BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg492606

Length=447
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G22620.1 | Symbols:  | SAUR-like auxin-responsive protein fa...   614    3e-175


> AT4G22620.1 | Symbols:  | SAUR-like auxin-responsive protein 
family  | chr4:11907631-11908113 FORWARD LENGTH=483
Length=483

 Score =  614 bits (332),  Expect = 3e-175
 Identities = 409/446 (92%), Gaps = 6/446 (1%)
 Strand=Plus/Plus

Query  1    ATGAAGAAGCTTCGAGGTTTCAAGATTGGACACAGGTTCGTCAAGATCTTCAAATGGATA  60
            ||||||| ||| |||||||| ||||| |||||||| ||||||||||||||||||||||||
Sbjct  1    ATGAAGAGGCTCCGAGGTTTTAAGATCGGACACAGATTCGTCAAGATCTTCAAATGGATA  60

Query  61   ATCCGAAGTAGAAGAATCCAAACCGGGAAACGCCAATGCCTGACCGGAATTCTCAACCCG  120
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   ATCCGAAGTAGAAGAAACCAAACCGGGAAACGCCAATGCCTGACCGGAATTCTCAACCCG  120

Query  121  GTTACAAAAATCTACTCTTTAGCACGGCGGTGTATCCGTCGTGGAGCCAATAGACTGTGC  180
            ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct  121  GTTACAAAAATCTACTCTTTAGCACGGCGGTGTCTCCGTCGTGGAGCTAATAGACTGTGC  180

Query  181  GGAGGAAAGAAACAAGTTCA-A-----CTTGGTAACGAACCGAAGACGCCGTCAGTTCCA  234
            ||||||| |||||  | ||| |     |||||||||||||||||||||||| ||||||||
Sbjct  181  GGAGGAATGAAACCGGGTCAGACCCGGCTTGGTAACGAACCGAAGACGCCGACAGTTCCA  240

Query  235  AAAGGGCATTTAGTGGTTCATGTCGGCGAGTCCGGCGATGATACACGGCGCGTGGTGGTT  294
            | |||||||||||||||||||||||| || ||||| || ||||| || || |||||||| 
Sbjct  241  AGAGGGCATTTAGTGGTTCATGTCGGTGAATCCGGTGAGGATACGCGACGTGTGGTGGTC  300

Query  295  CCGGTGATTTACTTTAACCATCCTCTGTTCGGAGAGTTGTTGGAGCAGGCGGAGCGGGTT  354
            ||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct  301  CCGGTGATTTATTTTAACCATCCTCTGTTCGGAGAGTTGTTGGAACAGGCAGAGCGGGTT  360

Query  355  TACGGGTTTGATCAACCGGGTCGGATCACGATACCGTGTCGGGTTTCGGATTTTGAAAAG  414
            ||||||||||| |||||||||||||| | |||||| |||||||||||||||||||| |||
Sbjct  361  TACGGGTTTGAACAACCGGGTCGGATTATGATACCTTGTCGGGTTTCGGATTTTGAGAAG  420

Query  415  GTTCAGATGAGGATCGCCGCATGGGA  440
            ||||||||||||||||| ||||||||
Sbjct  421  GTTCAGATGAGGATCGCTGCATGGGA  446



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21263257827


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5