 Query 254 GTTGCATTTTCCC--------------AGAAAGTGATTGTGGAGG-TTT-GAGAGAGATA 297 ||||||||| ||| |||||| ||||||||||| ||| ||||||| | Sbjct 277 GTTGCATTTCCCCAAGAAAGAAAAGAGAGAAAGAGATTGTGGAGGTTTTAGAGAGAGCGA 336 Query 298 GAG-AAATGGAGATGGATGAAGATATGGAAATCGAGTCAATGGTGTTTGAGGTTAAAGAG 356 | | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 337 GCGAAAATGGAGATGGATGAAGATATGGAAATCGAGCCAATGGTGTTTGAGGTTAAAGAG 396 Query 357 ATCGATTTGGAGTATGAATTTGATGCGGCGAGGTGGTACGATTTTACTCGAGAGGAGTTA 416 |||||| ||||||| ||||||||||||||||||||||||||||||||||| || |||||| Sbjct 397 ATCGATCTGGAGTACGAATTTGATGCGGCGAGGTGGTACGATTTTACTCGGGAAGAGTTA 456 Query 417 CCGGCGGAGTCTCAAGCCGCTGAGTTCTGGTTTCATTCTGCTCCGTCGTACGCGCCTTCT 476 |||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 457 CCGGAGGAGTCTCAAGCCGCTGAGTTCTGGTTTCACTCTGCTCCGTCGTACGCTCCTTCT 516 Query 477 CCTTTTGTAACAAAACTGTTACTTAGAGAGGAGGTTTATGATGACAAGACTGAGGCATCT 536 ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| Sbjct 517 CCTTTTGTAACAAAACTGTTACTAAGAGAGGAGGTTTATGATGACAAGACGGAGGCATCT 576 Query 537 ACGAGATCAGAGGAGGAGGAACTCGCAGCAGATGTTTGTGATAAGTATAAAGGAATCTTT 596 |||||||||||||| |||||| ||| |||||||||||||||||||||||||||| |||| Sbjct 577 ACGAGATCAGAGGATGAGGAAGTCGTTGCAGATGTTTGTGATAAGTATAAAGGAACCTTT 636 Query 597 CAGCAACCAAATCATTTAGCTTCAGATTTGAATAAGACAGGAAGTAGAATGCGTTCTGGG 656 |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| Sbjct 637 CAGCAACCAAATCATTTAGCCACAGATTTTAATAAGACAGGAAGTAGAATGCGTTCTGGG 696 Query 657 ATTTTTTCCT-----C-TCAACAATGTAGTAATTTGAAGAAAGTTCCAAATCAGCCTATA 710 |||||||||| | |||||| || |||||||||||||||||||||||||||| ||| Sbjct 697 ATTTTTTCCTCCCAACAACAACAAGGTTGTAATTTGAAGAAAGTTCCAAATCAGCCCATA 756 Query 711 TGGAAAGGGCCGACGGTGAGCAATCACAAACACACTGATAAACCAAAATTCCGAGCTAAG 770 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 757 TGGAAAGGGCCGACGGTTAGCAATCACAAACACACTGATAAACCAAAATTCCGAGCTAAG 816 Query 771 TCCAGTATCAGACCAACTCCAAGGAGCTCAACGTTAATGAGACCTACTGCTAGCCAGTTA 830 || || |||||||||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 817 TCAAGCATCAGACCAACTCCAAGGAGCTCAACATTAATGAGACCTACTGCTAGCCAATTA 876 Query 831 GCAAAACAAAATATTGCCAGTAAATTCCATATGCAAGTGGATCAAAGTCATGATAAAGGA 890 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 877 GCAAAACAAAATAATGCCAGTAAATTCCATATGCAAGTGGATCAAAGTCATGATAAAGGA 936 Query 891 AGTTGTGGGACATCTGGAACCGAAGTTCAAGCGTCTAAAAGACAGAAGCTTGATGGAGGT 950 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 937 AGTTGTGGGACATCTGGGACTGAAGTTCAAGCGTCTAAAAGACAGAAGCTTGATGGAGGT 996 Query 951 CTTCTTCGTAAGGTTGCTGATACAAAGCAGGAAATGAGTTTTGTCCACAAGATACCCAAG 1010 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 997 CTTCTTCGTAAGGTTGCTGATACAAAGCAGGAAATGAGTTTTGTCCACAAGATCCCCAAG 1056 Query 1011 AAGGATACAACTCTTGATAGAAAC-TTACAACATGTCAGGACAAAGATTACTATCCCACA 1069 ||||||||||||||||||| |||| | ||||||| |||||||||||||||||||||||| Sbjct 1057 AAGGATACAACTCTTGATAAAAACGCT-CAACATGCCAGGACAAAGATTACTATCCCACA 1115 Query 1070 AGAGCCTGATTTTGCTACGTCACAGAGGGCTCACAGGATACGGCACAAGAATGACGCGAA 1129 ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 1116 GGAGCCTGATTTTGCTACATCACAGAGGGCTCACAGGATACGGCACAAGAATGATGCGAA 1175 Query 1130 GTTAGAACAGGACTCAA-CAACTGTATATAGATTCAAAGCACGCCCATTTAACCGAAAGA 1188 ||||||||| || ||| || |||||||||||||||||||||| |||||||||||||||| Sbjct 1176 GTTAGAACAAGA-GCAACCAGCTGTATATAGATTCAAAGCACGTCCATTTAACCGAAAGA 1234 Query 1189 TATTTGAGGCTCCCTCATTGCCCATCCGGAAAAAGAGCACTCCGAAACTACCAGAATTTC 1248 ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1235 TATTTGATGCTCCTTCATTGCCCATCCGGAAAAAGAGCACTCCGAAACTACCAGAATTCC 1294 Query 1249 AAGAATTTCATTTGAAGACTTCAGAAAGGGCTATGCAACATTCATCAGCAGTAACAACAA 1308 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1295 AAGAATTTCATTTGAAGACTTCAGAAAGGGCTATGCAACATTCATCAGCAGTAACAACAC 1354 Query 1309 GTTCTCATGCATATAAGGAGTTAGACAAATCTATTCTAACTGATATGCTTGACGGTGATA 1368 | |||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||| Sbjct 1355 GGTCTCATGCGTATAAGGAGTCAGACAAATCTATTATAACTGATATGCTTGACGGTGATA 1414 Query 1369 ACAAG-GAAAGTAAGAGACCAAGCGTTATGGATATATCAAAACATGATGTCTCAGAAGGA 1427 || || ||||||| ||||||||||| |||||||||||| || |||||||||||||||||| Sbjct 1415 AC-AGAGAAAGTAGGAGACCAAGCGGTATGGATATATCTAAGCATGATGTCTCAGAAGGA 1473 Query 1428 AGTCACGTTTTTAAAGCTCGTCCTTTGAACAAGAAGATACTTTCAAGCAGAGGAGACATG 1487 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1474 AGTCACGTTTTTAAAGCTCGTCCTCTGAACAAGAAGATACTTTCAAGCAGAGGAGACATG 1533 Query 1488 GGCATTTTCAAAAATAGCAAGCGAGAAACAACAGTACCTTTGGAGTTTAGTTTTCATTCG 1547 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1534 GGCATTTTCAAAAATAGCAAGCGAGAAACAACAGTACCTTTGGAGTTTAGTTTTCATTCG 1593 Query 1548 GAAAAGAGAGTTCAACCAGATTTACCGACAGACCTTTTCAGCAAGCTCTCCATCAAATCC 1607 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1594 GAAAAGAGAGTTCAACCAGATTTACCGACAGACCTTTTCAGCAAGCTCTCCATAAAATCC 1653 Query 1608 GAGCTCCAGCCAAACGATGGATCTCGCACAAGATTATTTCAACCAAAGGTGTCAAAGGAA 1667 ||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1654 GAGATACAGCCAAACGATGGATCTCGCACAAGATTATTTCAACCAAAGGTCTCAAAGGAA 1713 Query 1668 AATAGAATGAACTCTTTCCAAGCAAGGAATGAGGTACCAAGATTGGCAGCGGTAAAACCA 1727 |||||||| ||||||||||||||||||||||||||| ||||| ||||||||| ||||||| Sbjct 1714 AATAGAATAAACTCTTTCCAAGCAAGGAATGAGGTAACAAGAATGGCAGCGGCAAAACCA 1773 Query 1728 GTCTCTTCAGCTGGACAACAGGTACAATTTGGTAATAGTGGAATAACTCCGGAAACAAAC 1787 |||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||| Sbjct 1774 GTCTCTTCAGCTGGACAACAAATGCAATTTGGTAATAGTGGAATAACTCCTGAAACAAAC 1833 Query 1788 CAGCAATGGACAGCTAGGAGGTACTTAGGCATTCGCTGATGGTA-CAGAACGCATTTGTA 1846 ||||||||||||||||||||| |||||||||||||||||||| | || |||||||||||| Sbjct 1834 CAGCAATGGACAGCTAGGAGGAACTTAGGCATTCGCTGATGG-ATCAAAACGCATTTGTA 1892 Query 1847 GTATCTGGAATCATCTCCTTATGT--A--C--A-----------T-TCA----GA--AT- 1881 ||||||||| |||| ||||||||| | | | | ||| || || Sbjct 1893 GTATCTGGATTCATGTCCTTATGTACATTCAGATTTGGTTCTCTTCTCAGTCTGATCATG 1952 Query 1882 TGGT-T--CTTCTTCAAC-CTAAAGCTAACATTTTGAAATCC-AAAGAAGTAGACCAATT 1936 |||| | || || |||| | ||||||||||||||||||||| ||||||| ||| ||||| Sbjct 1953 TGGTATAACTCCTCCAACGC-AAAGCTAACATTTTGAAATCCAAAAGAAGCAGAACAATT 2011 Query 1937 CGTCTTGAGGACAAAGGAAGAAAGGAGAAAGC-AAAGCAAACCGCATTCTTCAGTTTCTC 1995 | |||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||| Sbjct 2012 CATCTTGAGGACAAGGGAAGAAAGGAGAAAGCAAAAGCAAACCACATTCTTCAGTTTCTC 2071 Query 1996 ATAATATGAGCCACATAATGCATCT--C-CTCTC-TTTGCTTTCTTCGGCATCTGTTTTC 2051 || |||| ||||| || ||||||| | ||||| |||||||||||||| |||||||||| Sbjct 2072 ATTATATTAGCCATGTATTGCATCTCCCTCTCTCTTTTGCTTTCTTCGGTATCTGTTTTC 2131 Query 2052 TTACA-TTAGTATCATAAAAAGGAAAAACAGAAAATGTAAATCAGAAATACTTTCAAGTT 2110 ||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||| Sbjct 2132 TTACATTTAGTATCATAAAACGGATAAACAGAAAATGTAAATCAGAAATACTTTCAAGTT 2191 Query 2111 CTTAATACATA-ATGTGGTTCATAGATCTAC 2140 || |||||| | ||||||||||||||||||| Sbjct 2192 CTCAATACA-ACATGTGGTTCATAGATCTAC 2221 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 106123952130 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5