BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492588
Length=1542
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22810.1 | Symbols: | Predicted AT-hook DNA-binding family ... 2242 0.0
AT4G12050.1 | Symbols: | Predicted AT-hook DNA-binding family ... 593 1e-168
> AT4G22810.1 | Symbols: | Predicted AT-hook DNA-binding family
protein | chr4:11984140-11985702 FORWARD LENGTH=1563
Length=1563
Score = 2242 bits (1214), Expect = 0.0
Identities = 1458/1569 (93%), Gaps = 43/1569 (3%)
Strand=Plus/Plus
Query 1 TTTCACTTCCTCCAACTCAAAGAAAGAGATCAGAAGCTACAGATATACAACAAAACAAGG 60
||||||||||||||||||||||||||||||||||||||| || |||||| |||||| |||
Sbjct 11 TTTCACTTCCTCCAACTCAAAGAAAGAGATCAGAAGCTATAGCTATACACCAAAACTAGG 70
Query 61 TATAGAGAGAGAAACCCTACAAAATCAAAAGGAAGAAGAGACGAAGATGAAGAAGATCCA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 71 TATAGAGAGAGAAACCCTACAAAATCAAAAGGAAGAAGAGACGAAGATGAAGAAGATCCA 130
Query 121 GCTTGGATTTCGTTGTTCATCATTACTACTCTCTTTCTTCTTCTAGCTAGCTAGTTTTGA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 131 GCTTGGATTTCGTTGTTCATCATTACTACTCTCTTTCTTCTTCTAGCTAGCTAGTTTTGA 190
Query 181 CAACAAAATAAGAAGC-aaaaaaaggtcaaagtaaaaaaGATCTGTTCTTAGATCACTCT 239
|| ||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||
Sbjct 191 CAGCAAAATAAGAAGCAAAAAAAAGGTC-AACTAAAAAAGATCTGTTCTTAGATCACTCT 249
Query 240 CTTC-TC--TTTTTGATCCAATTCCACAATTGAATCATAGATCAT-G-----G----A-- 284
|||| || |||||||||||||||||| ||||||||||||||||| | | |
Sbjct 250 CTTCTTCTTTTTTTGATCCAATTCCACCATTGAATCATAGATCATGGATCCAGTACAATC 309
Query 285 TCATGGAACACAAAACTCTCTACCTGCTCCTTTCCACGCAAGAGACTTTCAATTACATCT 344
||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 310 TCATGGATCACAAAGCTCTCTACCTCCTCCTTTCCACGCAAGAGACTTTCAATTACATCT 369
Query 345 CCAACAACAACAACAAGAGTTCTTCCTCCACCACCACCAGCAACAAAGAAACCAAACCGA 404
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 370 TCAACAACAGCAACAAGAGTTCTTCCTCCACCATCACCAGCAACAAAGAAACCAAACCGA 429
Query 405 TGATGATCAACAAGGAGGATCAGGAGGAAACCGACAAATCAAGATGGATCGTGAAGAGAC 464
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 TGGTGACCAACAAGGAGGATCAGGAGGAAACCGACAAATCAAGATGGATCGTGAAGAGAC 489
Query 465 AAGCGACAACAT------C---GCTAACAACAGCGGTAGTGAAGGTAAGGACATAGATTT 515
|||||||||||| | |||||||||||||||||||||||||| ||||||||| |
Sbjct 490 AAGCGACAACATAGACAACATAGCTAACAACAGCGGTAGTGAAGGTAAAGACATAGATAT 549
Query 516 ACACGGAGGTTCGGGAGAAGGAGGCGGCGGCTCTGGAGGAGATCATCAGATGACAAGAAG 575
|||||| ||||| ||||||||||| || ||||| ||||||||||||||||||||||||||
Sbjct 550 ACACGGTGGTTCAGGAGAAGGAGGTGGTGGCTCCGGAGGAGATCATCAGATGACAAGAAG 609
Query 576 ACCAAGAGGAAGACCAGCTGGATCCAAGAACAAACCAAAACCACCGATTATCGTCACGCG 635
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||
Sbjct 610 ACCAAGAGGAAGACCAGCGGGATCCAAGAACAAACCAAAACCACCGATTATCATCACACG 669
Query 636 GGACAGCGCAAACGCGCTTAGAACCCACGTGATGGAGATTGGAGACGGATGTGATCT-AG 694
||||||||||||||||||||||||||||||||||||||| ||||| || || || || ||
Sbjct 670 GGACAGCGCAAACGCGCTTAGAACCCACGTGATGGAGATCGGAGATGGCTGCGA-CTTAG 728
Query 695 TCGAGAGCGTGGCCACTTTCGCAAGAAGACGCCAACGCGGCGTTTGCGTTATGAGCGGTA 754
|||| ||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 729 TCGAAAGCGTTGCCACTTTTGCACGAAGACGCCAACGCGGCGTTTGCGTTATGAGCGGTA 788
Query 755 CTGGAAACGTTACTAACGTCACTATACGTCAGCCTGGATCTCATCCTTCTCCTGGCTCGG 814
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 789 CTGGAAATGTTACTAACGTCACTATACGTCAGCCTGGATCTCATCCTTCTCCTGGCTCGG 848
Query 815 TCGTTAGTCTTCACGGAAGGTTCGAGATtctctctctctctGGCTCTTTTCTCCCTCCGC 874
| ||||||||||||||||||||||||||||| |||||||| || |||||||||||||| |
Sbjct 849 TAGTTAGTCTTCACGGAAGGTTCGAGATTCTATCTCTCTCAGGATCTTTTCTCCCTCCTC 908
Query 875 CGGCTCCTCCTACAGCCACCGGATTGAGTGTTTACCTCGCCGGAGGACAAGGACAAGTAG 934
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
Sbjct 909 CGGCTCCTCCTACAGCCACCGGATTGAGTGTTTACCTCGCTGGAGGACAAGGACAGGTGG 968
Query 935 TCGGTGGAAGCGTGGTTGGTCCATTGTTGTGTGCTGGTCCTGTTGTTGTTATGGCTGCGT 994
| || |||||||| |||||||| ||||| |||||||||||||| ||||| ||||||||||
Sbjct 969 TTGGAGGAAGCGTAGTTGGTCCGTTGTTATGTGCTGGTCCTGTCGTTGTCATGGCTGCGT 1028
Query 995 CTTTTAGCAATGCGGCGTACGAGAGGTTGCCGTTAGAAGAAGATGAGATGCAGACGCCGG 1054
|||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||
Sbjct 1029 CTTTTAGCAATGCGGCGTACGAAAGGTTGCCTTTAGAGGAAGATGAGATGCAGACGCCGG 1088
Query 1055 TTCACGGCggaggaggaggaggaggaggaTCAATGGAGTCGCCGCCGATGATGGGACAAC 1114
|||| |||||||||||||||||| ||| ||||||||||||| |||||||||||||
Sbjct 1089 TTCATGGCGGAGGAGGAGGAGGA------TCATTGGAGTCGCCGCCAATGATGGGACAAC 1142
Query 1115 AACTGCAACATCAGCAACAAGCTATGTCGGGTCATCAAGGGTTACCACCTAATCTTCTTG 1174
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1143 AACTGCAACATCAGCAACAAGCTATGTCAGGTCATCAAGGGTTACCACCTAATCTTCTTG 1202
Query 1175 GTTCGGTTCAGTTGCAGCAGCAGCATGATCAGTCTTATTGGTCAACGGGACGACCACCGT 1234
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1203 GTTCGGTTCAGTTGCAGCAGCAACATGATCAGTCTTATTGGTCAACGGGACGACCACCGT 1262
Query 1235 ATTGATCAAATATATTCATATATACACACTCATCATCGTATAGCTAGCTAGCTAACGAAG 1294
|||||||||||||| || | ||||||||| ||||| | |||||||||||||||| |
Sbjct 1263 ATTGATCAAATATA--CACA----CACACTCATAATCGT-T-GCTAGCTAGCTAACGATG 1314
Query 1295 AATCATGAGTTTAGTGGATATATCTATGATTAAAAGAGGTTAGCTTATGAACATTAATAA 1354
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1315 AATCATGAGTTTAGTGGATATATATATGATTAAAAGAGGTTAGCTTATGAACATTAATAA 1374
Query 1355 GAGATTGGATTTTATCGAGCTTCATTATGTTTTGGTCAACGTTCATAAGATGAATCAGgt 1414
||| ||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 1375 GAGTTTGGATTCTATCGAGCTTCATTATGTTTGGGTCAACGTTCATAAGATGAACCAGGT 1434
Query 1415 tcttttttcttaaatttttattttggttcgtttt-agctcgtagatctttttatgttgat 1473
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1435 TCTTTTTTCTCAAATTTTTATTTTGGTTCGTTTTTAGCTCGTAGATCTTTTTATGTTGAT 1494
Query 1474 ttgagtaacatttttctttttgtcttggtttttctttgATGAATTCTCATTGCTAGTTTG 1533
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 TTTAGTAACATTTTTCTGTTTGTCTTGGTTTTTCTTTGATGAATTCTCATTGCTAGTTTG 1554
Query 1534 CATTTGATT 1542
|||||||||
Sbjct 1555 CATTTGATT 1563
> AT4G12050.1 | Symbols: | Predicted AT-hook DNA-binding family
protein | chr4:7219824-7221328 REVERSE LENGTH=1505
Length=1505
Score = 593 bits (321), Expect = 1e-168
Identities = 750/946 (79%), Gaps = 73/946 (8%)
Strand=Plus/Plus
Query 339 ACATCTCCAACAACAACAACAAGAGTTCTTCCTCCACCACCACCAGC-A--ACAAAGAAA 395
||||| ||||||||||||||| ||||||| |||||||| || |||| | |||||||||
Sbjct 275 ACATCAACAACAACAACAACAACAGTTCTTTCTCCACCATCATCAGCAACCACAAAGAAA 334
Query 396 CC--AAAC-CGATGATGATCAACAAGGAGGATCAGGA-GGAAACCGA-CAAATCAAGATG 450
|| | | ||| | || || |||||||| ||| | | || || | |||||||||
Sbjct 335 CCTTGATCAAGATCACGAGCAGCAAGGAGGGTCAATATTG-AATAGATC-TATCAAGATG 392
Query 451 GATCGTGAAGAGACAA--G----C---GACAACATCGCT-A-A-CAACAGCGGTAGTGAA 498
||||| |||||||||| | | |||||||||||| | | |||||||||||| |||
Sbjct 393 GATCGCGAAGAGACAAGCGATAACATGGACAACATCGCTAATACCAACAGCGGTAGCGAA 452
Query 499 GGTAAGGACATAGA-TTTACACGGAGGTTCGGGAGAAGGAGGCGGCGGCT-CTGGAGG-A 555
||||| || || || |||||||||| ||||||||||| |||| | |||||| |
Sbjct 453 GGTAAAGAGAT-GAGTTTACACGGA------GGAGAAGGAGGAAGCGG-TGGTGGAGGAA 504
Query 556 ---GATCATCAGATGACAAGAAGACCAAGAGGAAGACCAGCTGGATCCAAGAACAAACCA 612
|| | |||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 505 GTGGA-GAACAGATGACAAGAAGGCCAAGAGGAAGACCAGCAGGATCCAAGAACAAACCT 563
Query 613 AAACCACCGATTATCGTCACGCGGGACAGCGCAAACGCGCTTAGAACCCACGTGATGGAG 672
||| | || || ||| | || | |||||||||||||||||| |||| ||||| ||||||
Sbjct 564 AAAGCTCCAATAATCATAACAAGAGACAGCGCAAACGCGCTTCGAACTCACGTCATGGAG 623
Query 673 ATTGGAGACGGATGTGATC-TAGTCGAGAGCGTGGCCACTTTCGCAAGAAGACGCCAACG 731
|| |||||||||||||| | |||| || | |||| || ||||| ||| | |||||| |
Sbjct 624 ATAGGAGACGGATGTGA-CATAGTTGACTGTATGGCTACGTTCGCTAGACGCCGCCAAAG 682
Query 732 CGGCGTTTGCGTTATGAGCGGTACTGGAAACGTTACTAACGTCACTATACGTCAGCCTGG 791
||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 683 AGGCGTTTGCGTTATGAGCGGTACAGGAAGCGTTACTAACGTCACTATACGTCAGCCTGG 742
Query 792 ATCTCATCCTTCTCCTGGCTCGGTCGTTAGTCTTCACGGAAGGTTCGAGATtctctctct 851
||| | | | | ||||||||| ||||| |||||||| |||| || || ||||||||
Sbjct 743 ATCGC--CA--C-C-TGGCTCGGTGGTTAGCCTTCACGGCCGGTTTGAAATCCTCTCTCT 796
Query 852 ctctGGCTCTTTTCTC-CCTCCGCCGGCTCCTCCTACAGCCACCGGATTGAGTGTTTACC 910
|| || ||||| || |||||||| || || ||| ||||||||||| | || |||||||
Sbjct 797 TTCGGGATCTTT-CTTGCCTCCGCCTGCGCCGCCTGCAGCCACCGGACTAAGCGTTTACC 855
Query 911 TCGCCGGAGGACAAGGACAAGTAGTCGGTGGAAGCGTGGTTGGTCCATTGTTGTGTGCTG 970
| |||||||||||||| || || || || || || ||||| || || ||||||||| | |
Sbjct 856 TAGCCGGAGGACAAGGGCAGGTCGTTGGAGGTAGTGTGGTGGGACCTTTGTTGTGTTCGG 915
Query 971 GTCCTGTTGTTGTTATGGCTGCGTCTTTTAGCAATGCGGCGTACGAGAGGTTGCCGTTAG 1030
||||||| || |||||||| || ||||||||||||||||||||||| ||| |||| || |
Sbjct 916 GTCCTGTGGTGGTTATGGCGGCTTCTTTTAGCAATGCGGCGTACGAAAGGCTGCCTTTGG 975
Query 1031 AAGAAGATGAGATGCAGACGCCGGTTCACGG---Cggaggaggaggaggaggagga--TC 1085
|||||||||||||||||||||| ||||| || ||| |||||||||||||| || |
Sbjct 976 AAGAAGATGAGATGCAGACGCCAGTTCAAGGAGGCGGTGGAGGAGGAGGAGGTGGTGGTG 1035
Query 1086 -AATGG-AGTCGCCGCCGATGATGGGACAACAACT-GCAACATCAGCAACAAGCTATGTC 1142
||||| | || || |||||||||||||| |||| || | | ||| |||||| |
Sbjct 1036 GAATGGGA-TCTCCCCCGATGATGGGACAGCAACAAGCTA--TG-GCA----GCTATGGC 1087
Query 1143 GG-GTCATCAAGGGTTACCACCTAATCTTCTTGGTTCGGTTCAGTTGC-A--GC-AG--C 1195
|| | | |||||| ||||||| ||||||||||||||||||||||||| | || | |
Sbjct 1088 GGCGGC-TCAAGGACTACCACCGAATCTTCTTGGTTCGGTTCAGTTGCCACCGCCACAAC 1146
Query 1196 AGCATGATCAGTCT-TATTGGTCAACGGGACGACCACCGTATTGAT 1240
|| |||||||| | |||||||| ||||| || |||||||||||||
Sbjct 1147 AGAATGATCAG-CAGTATTGGTCTACGGGTCGGCCACCGTATTGAT 1191
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76104026220
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5