BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg492605

Length=448
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G22640.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer...   593    4e-169


> AT4G22640.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer 
protein/seed storage 2S albumin superfamily protein | chr4:11911600-11912107 
FORWARD LENGTH=508
Length=508

 Score =  593 bits (321),  Expect = 4e-169
 Identities = 409/451 (91%), Gaps = 8/451 (2%)
 Strand=Plus/Plus

Query  1    AAAAGATTAAACCTTTGTTTTTGCCGGCGATCATGGCTTACACAAACAAAGTTACGGCAG  60
            |||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||  | 
Sbjct  27   AAAATATTAAACCTCTGTTTTTGCTGGCGATCATGGCTTACACAAACAAAGTTACGATAT  86

Query  61   CGGCTACGGTTGCGACAGTGGTGCTGTTTCTAGCGGTTACGATTGTGGATGCACAGTCAA  120
            | ||  ||||||||||| || |||||||||| ||||||||||| ||||||||||||||||
Sbjct  87   CAGCCGCGGTTGCGACAATGATGCTGTTTCTGGCGGTTACGATCGTGGATGCACAGTCAA  146

Query  121  TGCCACCAATGCCAAAGTTGAATCCTGTGTGCGCGTTGGCGGAACTCCCAAATATCGTCC  180
            ||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||
Sbjct  147  TGCCACCAATGCCAAAGTTTAATCCTGTGTGCGCGTTGGCGGATCTCCCAAACATCGTCC  206

Query  181  AACTTTGCTACTTTAACTTGGATTTGGTGCCATCTGAAGAGTGCTGCAATGATCTCAAAT  240
            ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||
Sbjct  207  AACTTTGCTACTTTAACTTGGATTTGACGCCATCTGAAGAGTGCTGCAATGATCTCAAAT  266

Query  241  CGTCGAGCAATATACAAGTGAATTGTCTCTGCGACAATTTCATTGCACATCCTTCCAACG  300
            |||||||||  |||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct  267  CGTCGAGCACGATACAAGTGAATTGTCTCTGTGACAATTTCATTGCACATCCTTCCAATG  326

Query  301  GCAATATCACT-AGAGCTCGCTACGACCTAGTAAACAGCGCCTGTGGCGTTGCCGACAAA  359
            |||||||| |  | ||||||||||||||| || |||||||||||||| ||||||||||||
Sbjct  327  GCAATATCTCGCA-AGCTCGCTACGACCTGGTCAACAGCGCCTGTGGTGTTGCCGACAAA  385

Query  360  TTTGCATGTAAAGGTATGTTTTAATCTCTGATTTTCATGGCTTTTCCTTTAGTATT--GT  417
            || |||||||||||||| |||||| |    ||||||||||||| ||| ||||||||  ||
Sbjct  386  TTCGCATGTAAAGGTATCTTTTAAAC----ATTTTCATGGCTTGTCCCTTAGTATTTTGT  441

Query  418  TCAAACTACATTTTGTTTTCAATAGGACAAA  448
            |||||||||||| |||||||||||| |||||
Sbjct  442  TCAAACTACATTATGTTTTCAATAGAACAAA  472



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21313525576


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5