BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492589
Length=1682
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22790.1 | Symbols: | MATE efflux family protein | chr4:119... 2416 0.0
> AT4G22790.1 | Symbols: | MATE efflux family protein | chr4:11975031-11976748
REVERSE LENGTH=1718
Length=1718
Score = 2416 bits (1308), Expect = 0.0
Identities = 1492/1580 (94%), Gaps = 16/1580 (1%)
Strand=Plus/Plus
Query 1 TTTTTTGTCATCTTCATCAACAAACAAACAACCATCTCTGCAAAATTGGCTGAAACCTCT 60
|||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 11 TTTTTTGTCATCTTTATCAACAAACAAACAACTATCTCTGCAAATTTGGCTGAAACCTCT 70
Query 61 TAGAAGTTCTTTCCTATGTTCCAAATTATTCATATTTTCAGATTTTCTACTAATAACAAT 120
|| ||||||||| || |||||||||||| || || |||||||||||| || |||
Sbjct 71 TAAAAGTTCTTTGCTCTGTTCCAAATTA-TC-------CATATTTTCTACTAACAATAAT 122
Query 121 GTCAGAAAAATCAAAGTCAGAGTCTTTAGATCCAGAAGTCTCTGTTTCTGAAGGGTTTTG 180
|||||||| ||||||||||||||||||||||||||||| || ||||||||| ||||
Sbjct 123 GTCAGAAACATCAAAGTCAGAGTCTTTAGATCCAGAAG--TC----TCTGAAGGGCTTTG 176
Query 181 TTCAAAGACCTTGATGCAGAGCATTTTTCATGAGCTAAACCTGCAAATGAGAATTGGTTT 240
||||||||||||||||||||||||| |||||||||| || ||||| ||||||||||||||
Sbjct 177 TTCAAAGACCTTGATGCAGAGCATTGTTCATGAGCTGAAGCTGCAGATGAGAATTGGTTT 236
Query 241 GCCATTGGTGGTTATGAACTTGTTGTGGTTCGGTAAGATGACCACCACATCTGTGTTTCT 300
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 237 GCCATTGGTGGTTATGAATTTGTTGTGGTTCGGTAAGATGACCACCACATCTGTGTTTCT 296
Query 301 TGGCCGTCAAGGTGAGCTTAACCTAGCTGGAGGTTCATTAGGGTTTTCCTTTGCAAACGT 360
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 297 TGGCCGTCAAGGTGAGCTTAACCTAGCCGGAGGTTCATTAGGGTTTTCCTTTGCAAACGT 356
Query 361 TACTGGCTTTGCTGTTTTGTATGGTATTTCTGCTGCAATGGAGCCTATTTGTGGCCAAGC 420
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TACTGGCTTTTCTGTTTTGTATGGTATTTCTGCTGCAATGGAGCCTATTTGTGGCCAAGC 416
Query 421 TTTCGGAGCCAAGAACTTTAAGCTTCTCCACAAAACCCTTTTTATGGCAGTGCTCTTGCT 480
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 417 TTTCGGAGCCAAGAACTTTAAGCTTCTTCATAAAACCCTTTTTATGGCAGTGCTCTTGCT 476
Query 481 ACTCTTGATTTCGGTACCAATTTCTTCCTTGTGGCTCAATGTTCACAAGATACTTATTGG 540
|||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||
Sbjct 477 ACTCTTGATTTCGGTACCAATTTCTTTCTTGTGGCTCAATGTTCACAAGATCCTTACTGG 536
Query 541 TTTTGGTCAAAGAAAAGATATTTCCTTCATAGCCAAGAGATATCTTCTCTACCTTCTTCC 600
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 537 TTTTGGTCAAAGAGAAGATATTTCCTTCATAGCCAAGAAATATCTTCTCTACCTTCTTCC 596
Query 601 AGAGTTGCCAATCCTCTCTTTGCTTTGTCCACTTAAGGCTTACTTAAGCTCACAAGGTGT 660
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 597 AGAGTTGCCAATCCTCTCTTTTCTTTGTCCACTTAAGGCTTATTTAAGCTCACAAGGTGT 656
Query 661 AACTCTCCCCATCATGTTCACAACAGCTGCAGCCACTTCTCTTCATATCCCCATTAACAT 720
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 657 TACTCTTCCCATCATGTTCACAACAGCTGCAGCCACTTCTCTTCATATCCCCATCAACAT 716
Query 721 AATCCTCTCTAAAGCAAAAGGAATGGAAGGAGTTGCAATGGCGGTTTGGATAACCGATTT 780
| ||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||
Sbjct 717 AGTCCTCTCTAAAGCAAGAGGAATTGAAGGAGTTGCAATGGCGGTTTGGATAACTGATTT 776
Query 781 TATTGTTGTCATTCTTCTAACCGGGTATGTGATTGTCGCAGAGCGATTGAAAGAGAACAT 840
||||||||| ||||||||||| || |||||||| |||| ||||||| ||||||||||||
Sbjct 777 TATTGTTGTGATTCTTCTAACTGGATATGTGATAGTCGTAGAGCGAATGAAAGAGAACAA 836
Query 841 ATGGAAAGAAGGTGGCTGGTTTGACCAAAGTGCTCAAGACTGGCTCACACTGATCAAGCT 900
||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 837 ATGGAAACAAGGTGGCTGGTTAAACCAAAGTGCTCAAGACTGGCTCACACTGATCAAGCT 896
Query 901 TAGTGGACCATGTTGTCTCACCGTGTGCCTTGAGTGGTGGTGCTACGAGATCTTGGTCCT 960
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 897 TAGTGGACCATGTTGTCTCACCGTGTGCCTTGAATGGTGGTGCTACGAGATCTTGGTCCT 956
Query 961 TTTAACCGGGAGGTTACCAAACCCGGTGCAAGCTGTATCAATCTTGATCATAGTTTTCAA 1020
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 957 TTTAACCGGGAGGTTACCAAACCCGGTGCAAGCTGTATCAATCTTGATTATAGTTTTCAA 1016
Query 1021 CTTCGACTACTTGCTTTACGCCGTGATGCTCTCTTTAGGCACGTGTGTGGCAACAAGAGT 1080
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1017 CTTCGACTACTTGCTTTACGCGGTGATGCTCTCTTTAGGCACGTGTGTGGCAACAAGAGT 1076
Query 1081 GTCCAATGAGCTTGGCGCAAATAATCCCAAGGGAGCTTATAGAGCAGCTTATACTACACT 1140
|||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1077 GTCCAATGAGCTCGGCGCAAATAATCCTAAGGGAGCTTATAGAGCAGCTTACACTACACT 1136
Query 1141 CATTGTGGGTGTTATTTCAGGATGCATTGGAGCTTTAGTGATGATAACATGTAGAGGTGT 1200
|||||||||| |||||||||| ||||||||||| |||||||||||| ||| ||||||| |
Sbjct 1137 CATTGTGGGTATTATTTCAGGCTGCATTGGAGCATTAGTGATGATAGCATTTAGAGGTTT 1196
Query 1201 TTGGGGGTCTTTGTATACTCACCATGACCAAATCATCTTAAACGGTGTGAAGAAGATGAT 1260
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1197 TTGGGGGTCTTTGTATACTCACCATGACCAACTCATCTTAAACGGTGTGAAGAAGATGAT 1256
Query 1261 GCTGATAATGGCGGTTATCGAAGTTGTAAACTTCCCATTAGTGGTTTGCGGAGAGATTGT 1320
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||
Sbjct 1257 GCTGATAATGGCGGTTATCGAAGTTGTAAACTTCCCATTAATGGTTTGTGGAGAGATAGT 1316
Query 1321 ACGCGGAACAGCAAAACTGTCGCTTGGAATGTATGCAAATCTTACTGGATTCTATCTATT 1380
||||||||||| |||| ||| |||||||||||||||||||||| |||||||||||||||
Sbjct 1317 CCGCGGAACAGCGAAACCGTCTCTTGGAATGTATGCAAATCTTAGTGGATTCTATCTATT 1376
Query 1381 GGCTTTGCCTTTGGGGGCAACTTTGGCGTTCAAGGCTAAACAAGGGCTTGAAGGGTTCTT 1440
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1377 GGCTTTGCCTTTAGGGGCAACTTTGGCGTTCAAGGCTAAACAAGGGCTTCAAGGGTTCTT 1436
Query 1441 GATCGGGTT-TTTGGTCGGTATCTCTGTCTGTCTCTCGATATTGCTCATCTTTATTGCGA 1499
||||||||| ||| || ||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 1437 GATCGGGTTATTT-GTTGGTATATCTCTCTGTCTCTCGATATTGCTCATCTTTATTGCGA 1495
Query 1500 GGATAGATTGGGAGAAAGAAGCTGGGAAAGCACAGATTCTGACATGTAACACAGTGGAAG 1559
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1496 GGATAGATTGGGAGAAAGAAGCTGGGAAAGCACAGATTCTGACATGTAACACAGAGGACG 1555
Query 1560 AACAAACTTCACAAGGTTCA 1579
||||||||||||||||||||
Sbjct 1556 AACAAACTTCACAAGGTTCA 1575
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83132102520
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5