BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492585
Length=1173
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22850.1 | Symbols: | SNARE associated Golgi protein family... 1648 0.0
> AT4G22850.1 | Symbols: | SNARE associated Golgi protein family
| chr4:11994014-11996229 FORWARD LENGTH=1359
Length=1359
Score = 1648 bits (892), Expect = 0.0
Identities = 1092/1184 (92%), Gaps = 32/1184 (3%)
Strand=Plus/Plus
Query 1 ACAAATCGAGGAGAAAACTTCCACAAATTTG-CTCTCTTTGTTTCCCACACACCAATTTG 59
||||||| ||||||||||||||||||| ||| |||||||| ||||| |||||||||||||
Sbjct 1 ACAAATCAAGGAGAAAACTTCCACAAA-TTGTCTCTCTTTCTTTCCTACACACCAATTTG 59
Query 60 tttttttGTTTGGTTCGATTGCATTCATCTTTTTCGAATTTCCGATCACTGGATTTTCCC 119
|||| || || ||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 60 -TTTTGTGATTCTTTCGATTGCATTCTTCTTTTTCGAATTCCCGATCACTGGATTTTCCC 118
Query 120 GTTTAATCGGAAAAATCCAGTGTATTAGGTTTTGCTCAGTGTTATCTCTTTCTGTTTCTG 179
|||||| ||| ||||||||||| ||||| |||| | ||||||||||| ||| || |
Sbjct 119 GTTTAACCGG-AAAATCCAGTGGATTAGATTTTACCCAGTGTTATCT-TTT-TG-----G 170
Query 180 AATTGCATTCGATGACTGCTCCGGAGGATGAAAAGCCGGTTCTTGAGCTGCGGGTGAGAG 239
|||| |||||||||||| | ||||||| ||||| |||||||||||||||| ||||||||
Sbjct 171 -ATTGGATTCGATGACTGTTACGGAGGACGAAAAACCGGTTCTTGAGCTGCTGGTGAGAG 229
Query 240 TCGAAGACGACGACAACGATGAGAAAAAGGGTCCTTATGTGAAATTAAGTGAGGGTTTAG 299
| | | | |||| |||||||| |||||| |||||||||||||| ||||||| |||||
Sbjct 230 TTG-A-A-GACG---ACGATGAG--AAAGGG-CCTTATGTGAAATTGAGTGAGGTTTTAG 280
Query 300 AG--A----AA-AACCa-agaagaagaa-gaagaagaaaagaTTGATTCGTCGCGGTTTT 350
|| | || || || || || |||| ||||||||||||| |||||||||||||||||
Sbjct 281 AGAAAGGTCAAGAATCAGAGCAGGAGAAGGAAGAAGAAAAGACTGATTCGTCGCGGTTTT 340
Query 351 GGTTTTGGGTCAAGCTTTCTCTTTTATTCGCCTTTCTTGCTGCATTGGCTATTGTGGGTT 410
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 341 GGTTTTGGGTCAAGCTTTCTCTTTTATTCGCCTTTCTTGCTGCATTGGCTGTTGTGGGTT 400
Query 411 ACATATGGATCGGTCCATTGATCATGGATAAGGAGCTTATCCCGCTTATACAATGGGAGA 470
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 401 ACATTTGGATCGGTCCATTGATCATGGATAAGGAGCTTATACCGCTTATACAATGGGAGA 460
Query 471 TAAGAACTTTTACACATCCTGTGTGCGGTCTTCTTGTCTTTGCGTCCGTGGCAATATTTC 530
|| |||||||||||||||||||||| ||||||||||| ||||| || ||||| |||||||
Sbjct 461 TACGAACTTTTACACATCCTGTGTGTGGTCTTCTTGTTTTTGCATCAGTGGCGATATTTC 520
Query 531 CGACTATACTTCTTCCATCTACACCATCAATGTGGATTGCTGGGATGACTTTTGGTTATG 590
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 521 CAACTATACTTCTTCCATCTACACCATCAATGTGGATTGCTGGGATGACTTTTGGTTATG 580
Query 591 GCTATGGGTTTCTACTCATTATCTCAGCTGCAGCTGTTGGTGTATCGCTACCTTACTTTA 650
||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 581 GCTATGGCTTTCTACTTATTATCTCAGCTGCAGCTGTTGGTGTTTCGCTACCTTACTTTA 640
Query 651 TTGGACAACTTTTCTGCCACAAAATTCAAGGATGGTTAGAAAGATATCCTGACCAAGCAG 710
|||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 641 TTGGACAACTCTTCTGCCACAAAATTCAAGGATGGCTAGAAAGATATCCTGATCAAGCAG 700
Query 711 CCGTATTAAGAGCTGCTGGTGAAGGGAATTGGCTTCACCAATTTCGATTAGTAACCTTAA 770
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 701 CCGTATTAAGAGCTGCTGGTGAAGGGAATTGGCTTCACCAATTTCTATTAGTAACCTTAA 760
Query 771 TCCGGATTTCTCCATTCCCTTACATTCTTTATAACTACTGTTCTGTAGCAACTCGTGTTA 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 761 TCCGGATTTCTCCATTCCCTTACATTCTTTATAACTACTGTTCTGTAGCAACTCGTGTTA 820
Query 831 AGTATGGTCCTTACATCACAGGCTCTCTCTTAGGCATGGTTCCTGAGGTATTTGTCGCAA 890
||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||
Sbjct 821 AGTATGGTCCTTACATCACGGGCTCTCTCTTAGGCATGGTGCCTGAGGTTTTTGTCGCAA 880
Query 891 TCTACACAGGGATTCTTGTAAGGACTTTAGCAGAAGCATCTTCTGCAGAAAAACAGGGTC 950
||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 881 TCTACACAGGGATACTTGTAAGGACATTAGCAGAAGCATCTTCTGCAGAAGAACAGGGTC 940
Query 951 TCTCGGTTACACAGGTTATTCTCAACATTCTCGGCTTTTTAGCAACAGTGGCTACAACAA 1010
||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 941 TCTCGGTAACACAGGTGATTCTCAACATTCTCGGCTTTTTAGCAACAGTGGCTACAACGA 1000
Query 1011 TTCTCATCACAAAGTATGCGAAAAGACAGCTGGAGACTATGAAGAAAGAAGAGGAAGTAT 1070
||||||||||||||||||||||||||||||||||||| ||||||||||| || |||| ||
Sbjct 1001 TTCTCATCACAAAGTATGCGAAAAGACAGCTGGAGACGATGAAGAAAGAGGACGAAGCAT 1060
Query 1071 TGTTGCAGTAAAACTGTAAAACCACGTGACAAACTCTGAGCTTCTTTTGTCTCTCTGCT- 1129
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1061 TGTTGCAGTAAAACTGTAAAACCACGTGACAAACTCTGAGCTGCTTTTGTCTCTCTGCTA 1120
Query 1130 CTTTTATCTGAAACATCTCTTGTCTTCTTACACAGTACAGGTCT 1173
|||| |||||||||| | ||||||||||||||||||||||||||
Sbjct 1121 CTTT-ATCTGAAACACCCCTTGTCTTCTTACACAGTACAGGTCT 1163
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57580025115
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5