BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg492589 Length=1682 Score E Sequences producing significant alignments: (Bits) Value AT4G22790.1 | Symbols: | MATE efflux family protein | chr4:119... 2416 0.0 > AT4G22790.1 | Symbols: | MATE efflux family protein | chr4:11975031-11976748 REVERSE LENGTH=1718 Length=1718 Score = 2416 bits (1308), Expect = 0.0 Identities = 1492/1580 (94%), Gaps = 16/1580 (1%) Strand=Plus/Plus Query 1 TTTTTTGTCATCTTCATCAACAAACAAACAACCATCTCTGCAAAATTGGCTGAAACCTCT 60 |||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 11 TTTTTTGTCATCTTTATCAACAAACAAACAACTATCTCTGCAAATTTGGCTGAAACCTCT 70 Query 61 TAGAAGTTCTTTCCTATGTTCCAAATTATTCATATTTTCAGATTTTCTACTAATAACAAT 120 || ||||||||| || |||||||||||| || || |||||||||||| || ||| Sbjct 71 TAAAAGTTCTTTGCTCTGTTCCAAATTA-TC-------CATATTTTCTACTAACAATAAT 122 Query 121 GTCAGAAAAATCAAAGTCAGAGTCTTTAGATCCAGAAGTCTCTGTTTCTGAAGGGTTTTG 180 |||||||| ||||||||||||||||||||||||||||| || ||||||||| |||| Sbjct 123 GTCAGAAACATCAAAGTCAGAGTCTTTAGATCCAGAAG--TC----TCTGAAGGGCTTTG 176 Query 181 TTCAAAGACCTTGATGCAGAGCATTTTTCATGAGCTAAACCTGCAAATGAGAATTGGTTT 240 ||||||||||||||||||||||||| |||||||||| || ||||| |||||||||||||| Sbjct 177 TTCAAAGACCTTGATGCAGAGCATTGTTCATGAGCTGAAGCTGCAGATGAGAATTGGTTT 236 Query 241 GCCATTGGTGGTTATGAACTTGTTGTGGTTCGGTAAGATGACCACCACATCTGTGTTTCT 300 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 237 GCCATTGGTGGTTATGAATTTGTTGTGGTTCGGTAAGATGACCACCACATCTGTGTTTCT 296 Query 301 TGGCCGTCAAGGTGAGCTTAACCTAGCTGGAGGTTCATTAGGGTTTTCCTTTGCAAACGT 360 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 297 TGGCCGTCAAGGTGAGCTTAACCTAGCCGGAGGTTCATTAGGGTTTTCCTTTGCAAACGT 356 Query 361 TACTGGCTTTGCTGTTTTGTATGGTATTTCTGCTGCAATGGAGCCTATTTGTGGCCAAGC 420 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 357 TACTGGCTTTTCTGTTTTGTATGGTATTTCTGCTGCAATGGAGCCTATTTGTGGCCAAGC 416 Query 421 TTTCGGAGCCAAGAACTTTAAGCTTCTCCACAAAACCCTTTTTATGGCAGTGCTCTTGCT 480 ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct 417 TTTCGGAGCCAAGAACTTTAAGCTTCTTCATAAAACCCTTTTTATGGCAGTGCTCTTGCT 476 Query 481 ACTCTTGATTTCGGTACCAATTTCTTCCTTGTGGCTCAATGTTCACAAGATACTTATTGG 540 |||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||| Sbjct 477 ACTCTTGATTTCGGTACCAATTTCTTTCTTGTGGCTCAATGTTCACAAGATCCTTACTGG 536 Query 541 TTTTGGTCAAAGAAAAGATATTTCCTTCATAGCCAAGAGATATCTTCTCTACCTTCTTCC 600 ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 537 TTTTGGTCAAAGAGAAGATATTTCCTTCATAGCCAAGAAATATCTTCTCTACCTTCTTCC 596 Query 601 AGAGTTGCCAATCCTCTCTTTGCTTTGTCCACTTAAGGCTTACTTAAGCTCACAAGGTGT 660 ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 597 AGAGTTGCCAATCCTCTCTTTTCTTTGTCCACTTAAGGCTTATTTAAGCTCACAAGGTGT 656 Query 661 AACTCTCCCCATCATGTTCACAACAGCTGCAGCCACTTCTCTTCATATCCCCATTAACAT 720 ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 657 TACTCTTCCCATCATGTTCACAACAGCTGCAGCCACTTCTCTTCATATCCCCATCAACAT 716 Query 721 AATCCTCTCTAAAGCAAAAGGAATGGAAGGAGTTGCAATGGCGGTTTGGATAACCGATTT 780 | ||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||| Sbjct 717 AGTCCTCTCTAAAGCAAGAGGAATTGAAGGAGTTGCAATGGCGGTTTGGATAACTGATTT 776 Query 781 TATTGTTGTCATTCTTCTAACCGGGTATGTGATTGTCGCAGAGCGATTGAAAGAGAACAT 840 ||||||||| ||||||||||| || |||||||| |||| ||||||| |||||||||||| Sbjct 777 TATTGTTGTGATTCTTCTAACTGGATATGTGATAGTCGTAGAGCGAATGAAAGAGAACAA 836 Query 841 ATGGAAAGAAGGTGGCTGGTTTGACCAAAGTGCTCAAGACTGGCTCACACTGATCAAGCT 900 ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 837 ATGGAAACAAGGTGGCTGGTTAAACCAAAGTGCTCAAGACTGGCTCACACTGATCAAGCT 896 Query 901 TAGTGGACCATGTTGTCTCACCGTGTGCCTTGAGTGGTGGTGCTACGAGATCTTGGTCCT 960 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 897 TAGTGGACCATGTTGTCTCACCGTGTGCCTTGAATGGTGGTGCTACGAGATCTTGGTCCT 956 Query 961 TTTAACCGGGAGGTTACCAAACCCGGTGCAAGCTGTATCAATCTTGATCATAGTTTTCAA 1020 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 957 TTTAACCGGGAGGTTACCAAACCCGGTGCAAGCTGTATCAATCTTGATTATAGTTTTCAA 1016 Query 1021 CTTCGACTACTTGCTTTACGCCGTGATGCTCTCTTTAGGCACGTGTGTGGCAACAAGAGT 1080 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1017 CTTCGACTACTTGCTTTACGCGGTGATGCTCTCTTTAGGCACGTGTGTGGCAACAAGAGT 1076 Query 1081 GTCCAATGAGCTTGGCGCAAATAATCCCAAGGGAGCTTATAGAGCAGCTTATACTACACT 1140 |||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 1077 GTCCAATGAGCTCGGCGCAAATAATCCTAAGGGAGCTTATAGAGCAGCTTACACTACACT 1136 Query 1141 CATTGTGGGTGTTATTTCAGGATGCATTGGAGCTTTAGTGATGATAACATGTAGAGGTGT 1200 |||||||||| |||||||||| ||||||||||| |||||||||||| ||| ||||||| | Sbjct 1137 CATTGTGGGTATTATTTCAGGCTGCATTGGAGCATTAGTGATGATAGCATTTAGAGGTTT 1196 Query 1201 TTGGGGGTCTTTGTATACTCACCATGACCAAATCATCTTAAACGGTGTGAAGAAGATGAT 1260 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1197 TTGGGGGTCTTTGTATACTCACCATGACCAACTCATCTTAAACGGTGTGAAGAAGATGAT 1256 Query 1261 GCTGATAATGGCGGTTATCGAAGTTGTAAACTTCCCATTAGTGGTTTGCGGAGAGATTGT 1320 |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| || Sbjct 1257 GCTGATAATGGCGGTTATCGAAGTTGTAAACTTCCCATTAATGGTTTGTGGAGAGATAGT 1316 Query 1321 ACGCGGAACAGCAAAACTGTCGCTTGGAATGTATGCAAATCTTACTGGATTCTATCTATT 1380 ||||||||||| |||| ||| |||||||||||||||||||||| ||||||||||||||| Sbjct 1317 CCGCGGAACAGCGAAACCGTCTCTTGGAATGTATGCAAATCTTAGTGGATTCTATCTATT 1376 Query 1381 GGCTTTGCCTTTGGGGGCAACTTTGGCGTTCAAGGCTAAACAAGGGCTTGAAGGGTTCTT 1440 |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1377 GGCTTTGCCTTTAGGGGCAACTTTGGCGTTCAAGGCTAAACAAGGGCTTCAAGGGTTCTT 1436 Query 1441 GATCGGGTT-TTTGGTCGGTATCTCTGTCTGTCTCTCGATATTGCTCATCTTTATTGCGA 1499 ||||||||| ||| || ||||| ||| ||||||||||||||||||||||||||||||||| Sbjct 1437 GATCGGGTTATTT-GTTGGTATATCTCTCTGTCTCTCGATATTGCTCATCTTTATTGCGA 1495 Query 1500 GGATAGATTGGGAGAAAGAAGCTGGGAAAGCACAGATTCTGACATGTAACACAGTGGAAG 1559 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | Sbjct 1496 GGATAGATTGGGAGAAAGAAGCTGGGAAAGCACAGATTCTGACATGTAACACAGAGGACG 1555 Query 1560 AACAAACTTCACAAGGTTCA 1579 |||||||||||||||||||| Sbjct 1556 AACAAACTTCACAAGGTTCA 1575 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 83132102520 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5