BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492604
Length=589
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22666.1 | Symbols: | Bifunctional inhibitor/lipid-transfer... 843 0.0
> AT4G22666.1 | Symbols: | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein | chr4:11917057-11917879
FORWARD LENGTH=733
Length=733
Score = 843 bits (456), Expect = 0.0
Identities = 547/591 (93%), Gaps = 6/591 (1%)
Strand=Plus/Plus
Query 1 ATGTAGTGTTTAAGAAGTCACATACGAAAAAGAAAGTGAGATAATAATAATCCaaaaaaa 60
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 12 ATGCAGTGTTTAAGAAGTCACATACGAAAAAGAAAGTGAG---ATAATAATCCAAAAAAA 68
Query 61 aaaCT-CTTGTTTTTGCCAACG-TTTTAGACGATCAAATGGCTTACATTTACCAAATTTC 118
||| | | | |||||||||||| |||||||||||||||||||||||| | ||||||||||
Sbjct 69 AAA-TCCATATTTTTGCCAACGTTTTTAGACGATCAAATGGCTTACACTAACCAAATTTC 127
Query 119 AGCAGTTGTGTTTCTAGCGGTTGCGATTGCTCCGCTATTAGCTGACCCACAGTCACCGAT 178
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 128 AGCGGTTGTGTTTCTAGCGGTTGCGATTGCTCCGCTATTAGCTGAGCCACAGTCAACGAT 187
Query 179 GTTTCCCGATATGACTCCTGAATGTGCCACGGTTATGCCTGACCTGCTCGAAAAGTGTTT 238
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 188 GTTTCCAGAGATGACTCCTGAATGTGCCACGGTTATGCCTGACCTGCTCGAAAAGTGTTT 247
Query 239 CGCAACCGGTAGTGTGACGCCAACAGAAGATTGCTGCACCGATCTAAAATCCGCAACCTC 298
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 248 TGCAACCGGTAGTGTGACGCCAACAGAAGATTGCTGCACCGATCTAAAATCCGCAACCTC 307
Query 299 AACGCAAGTCACTTGCCTTTGTGATAACTACATTGCAAATCCGGCCGTTGCGAACATCAC 358
||||||||| ||||| ||||||||||||||||| ||||| || |||||| | ||||||||
Sbjct 308 AACGCAAGTGACTTGTCTTTGTGATAACTACATAGCAAACCCCGCCGTTTCAAACATCAC 367
Query 359 TGGACCTTACTCCAAAGCAATCACAACCAAATGCGGCGTTTTCGACAAATTCTCTTGCGA 418
|||||||||||||||||||||||||| ||||| |||||||||||||||| |||||| ||
Sbjct 368 CGGACCTTACTCCAAAGCAATCACAACTAAATGTGGCGTTTTCGACAAATACTCTTGTGA 427
Query 419 CGGTACTAGTAAAGGAGGAGAAGAAAAGAAAGGAGGAAGCAGCAGTAGCAACGGCAAAGG 478
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 428 CGGTACTAGTAAAGGAGGAGAAGAAAAGAAAGGAGGAAGCAGCAGTAGCAATGGTAAAGA 487
Query 479 CAATGGCACGAGTCAGGGAAATGGAGGAACAACGAACAAGGTTGCTGCATTAATGGCTAT 538
|||||||| |||| ||||||||||||||| | ||||| ||||||||||| |||||||||
Sbjct 488 CAATGGCAAGAGTGAGGGAAATGGAGGAAGAGCGAACTCGGTTGCTGCATCAATGGCTAT 547
Query 539 GTTTGGTTTGGTTGCAAGTCTGGTCTTTGTTATGTTTTGATTTAGTTATTT 589
|||||||||| |||||||||| ||||| || ||||||| ||||||||||||
Sbjct 548 GTTTGGTTTGCTTGCAAGTCTCGTCTTCGTAATGTTTTAATTTAGTTATTT 598
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28332058908
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5