BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492601
Length=1258
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22680.1 | Symbols: MYB85, AtMYB85 | myb domain protein 85 |... 1386 0.0
AT4G12350.1 | Symbols: MYB42, AtMYB42 | myb domain protein 42 |... 411 1e-113
> AT4G22680.1 | Symbols: MYB85, AtMYB85 | myb domain protein 85
| chr4:11922340-11924216 REVERSE LENGTH=1386
Length=1386
Score = 1386 bits (750), Expect = 0.0
Identities = 906/978 (93%), Gaps = 23/978 (2%)
Strand=Plus/Plus
Query 1 GACATAACTTGCAAGCAGTTGAGATTTTCCATCCTCAATAACTTTAGTT-TTCC--ATCT 57
|||||||||||||||| ||||||||||||||||||| ||||||||| || |||| ||||
Sbjct 1 GACATAACTTGCAAGCTGTTGAGATTTTCCATCCTCGATAACTTTA-TTCTTCCATATCT 59
Query 58 C-T-C-TAT-ACTCTTTATTTCACATCCCCATATAACATAATATACAATCACACATATCA 113
| | | | | |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 CTTCCATTTCGCTCTCTATTTCACATCCCCATATAACATAATATACAATCACACATATCA 119
Query 114 ----T-T-TAGTATTTAATGGGGAGGCAGCCATGCTGTGACAAGCTAGGGGTGAAGAAAG 167
| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 120 TTTCTATATAGTATTTAATGGGGAGACAGCCATGCTGTGACAAGCTAGGGGTGAAGAAAG 179
Query 168 GGCCGTGGACGGCGGAGGAAGACAAGAAGCTCATAAACTTCATACTCACCAACGGCCATT 227
|||||||||||| ||||||||| |||||||| |||||||||||||| ||||| |||||||
Sbjct 180 GGCCGTGGACGGTGGAGGAAGATAAGAAGCTTATAAACTTCATACTAACCAATGGCCATT 239
Query 228 GTTGCTGGCGTGCTTTGCCGAAGCTGGCCGGTCTCCGCCGTTGTGGAAAGAGCTGCCGCC 287
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 240 GTTGCTGGCGTGCTTTGCCGAAGCTGGCCGGTCTCCGTCGCTGTGGAAAGAGCTGCCGCC 299
Query 288 TCCGGTGGACTAACTATCTCCGGCCTGACTTGAAGA-GAGGCCTTCTTTCTCATGATGAA 346
||||||||||||||||||||||||||||||| || | |||||||||| || |||||||||
Sbjct 300 TCCGGTGGACTAACTATCTCCGGCCTGACTT-AAAACGAGGCCTTCTCTCGCATGATGAA 358
Query 347 GAACAACTTGTAATTGATCTTCATGCGCATCTCGGAAATAAGTGGTCTAAGATAGCTTCA 406
||||||||||| || ||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 359 GAACAACTTGTCATAGATCTTCATGCTAATCTCGGCAATAAGTGGTCTAAGATAGCTTCA 418
Query 407 AGATTACCTGGAAGAACAGATAACGAAATAAAAAACCATTGGAATACTCATATCAAGAAA 466
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 AGATTACCTGGAAGAACAGATAACGAAATAAAAAACCATTGGAATACTCATATCAAGAAG 478
Query 467 AAACTTCTTAAGATGGGAATCGACCCTATGACCCATCAACCTCTACCA-CAAGAACATTC 525
||||||||||||||||||||||| ||||||||||||||||| ||| | ||||||| |||
Sbjct 479 AAACTTCTTAAGATGGGAATCGATCCTATGACCCATCAACCCCTAA-ATCAAGAACCTTC 537
Query 526 TAATATAGGTAATTCCAAAACCATTTCGTCGAATCCAGAAGACGCTATATCAGTGGAACC 585
|||||| | |||||||||||||||| |||| |||||||| || | | | ||||||||||
Sbjct 538 TAATATCGATAATTCCAAAACCATTCCGTCCAATCCAGACGATG-TCT--CAGTGGAACC 594
Query 586 AAAGACAACAAACACCAAAGACGTGGAGATAAGTGGCACGACAACAGAAGAAGAAAGTAG 645
||||||||| ||||| ||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 595 AAAGACAACTAACACGAAATACGTGGAGATAAGTGTCACGACAACAGAAGAAGAAAGTAG 654
Query 646 TAGCACGGTTACTGATCAAAACAGTTCGATGGATAGTGAAAATCATCTAATTGACAACAT 705
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 655 TAGCACGGTTACTGATCAAAACAGTTCGATGGATAATGAAAATCATCTAATTGACAACAT 714
Query 706 TTATAATGATGATGAATTGTTTAGTTACTTATGGTCCGACGAAACTACTAAAGCTGAGGC 765
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 715 TTATGATGATGATGAATTGTTTAGTTACTTATGGTCCGACGAAACTACTAAAGATGAGGC 774
Query 766 CTCGTGGAGTGATAGTAACTTTGGCGTTGGTGGAACATTATATGACAATAATATTTCCGG 825
||| |||||||||||||||||||| ||||||||||||||||||||| | ||||| |||||
Sbjct 775 CTCTTGGAGTGATAGTAACTTTGGTGTTGGTGGAACATTATATGACCACAATATCTCCGG 834
Query 826 CGGCGATGCAGATTATCCGATATGGTCACCGGAAAGAATCAACGACGAGAAGATGTTTTT 885
|| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 835 CGCCGATGCAGATTTTCCGATATGGTCACCGGAAAGAATCAATGACGAGAAGATGTTTTT 894
Query 886 GGATTATTGTCAAGACTTTGGTGTTCATGATTTTGGGTTTTGACTGTTCACCATT-ATCA 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 895 GGATTATTGTCAAGACTTTGGTGTTCATGATTTTGGGTTTTGACTGTTCACCATTGA-CA 953
Query 945 TATTGGCAACTCTCTGGa 962
||||||||||||| ||||
Sbjct 954 TATTGGCAACTCTATGGA 971
Score = 292 bits (158), Expect = 4e-78
Identities = 197/215 (92%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 962 acatatacatatatgtgtacattatatataacatatatacacacatacaaatcataaaca 1021
||||||| |||||| |||||||||||| ||| | |||||||| ||||||||||||||||
Sbjct 1019 ACATATATATATATATGTACATTATATGTAA-ACATATACACGCATACAAATCATAAAC- 1076
Query 1022 tatagtagaagataatacatCCATGTAAAGCAGTAAGTGTGCACCATGGTTTTCAAGTAT 1081
|| ||| | ||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1077 -AT-GTA-AGGATAATAAATCCATGTAAAGCAGTAAGGGTGCACCATGGTTTTCAAGTAT 1133
Query 1082 TATTAATTAGGGTTTGGTAGGGTTTCGTCAAAGTCAAGAATACATATT-AAGTTTACTTT 1140
||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||
Sbjct 1134 TATTAATTAGGGTTTGGTAGGATTTCGTCAAAGTCAAGAATACAGATTGAAGTTTACTTT 1193
Query 1141 CTTTGTTTTGTATAAATTATTCACATGTTAACAAA 1175
|||||||||||||||||||||||||| || |||||
Sbjct 1194 CTTTGTTTTGTATAAATTATTCACATATTCACAAA 1228
Score = 119 bits (64), Expect = 8e-26
Identities = 77/83 (93%), Gaps = 1/83 (1%)
Strand=Plus/Plus
Query 1176 TATGTTTCAATATTAGGGTCCAACGTTATGTTTAAACAAAACTCTTAAAATTTGAGACAC 1235
||||||||| |||||||||||||| ||| |||||||||||||| | |||| |||||||||
Sbjct 1263 TATGTTTCAGTATTAGGGTCCAACTTTACGTTTAAACAAAACT-TAAAAAATTGAGACAC 1321
Query 1236 TAGTTCTCTCCTGCATATCTTTG 1258
|||||||||||||||||||||||
Sbjct 1322 TAGTTCTCTCCTGCATATCTTTG 1344
> AT4G12350.1 | Symbols: MYB42, AtMYB42 | myb domain protein 42
| chr4:7324912-7326636 FORWARD LENGTH=861
Length=861
Score = 411 bits (222), Expect = 1e-113
Identities = 335/389 (86%), Gaps = 10/389 (3%)
Strand=Plus/Plus
Query 125 ATGGGGAGGCAGCCATGCTGTGACAAGCT-AGGGGTGAAGAAAGGGCCGTGGACGGCGGA 183
||||| ||||||||||| ||||||||||| | ||||||||| |||||||||||||||||
Sbjct 1 ATGGGAAGGCAGCCATGTTGTGACAAGCTCA-TGGTGAAGAAGGGGCCGTGGACGGCGGA 59
Query 184 GGAAGACAAGAAGCTCATAAACTTCATACTC-ACCAACGGCCATTGTTGCTGGCGTGCTT 242
|||||||||||| || |||||||| || || ||||||||||| ||||||||| | ||||
Sbjct 60 GGAAGACAAGAAACTGATAAACTTTAT-CTTGACCAACGGCCACTGTTGCTGGAGGGCTT 118
Query 243 TGCCGAAGCTGGCCGGTCTCCGCCGTTGTGGAAAGAGCTGCCGCCTCCGGTGGACTAACT 302
|||||||||||||||||||||| || ||||| ||||||||||| || |||||||| || |
Sbjct 119 TGCCGAAGCTGGCCGGTCTCCGTCGCTGTGGGAAGAGCTGCCGTCTACGGTGGACCAATT 178
Query 303 ATCTCCGGCCTGACTTGAAGAGAGGCCTTCTTTCTC-ATGATGAAGAACAACTTGTAATT 361
||||||| ||||||||||||||||| ||||| || | | | || ||||| ||||| ||
Sbjct 179 ATCTCCGACCTGACTTGAAGAGAGGTCTTCTCTC-CGACGCCGAGGAACAGCTTGTCATC 237
Query 362 GATCTTCATGCGCATCTCGGAAATA-AGTGGTCTAAGATAGCTTCAAGATTACCTGGAAG 420
|| |||||||| | |||||| || | | ||||| ||||| ||| |||||||||| |||||
Sbjct 238 GACCTTCATGCTCTTCTCGGCAACAGA-TGGTCCAAGATCGCTGCAAGATTACCAGGAAG 296
Query 421 AACAGATAACGAAATAAAAAACCATTGGAATACTCATATCAAGAAAAAACTTCTTAAGAT 480
|||||| |||||||||||||| ||||||||||||||||||||||| || || ||||||||
Sbjct 297 AACAGACAACGAAATAAAAAATCATTGGAATACTCATATCAAGAAGAAGCTCCTTAAGAT 356
Query 481 GGGAATCGACCCTAT-GACCCATCAACCT 508
|| |||||| ||| | |||||||||||||
Sbjct 357 GGAAATCGATCCT-TCGACCCATCAACCT 384
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61847071440
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5