BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492596
Length=2474
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22730.1 | Symbols: | Leucine-rich repeat protein kinase fa... 3565 0.0
> AT4G22730.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr4:11941131-11943885 FORWARD LENGTH=2509
Length=2509
Score = 3565 bits (1930), Expect = 0.0
Identities = 2309/2486 (93%), Gaps = 49/2486 (2%)
Strand=Plus/Plus
Query 1 ATTCACGAGAGTGGAAGATTAGAGTTTTCCAAATCCGAGTAAA-AGACACAAAA----TC 55
||||||||||||||||| ||| ||||||||||||||||| ||| |||||||||| ||
Sbjct 1 ATTCACGAGAGTGGAAGGTTACAGTTTTCCAAATCCGAG-AAACAGACACAAAATTGGTC 59
Query 56 TTTC-CCAAAAGTTTCTATCTTCTCTTCGTCTAACAAAGAGATAGCTCCAAATCCTGAAC 114
|| | ||||| | || | | ||||||| |||||||||||||||||| ||||| | ||
Sbjct 60 CCTCTCTAAAAG--T-TA-C-TATCTTCGTTTAACAAAGAGATAGCTCCCAATCCAGTAC 114
Query 115 AAAACAGAGTACTCTCTGCTCTATAAACTTCATTACCTTTATTACTCTGCTCTTTAAAAC 174
||||||||||| |||||||||||||| ||| || |||||||||||||||||| ||||||
Sbjct 115 AAAACAGAGTA--CTCTGCTCTATAAATTTCGTT-CCTTTATTACTCTGCTCTATAAAAC 171
Query 175 AGAGTACTCTGCT-T-T---ATAG--AGATAAATGAGCTAAAGATCAGTAATTTCTATAC 227
||| || |||||| | | | || ||||||||||||||||| ||||||||||||| ||
Sbjct 172 AGATTATTCTGCTCTATAAGAGAGATAGATAAATGAGCTAAAGCTCAGTAATTTCTAAAC 231
Query 228 AGAGAGACAAGACCAATTCAAGAATGGTTTCCTTAAGTGCCACGTTACTTATCCTTCTCT 287
|||||||||||| ||||||||||||||| ||||| ||||||||||||| ||||||||||
Sbjct 232 AGAGAGACAAGA-AAATTCAAGAATGGTTACCTTATGTGCCACGTTACTGATCCTTCTCT 290
Query 288 CAATCtttttttCAACTCCGTCCAATGTTCGAGGCAATGCAGAGCTAAAAGCTTTAATGG 347
|||||||| || |||||||||| ||||||||||| ||||||||||| || ||||||||||
Sbjct 291 CAATCTTTCTTGCAACTCCGTCGAATGTTCGAGGAAATGCAGAGCTGAAGGCTTTAATGG 350
Query 348 AGCTCAAATCATCGCTTGACCCTGAAAACAAGCTTCTCCGATCATGGACGTTTAACGGAG 407
|||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 351 AGCTGAAATCGTCGCTTGACCCTGAAAACAAGCTTCTCCGTTCATGGACGTTTAACGGCG 410
Query 408 ATCCATGCGACGGATCTTTCGAAGGAATTGCCTGTAACCAGCATCTAAAAGTTGCAAACA 467
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 411 ATCCATGCGACGGATCTTTCGAAGGAATTGCATGTAACCAGCATCTAAAAGTCGCAAACA 470
Query 468 TATCGTTACAAGGGAAACGTTTAGCCGGAAAACTGTCTCCGGCGGTTGCAGAGCTCAAAT 527
|||| ||||||||||||||||| | ||||||| |||||||||||||||||||||||||||
Sbjct 471 TATCATTACAAGGGAAACGTTTGGTCGGAAAATTGTCTCCGGCGGTTGCAGAGCTCAAAT 530
Query 528 GTTTGTCAGGTCTTTACTTACATTATAATAGTCTCTCCGGAGAGATACCTCAAGAGATCA 587
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 531 GTTTGTCAGGTCTTTACTTACATTACAATAGTCTCTCTGGAGAGATACCTCAAGAGATCA 590
Query 588 CAAATCTTACTGAATTATCAGATCTTTATCTCAATGTTAATAACTTCTCCGGCGAGATTC 647
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 591 CAAATCTTACTGAATTATCAGATCTTTATCTCAATGTTAATAACTTCTCTGGTGAGATTC 650
Query 648 CGGCAGATATCGGCTCTATGGCTGGCTTGCAAGTTATGGATCTTTGTTGCAACAGTTTAA 707
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 CGGCAGATATCGGCTCCATGGCTGGCTTGCAAGTTATGGATCTTTGTTGCAACAGTTTAA 710
Query 708 CAGGGAAGATACCAAAGAACATTGGTA-CTTTGAAGAAACTAAATGTGTTGTCTCTGCAA 766
||||||||||||||||||||||||| | | ||||||||||| ||||||||||||||||||
Sbjct 711 CAGGGAAGATACCAAAGAACATTGG-ATCCTTGAAGAAACTTAATGTGTTGTCTCTGCAA 769
Query 767 CACAACCAACTAACCGGAGAGGTTCCTTGGAGTTTAGGAAACTTAAGTATGTTAAGCAGA 826
|||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 770 CACAACAAACTAACCGGAGAGGTTCCTTGGACTTTAGGAAACTTGAGTATGTTAAGCAGG 829
Query 827 ATTGATTTGAGCTTCAACAATCTGTTAGGTTTAATCCCAAAAACCCTAGCCAACATTCCT 886
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 CTTGATTTAAGCTTCAACAATCTGTTAGGTTTAATCCCAAAAACCCTAGCCAACATTCCT 889
Query 887 CAGTTGGATACTCTTGACTTGCGCAACAATACTCTCTCTGGCTTTGTTCCTTCTGGTCTC 946
|||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 890 CAGTTGGACACTCTTGACTTGCGCAACAATACTCTCTCTGGCTTTGTTCCTCCTGGTCTT 949
Query 947 AAGAAGTTGAATGGGAGCTTCCAGTTTGAGAACAATACCGGGTTATGTGGTATGGATTTT 1006
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 950 AAGAAGTTGAATGGGAGCTTCCAGTTTGAGAACAACACCGGGTTATGTGGTATCGATTTT 1009
Query 1007 CCTTCTTTGAGAGCTTGTTCTGCTTTCGATAATGCG---AACATCGAACAATTCAAGCAG 1063
|||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||
Sbjct 1010 CCTTCTTTGAGAGCTTGTTCTGCTTTCGATAATGCGAATAATATCGAACAATTTAAGCAG 1069
Query 1064 CCTCCTGGTGAAATAGACACTGATAAATCAGCTCTTCACAACATTTCCGAGTCTGTATAT 1123
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1070 CCTCCTGGTGAAATAGACACTGATAAATCAGCTCTTCACAACATTCCCGAGTCTGTATAT 1129
Query 1124 CTCCAAAAGCATTGCAACAAAACACAATGCAAGAAATCCTCATCGAAACTCCCACAAGTT 1183
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 1130 CTCCAAAAGCATTGCAACCAAACACATTGCAAGAAATCCTCATCGAAACTCCCACAAGTT 1189
Query 1184 GCGTTGATTTCAAGCGTGATTACCGTGACTATAACACTGCTTGGTGCCGGCATATTGACC 1243
|| ||||||||||||||||||||||| ||||||||| || ||||||| || |||||||||
Sbjct 1190 GCTTTGATTTCAAGCGTGATTACCGTCACTATAACATTGATTGGTGCTGGTATATTGACC 1249
Query 1244 TTCTTTCGCTACAGAAGACGGAAGCAAAAGATTAGTAACACGCCTGAGTTTTCCGAGGGA 1303
|||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1250 TTCTTTCGCTACAGAAGAAGGAAGCAAAAGATCAGTAACACACCTGAGTTTTCCGAGGGA 1309
Query 1304 AGACTCAGCACAGATCAACAAAAAGATTTCCGCGCATCGCCTTTAGTGAGTCTTGCCTAC 1363
||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1310 AGACTAAGCACAGATCAACAAAAAGAGTTCCGTGCATCGCCTTTAGTGAGTCTTGCCTAC 1369
Query 1364 ACTAAAGAATGGGATCCGCTCGGCGATAGCAGAAACGGAGCTGAGTTCTCACAAGAGCCT 1423
|||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct 1370 ACTAAAGAATGGGATCCGCTAGGTGATAGCAGAAACGGAGCTGAGTTTTCACAAGAGCCT 1429
Query 1424 CATCTCTTTGTTGTTAATAGTAGCTTCAGGTTTAACTTAGAAGACATTGAATCAGCGACG 1483
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1430 CATCTCTTTGTTGTAAATAGTAGCTTCAGGTTTAACTTAGAAGACATTGAATCAGCAACC 1489
Query 1484 CAATGCTTCTCAGAAGCTAACT-TACTAAGCCGAAACAGCTTCACCTCGGTGTTCAAAGG 1542
|||||||||||||||||||| | || | ||| |||||||||||||||| |||||||||||
Sbjct 1490 CAATGCTTCTCAGAAGCTAA-TCTATTGAGCAGAAACAGCTTCACCTCAGTGTTCAAAGG 1548
Query 1543 AGTCCTCAGAGATGGTTCTCCGGTAGCTATCAGAAGCATCAACATAAGCAGTTGCAAGAA 1602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1549 AGTCCTCAGAGATGGTTCTCCGGTAGCTATCAGAAGCATCAACATAAGCAGTTGCAAGAA 1608
Query 1603 CGAAGAAGTCGAATTCATGAACGGTTTAAAGCTTTTATCTTCGCTGTCACATGAAAACTT 1662
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 1609 CGAAGAAGTCGAATTCATGAACGGTTTAAAGCTTTTATCTTCGTTGTCACACGAAAACTT 1668
Query 1663 AATGAAGCTACGCGGATTCTGCTGTTCTAGAGGCAGAGGAGAGTGTTTCCTCATCTATGA 1722
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1669 AGTGAAGCTACGTGGATTCTGCTGTTCTAGAGGCAGAGGAGAGTGTTTCCTCATCTATGA 1728
Query 1723 TTTTGCTTCAAAAGGAAAGCTCTCGAATTTTCTTGA-TATACAAGAACATGAAACGAATC 1781
||||||||||||||||||||| || ||||||||||| | ||||||||| ||||| ||||
Sbjct 1729 TTTTGCTTCAAAAGGAAAGCTTTCAAATTTTCTTGACT-TACAAGAACGCGAAACTAATC 1787
Query 1782 AGGTTCTTGATTGGCCTGCAAGAATCTCCATCATCAAAGGGATTGCAAAAGGTATTGCTT 1841
||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1788 TGGTCCTTGCTTGGTCTGCAAGAATCTCCATCATCAAAGGGATTGCAAAAGGTATTGCTT 1847
Query 1842 ATTTACATGGAAGTGATCAACAGAAGAAGCCTACAATAGTTCATCGAAACATCTCTGTCG 1901
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1848 ACTTACATGGAAGTGATCAACAGAAGAAGCCTACAATAGTTCATCGAAACATCTCTGTCG 1907
Query 1902 AGAAAATCCTACTCGATGAGCAATTCAACCCTTTGATCGCTGATTCGGGTCTTCACAACC 1961
| ||||||||||| ||||| ||||| ||||| || |||||||||||||||||||||||||
Sbjct 1908 AAAAAATCCTACTTGATGAACAATTTAACCCGTTAATCGCTGATTCGGGTCTTCACAACC 1967
Query 1962 TTCTAGCAGACGATATGGTCTTCTCAGCACTCAAAACAAGTGCAGCAATGGGATATTTAG 2021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1968 TTCTAGCAGACGATATGGTCTTCTCAGCACTCAAAACAAGTGCAGCAATGGGATATTTAG 2027
Query 2022 CTCCAGAATATGTCACAACCGGAAAATTCACCGAGAAAACCGACATTTTTGCCTTTGGAG 2081
|||| ||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 2028 CTCCGGAATACGTCACAACCGGAAAATTCACCGAGAAAACCGATATTTTCGCCTTTGGAG 2087
Query 2082 TCATCATTCTCCAGATACTCTCTGGCAAGCTCATGCTTACTAGCTCACTGAGAATTGCAG 2141
||||||||||||||||||||||||| |||||||||||||| || |||||||||| |||||
Sbjct 2088 TCATCATTCTCCAGATACTCTCTGGTAAGCTCATGCTTACAAGTTCACTGAGAAATGCAG 2147
Query 2142 CTGAGAATGGAGAACATAGCGGGTTCATCGATGAATATCTTCGTGAAGAGTTCGATAAAC 2201
|||| ||||||||||||| |||||||||||||||| |||||||||||||||| |||||||
Sbjct 2148 CTGAAAATGGAGAACATAACGGGTTCATCGATGAAGATCTTCGTGAAGAGTTTGATAAAC 2207
Query 2202 CAGAGGCGACTGCAATGGCGAGGATTGGAATAAGCTGTACACAGGAGATCCCAAACAATA 2261
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 2208 CAGAGGCGACTGCAATGGCGAGGATTGGGATAAGCTGTACACAGGAGATACCAAACAATA 2267
Query 2262 GGCCTAATATAGAGACATTGCTTGAGGATATAAACTCTATGAAGAGTGAATGAGTCTG-T 2320
|||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||| |
Sbjct 2268 GGCCTAATATAGAGACATTGCTTGAGAATATAAACTGTATGAAGAGTGAATGACTCTGCT 2327
Query 2321 TTTGA-TTAGTAACTCTGTTTCAACATTGTGCAAGTATGATTCTCCGGTTAAGCAGTATC 2379
||| | |||||| ||| || ||||||||||||||||||||||| || || ||
Sbjct 2328 TTTTAATTAGTA--TCT-TT--------GTGCAAGTATGATTCTCCGGTTA-GCTGTGTC 2375
Query 2380 ACACCAATTGGTTTTCTTTGTTTT-GTTTTTCTCCGGCAAGAACCGG-TCCGGTTTATAT 2437
|||||||||||||| |||||||| ||| | |||| | ||||||||| ||||||||||||
Sbjct 2376 CCACCAATTGGTTTTGTTTGTTTTAGTTCT-CTCCAGTAAGAACCGGGTCCGGTTTATAT 2434
Query 2438 TTTATTTAGATTTGTAGCTGAGAATT 2463
||||||||||||||||||||||||||
Sbjct 2435 TTTATTTAGATTTGTAGCTGAGAATT 2460
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 122758509521
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5