BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492602
Length=1576
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22670.1 | Symbols: AtHip1, HIP1, TPR11 | HSP70-interacting ... 2102 0.0
> AT4G22670.1 | Symbols: AtHip1, HIP1, TPR11 | HSP70-interacting
protein 1 | chr4:11918080-11920910 FORWARD LENGTH=1721
Length=1721
Score = 2102 bits (1138), Expect = 0.0
Identities = 1503/1659 (91%), Gaps = 106/1659 (6%)
Strand=Plus/Plus
Query 1 TTCTCCAAATTCTCGAAATCGAAACACACGACTT-AAACAGAAAAAGACGAGACTTTTAA 59
||| ||||||||||||||||| || ||||||||| |||| ||||||||||||||||||||
Sbjct 25 TTCCCCAAATTCTCGAAATCG-AA-ACACGACTTAAAAC-GAAAAAGACGAGACTTTTAA 81
Query 60 CACTCAGACCTAAACCAACACTCTTCCTC--T-T-TCTCTCTCTCGCCGATCGGAAGCAG 115
||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||
Sbjct 82 CACTCAGACCTAAACCAACACTCTTCCTCTTTCTATCTCTCTCTCGCCGATCGGAAGCAG 141
Query 116 AtttttttCTC-GAAGGATGGATTCAACGAAGCTTAGTGAACTCAAGGTCTTCATCGATC 174
| |||||||| ||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 142 A--TTTTTCTCAAAAGGATGGATTCAACGAAGCTTAGTGAGCTAAAGGTCTTCATCGATC 199
Query 175 AATGCAAGTCTGACCCTTCTCTTCTCACTACTCCTTCCCTCTCCTTCTTCCGCGACTATC 234
||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||
Sbjct 200 AATGCAAGTCTGACCCTTCCCTTCTCACTACTCCTTCACTCTCCTTCTTCCGTGACTATC 259
Query 235 TCGAGAGTCTTGGTGCTAAGATACCTACTGGTGCT-CATGAAGAAGACAAAGACACCAAG 293
||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||
Sbjct 260 TCGAGAGTCTTGGTGCTAAGATACCTACTGGTG-TCCATGAAGAAGACAAAGACACTAAG 318
Query 294 ACGAGGAGTTTCGTAGTGGAAGAGAGTGATGATGATATGGAGGAAACTGAAGAAGCGAAA 353
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 319 CCGAGGAGTTTCGTAGTGGAAGAGAGTGATGATGATATGGATGAAACTGAAGAAGTAAAA 378
Query 354 CCGAAAGTGGAGGAAGAAGAAGAAGAGGATGAGATTGTTGAATCTGATGTAGAGCTTGAA 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 379 CCGAAAGTGGAGGAAGAAGAAGAAGAGGATGAGATTGTTGAATCTGATGTAGAGCTTGAA 438
Query 414 GGAGACACTGTTGAACCTGATAATGATCCTCCTCAGAAGATGGGGGATTCATCAGTGGAG 473
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 439 GGAGACACTGTTGAGCCTGATAATGATCCTCCTCAGAAGATGGGGGATTCATCAGTGGAG 498
Query 474 GTGACTGATGAGAATCGTGAAGCTGCTCAAGAAGCTAAGGGCAAAGCCATGGAGGCCCTT 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 499 GTGACTGATGAGAATCGTGAAGCTGCTCAAGAAGCTAAGGGCAAAGCCATGGAGGCCCTT 558
Query 534 TCTGAAGGAAACTTTGATGAAGCAATTGAGCATTTAACTCAGGCAATAACGTTGAACCCG 593
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 559 TCTGAAGGAAACTTTGATGAAGCAATTGAGCATTTAACTCGGGCAATAACGTTGAACCCG 618
Query 594 ACTTCAGCTATTATGTATGGAAACAGAGCTAGTGTCTACATTAAGTTGAAGAAGCCAAAC 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 619 ACTTCAGCTATTATGTATGGAAACAGAGCTAGTGTCTACATTAAGTTGAAGAAGCCAAAC 678
Query 654 GCTGCTATTCGTGATGCAAATGCAGCATTGGAGATTAACCCTGATTCTGCCAAGGGATAC 713
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 679 GCTGCTATTCGAGATGCAAACGCAGCATTGGAGATTAACCCTGATTCTGCCAAGGGATAC 738
Query 714 AAGTCACGGGGTATGGCTCGTGCCATGCTTGGAGAATGGGCAGAGGCTGCGAAAGACCTT 773
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 739 AAGTCACGAGGTATGGCTCGTGCCATGCTTGGAGAATGGGCAGAGGCTGCAAAAGACCTT 798
Query 774 CACCTTGCATCTACAATAGACTATGATGAGGAAATTAGCGCTGTTCTCAAAAAGGTTGAA 833
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 799 CACCTTGCATCTACGATAGACTATGATGAGGAAATTAGTGCTGTTCTCAAAAAGGTTGAA 858
Query 834 CCTAATGCACATAAGCTTGAGGAGCACCGTAGGAAGTATGACAGATTACGTAAGGAAAGA 893
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 859 CCTAATGCACATAAGCTTGAGGAGCACCGTAGAAAGTATGACAGATTACGTAAGGAAAGA 918
Query 894 GAGGACAAAAAGGCTGAACGTGATAGACTACGTCGCCGTGCTGAAGCACAGGCTGCCTAT 953
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 919 GAGGACAAAAAGGCTGAACGGGATAGATTACGTCGCCGTGCTGAAGCACAGGCTGCCTAT 978
Query 954 GATAAAGCTAAGAAAGAAGAACAGTCATCGTCTAGCAGA-C--C---A-------T--CA 998
||||||||||||||||||||||||||||| ||||||||| | | | | ||
Sbjct 979 GATAAAGCTAAGAAAGAAGAACAGTCATCATCTAGCAGACCATCAGGAGGCGGTTTCCCA 1038
Query 999 GGA-G---G--C---GGTTTCCCAGGAGGTATGCCCGGCGGATTCCC--------T-GGA 1040
||| | | | ||||||||||||||||||||||| |||||||| | |||
Sbjct 1039 GGAGGTATGCCCGGTGGTTTCCCAGGAGGTATGCCCGGTGGATTCCCAGGAGGAATGGGA 1098
Query 1041 GGAATGCCTGGCGGATTCCC---AGG-A-----GGAATGGGCGGTATGCCAGGTGGATTC 1091
|| ||||| ||||||||||| ||| | || |||||||||||||| |||||||||
Sbjct 1099 GGCATGCCCGGCGGATTCCCGGGAGGAATGGGTGGTATGGGCGGTATGCCCGGTGGATTC 1158
Query 1092 CCAGGAGGAATGGGCGGTATGCCCGGTGGATTCCCAGGGGGAATGGGCGGTGGTATGCCC 1151
||||||||||||||||| | ||| | | || | |||||||||||||||||| ||
Sbjct 1159 CCAGGAGGAATGGGCGG--T----GGT--A-TGCCTGCAGGAATGGGCGGTGGTATG-CC 1208
Query 1152 GCAGGAATGGGTGGTGGTATGCC--C-GGAATGGGCGGT---GGTATGCCAGGTGCA--- 1202
| |||||||| ||||||||||| | |||||||| ||| |||||||||||||||
Sbjct 1209 -C-GGAATGGGCGGTGGTATGCCTGCTGGAATGGGTGGTGGCGGTATGCCAGGTGCAGGC 1266
Query 1203 ----G---G-C-GGTGGTGGCGGTATGCCTGGTGGTATGGACTTCAGCAAAATATTGAAT 1253
| | | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1267 GGTGGTATGCCTGGTGGTGGCGGTATGCCTGGTGGTATGGACTTCAGCAAAATATTGAAT 1326
Query 1254 GATCCTGAGCTAATGACGGCATTTAGCGACCCAGAAGTTATGGCTGCTCTTCAAGATGTG 1313
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1327 GATCCTGAGCTAATGACGGCATTTAGCGACCCTGAAGTCATGGCTGCTCTTCAAGATGTG 1386
Query 1314 ATGAAGAACCCTGCGAATCTAGCGAAGCATCAGGCGAATCCGAAGGTGGCTCCGGTGATT 1373
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1387 ATGAAGAACCCTGCGAATCTAGCGAAGCATCAGGCGAATCCGAAGGTGGCTCCCGTGATT 1446
Query 1374 GCAAAGATGATGGGCAAATTTGCAGGACCTCAGTAAACAAAACAACAAGTTTTCTTCTTC 1433
||||||||||||||||||||||||||||||||||||||||||||| ||| || ||| |||
Sbjct 1447 GCAAAGATGATGGGCAAATTTGCAGGACCTCAGTAAACAAAACAAGAAGCTTGCTT-TTC 1505
Query 1434 TCTTTGCCAATTTCTGTGTTTAACTGCGTGAGATAAGAGATATGTTGGAGA--ttttctt 1491
| || |||||||||||||||||| ||||||||||||||||||||||||||| |||| ||
Sbjct 1506 T-TT-GCCAATTTCTGTGTTTAATTGCGTGAGATAAGAGATATGTTGGAGAACTTTTGTT 1563
Query 1492 tttcttttatgttttcgttggagaggaactt---c-----------tcttttctcttcGT 1537
|| |||||||||| |||||| |||||||||| | ||||||||||||||
Sbjct 1564 TT-CTTTTATGTTGTCGTTGCAGAGGAACTTTAACAGGAACAAAACTCTTTTCTCTTCGT 1622
Query 1538 TAGTAATTTACCCTTTTTCTCGTGCTTCACTTCCCGAGT 1576
||||||| |||||| || ||||| ||||||||| ||||
Sbjct 1623 TAGTAATCTACCCTCTT-CTCGTTTTTCACTTCCTGAGT 1660
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77810844750
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5