BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492583
Length=2140
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22860.1 | Symbols: | Cell cycle regulated microtubule asso... 2944 0.0
> AT4G22860.1 | Symbols: | Cell cycle regulated microtubule associated
protein | chr4:11997393-12001631 FORWARD LENGTH=2222
Length=2222
Score = 2944 bits (1594), Expect = 0.0
Identities = 2006/2191 (92%), Gaps = 83/2191 (4%)
Strand=Plus/Plus
Query 26 TGATATTAAAT-A-AATAT-T-TTCCATTTTGTCGC-TAAACAGAAAAATCTCTGAAACA 80
||||||||||| | ||||| | |||||||||||||| |||||| ||||||||||||||||
Sbjct 38 TGATATTAAATAATAATATATATTCCATTTTGTCGCATAAACAAAAAAATCTCTGAAACA 97
Query 81 GCGAAATTTGTGCCGTTTATTTCCTTTCCTGCCTTCTGC-TC-----CTGCTCCTGCTTC 134
|||||||||||||||||| |||||||||||||||| ||| || ||||| |||||||
Sbjct 98 GCGAAATTTGTGCCGTTTTTTTCCTTTCCTGCCTTGTGCTTCTGTTTCTGCTTCTGCTTC 157
Query 135 TTCTTCATCAGACCCAATGAATCAGAGATTCTTCTGAGAAAATTAGGGTTTTGTCTAGTC 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 158 CTCTTCATCAGACCCAATGAATCAGAGATTCTTCTGAGAAAATTAGGGTTTTGTCTCCTC 217
Query 195 AATTTCATTTGCTAAACTTCAGGT-TTTTCCAGAACCGATCAGTGATTTTCTTCGCTTTA 253
||||||||||| |||||||||||| |||| || |||||||||||||||||||||| |||
Sbjct 218 AATTTCATTTGGTAAACTTCAGGTATTTTGCAAAACCGATCAGTGATTTTCTTCG-GTTA 276
Query 254 GTTGCATTTTCCC--------------AGAAAGTGATTGTGGAGG-TTT-GAGAGAGATA 297
||||||||| ||| |||||| ||||||||||| ||| ||||||| |
Sbjct 277 GTTGCATTTCCCCAAGAAAGAAAAGAGAGAAAGAGATTGTGGAGGTTTTAGAGAGAGCGA 336
Query 298 GAG-AAATGGAGATGGATGAAGATATGGAAATCGAGTCAATGGTGTTTGAGGTTAAAGAG 356
| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 337 GCGAAAATGGAGATGGATGAAGATATGGAAATCGAGCCAATGGTGTTTGAGGTTAAAGAG 396
Query 357 ATCGATTTGGAGTATGAATTTGATGCGGCGAGGTGGTACGATTTTACTCGAGAGGAGTTA 416
|||||| ||||||| ||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 397 ATCGATCTGGAGTACGAATTTGATGCGGCGAGGTGGTACGATTTTACTCGGGAAGAGTTA 456
Query 417 CCGGCGGAGTCTCAAGCCGCTGAGTTCTGGTTTCATTCTGCTCCGTCGTACGCGCCTTCT 476
|||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 457 CCGGAGGAGTCTCAAGCCGCTGAGTTCTGGTTTCACTCTGCTCCGTCGTACGCTCCTTCT 516
Query 477 CCTTTTGTAACAAAACTGTTACTTAGAGAGGAGGTTTATGATGACAAGACTGAGGCATCT 536
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 517 CCTTTTGTAACAAAACTGTTACTAAGAGAGGAGGTTTATGATGACAAGACGGAGGCATCT 576
Query 537 ACGAGATCAGAGGAGGAGGAACTCGCAGCAGATGTTTGTGATAAGTATAAAGGAATCTTT 596
|||||||||||||| |||||| ||| |||||||||||||||||||||||||||| ||||
Sbjct 577 ACGAGATCAGAGGATGAGGAAGTCGTTGCAGATGTTTGTGATAAGTATAAAGGAACCTTT 636
Query 597 CAGCAACCAAATCATTTAGCTTCAGATTTGAATAAGACAGGAAGTAGAATGCGTTCTGGG 656
|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 637 CAGCAACCAAATCATTTAGCCACAGATTTTAATAAGACAGGAAGTAGAATGCGTTCTGGG 696
Query 657 ATTTTTTCCT-----C-TCAACAATGTAGTAATTTGAAGAAAGTTCCAAATCAGCCTATA 710
|||||||||| | |||||| || |||||||||||||||||||||||||||| |||
Sbjct 697 ATTTTTTCCTCCCAACAACAACAAGGTTGTAATTTGAAGAAAGTTCCAAATCAGCCCATA 756
Query 711 TGGAAAGGGCCGACGGTGAGCAATCACAAACACACTGATAAACCAAAATTCCGAGCTAAG 770
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 757 TGGAAAGGGCCGACGGTTAGCAATCACAAACACACTGATAAACCAAAATTCCGAGCTAAG 816
Query 771 TCCAGTATCAGACCAACTCCAAGGAGCTCAACGTTAATGAGACCTACTGCTAGCCAGTTA 830
|| || |||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 817 TCAAGCATCAGACCAACTCCAAGGAGCTCAACATTAATGAGACCTACTGCTAGCCAATTA 876
Query 831 GCAAAACAAAATATTGCCAGTAAATTCCATATGCAAGTGGATCAAAGTCATGATAAAGGA 890
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 877 GCAAAACAAAATAATGCCAGTAAATTCCATATGCAAGTGGATCAAAGTCATGATAAAGGA 936
Query 891 AGTTGTGGGACATCTGGAACCGAAGTTCAAGCGTCTAAAAGACAGAAGCTTGATGGAGGT 950
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 937 AGTTGTGGGACATCTGGGACTGAAGTTCAAGCGTCTAAAAGACAGAAGCTTGATGGAGGT 996
Query 951 CTTCTTCGTAAGGTTGCTGATACAAAGCAGGAAATGAGTTTTGTCCACAAGATACCCAAG 1010
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 997 CTTCTTCGTAAGGTTGCTGATACAAAGCAGGAAATGAGTTTTGTCCACAAGATCCCCAAG 1056
Query 1011 AAGGATACAACTCTTGATAGAAAC-TTACAACATGTCAGGACAAAGATTACTATCCCACA 1069
||||||||||||||||||| |||| | ||||||| ||||||||||||||||||||||||
Sbjct 1057 AAGGATACAACTCTTGATAAAAACGCT-CAACATGCCAGGACAAAGATTACTATCCCACA 1115
Query 1070 AGAGCCTGATTTTGCTACGTCACAGAGGGCTCACAGGATACGGCACAAGAATGACGCGAA 1129
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1116 GGAGCCTGATTTTGCTACATCACAGAGGGCTCACAGGATACGGCACAAGAATGATGCGAA 1175
Query 1130 GTTAGAACAGGACTCAA-CAACTGTATATAGATTCAAAGCACGCCCATTTAACCGAAAGA 1188
||||||||| || ||| || |||||||||||||||||||||| ||||||||||||||||
Sbjct 1176 GTTAGAACAAGA-GCAACCAGCTGTATATAGATTCAAAGCACGTCCATTTAACCGAAAGA 1234
Query 1189 TATTTGAGGCTCCCTCATTGCCCATCCGGAAAAAGAGCACTCCGAAACTACCAGAATTTC 1248
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1235 TATTTGATGCTCCTTCATTGCCCATCCGGAAAAAGAGCACTCCGAAACTACCAGAATTCC 1294
Query 1249 AAGAATTTCATTTGAAGACTTCAGAAAGGGCTATGCAACATTCATCAGCAGTAACAACAA 1308
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1295 AAGAATTTCATTTGAAGACTTCAGAAAGGGCTATGCAACATTCATCAGCAGTAACAACAC 1354
Query 1309 GTTCTCATGCATATAAGGAGTTAGACAAATCTATTCTAACTGATATGCTTGACGGTGATA 1368
| |||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 1355 GGTCTCATGCGTATAAGGAGTCAGACAAATCTATTATAACTGATATGCTTGACGGTGATA 1414
Query 1369 ACAAG-GAAAGTAAGAGACCAAGCGTTATGGATATATCAAAACATGATGTCTCAGAAGGA 1427
|| || ||||||| ||||||||||| |||||||||||| || ||||||||||||||||||
Sbjct 1415 AC-AGAGAAAGTAGGAGACCAAGCGGTATGGATATATCTAAGCATGATGTCTCAGAAGGA 1473
Query 1428 AGTCACGTTTTTAAAGCTCGTCCTTTGAACAAGAAGATACTTTCAAGCAGAGGAGACATG 1487
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1474 AGTCACGTTTTTAAAGCTCGTCCTCTGAACAAGAAGATACTTTCAAGCAGAGGAGACATG 1533
Query 1488 GGCATTTTCAAAAATAGCAAGCGAGAAACAACAGTACCTTTGGAGTTTAGTTTTCATTCG 1547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1534 GGCATTTTCAAAAATAGCAAGCGAGAAACAACAGTACCTTTGGAGTTTAGTTTTCATTCG 1593
Query 1548 GAAAAGAGAGTTCAACCAGATTTACCGACAGACCTTTTCAGCAAGCTCTCCATCAAATCC 1607
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1594 GAAAAGAGAGTTCAACCAGATTTACCGACAGACCTTTTCAGCAAGCTCTCCATAAAATCC 1653
Query 1608 GAGCTCCAGCCAAACGATGGATCTCGCACAAGATTATTTCAACCAAAGGTGTCAAAGGAA 1667
||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1654 GAGATACAGCCAAACGATGGATCTCGCACAAGATTATTTCAACCAAAGGTCTCAAAGGAA 1713
Query 1668 AATAGAATGAACTCTTTCCAAGCAAGGAATGAGGTACCAAGATTGGCAGCGGTAAAACCA 1727
|||||||| ||||||||||||||||||||||||||| ||||| ||||||||| |||||||
Sbjct 1714 AATAGAATAAACTCTTTCCAAGCAAGGAATGAGGTAACAAGAATGGCAGCGGCAAAACCA 1773
Query 1728 GTCTCTTCAGCTGGACAACAGGTACAATTTGGTAATAGTGGAATAACTCCGGAAACAAAC 1787
|||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||
Sbjct 1774 GTCTCTTCAGCTGGACAACAAATGCAATTTGGTAATAGTGGAATAACTCCTGAAACAAAC 1833
Query 1788 CAGCAATGGACAGCTAGGAGGTACTTAGGCATTCGCTGATGGTA-CAGAACGCATTTGTA 1846
||||||||||||||||||||| |||||||||||||||||||| | || ||||||||||||
Sbjct 1834 CAGCAATGGACAGCTAGGAGGAACTTAGGCATTCGCTGATGG-ATCAAAACGCATTTGTA 1892
Query 1847 GTATCTGGAATCATCTCCTTATGT--A--C--A-----------T-TCA----GA--AT- 1881
||||||||| |||| ||||||||| | | | | ||| || ||
Sbjct 1893 GTATCTGGATTCATGTCCTTATGTACATTCAGATTTGGTTCTCTTCTCAGTCTGATCATG 1952
Query 1882 TGGT-T--CTTCTTCAAC-CTAAAGCTAACATTTTGAAATCC-AAAGAAGTAGACCAATT 1936
|||| | || || |||| | ||||||||||||||||||||| ||||||| ||| |||||
Sbjct 1953 TGGTATAACTCCTCCAACGC-AAAGCTAACATTTTGAAATCCAAAAGAAGCAGAACAATT 2011
Query 1937 CGTCTTGAGGACAAAGGAAGAAAGGAGAAAGC-AAAGCAAACCGCATTCTTCAGTTTCTC 1995
| |||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 2012 CATCTTGAGGACAAGGGAAGAAAGGAGAAAGCAAAAGCAAACCACATTCTTCAGTTTCTC 2071
Query 1996 ATAATATGAGCCACATAATGCATCT--C-CTCTC-TTTGCTTTCTTCGGCATCTGTTTTC 2051
|| |||| ||||| || ||||||| | ||||| |||||||||||||| ||||||||||
Sbjct 2072 ATTATATTAGCCATGTATTGCATCTCCCTCTCTCTTTTGCTTTCTTCGGTATCTGTTTTC 2131
Query 2052 TTACA-TTAGTATCATAAAAAGGAAAAACAGAAAATGTAAATCAGAAATACTTTCAAGTT 2110
||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 2132 TTACATTTAGTATCATAAAACGGATAAACAGAAAATGTAAATCAGAAATACTTTCAAGTT 2191
Query 2111 CTTAATACATA-ATGTGGTTCATAGATCTAC 2140
|| |||||| | |||||||||||||||||||
Sbjct 2192 CTCAATACA-ACATGTGGTTCATAGATCTAC 2221
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106123952130
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5