BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492611
Length=1525
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22580.1 | Symbols: | Exostosin family protein | chr4:11889... 2182 0.0
> AT4G22580.1 | Symbols: | Exostosin family protein | chr4:11889098-11890725
REVERSE LENGTH=1628
Length=1628
Score = 2182 bits (1181), Expect = 0.0
Identities = 1381/1474 (94%), Gaps = 28/1474 (2%)
Strand=Plus/Plus
Query 1 AAACTACCACTCTCACTCCGACAACCTCCATAACAATGGCTTTCAAATCCACCGTCACAA 60
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 2 AAACTACCACTCTCACTCCGACAACATCCATAACAATGGCTTCCAAATCCACCGTCACAA 61
Query 61 CATTGACCA---------tcttcttcttcttcttcGTCGAGCCTAGGGTTGTTTCACAGC 111
||||||||| ||||||||||||||||| ||||||||| |||| || ||||
Sbjct 62 CATTGACCATCTTCTTCTTCTTCTTCTTCTTCTTCATCGAGCCTAAGGTTCAGTCTCAGC 121
Query 112 AAATCTCAGCCGTCGATTCAGAATGCACCAACCGTTGGATCCACATCCGTACACTCCCAT 171
||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 122 AAATCTCAGCCGTTGATTCAGAATGCACCAACCGTTGGATTCACATCCGAACACTCCCAT 181
Query 172 CACGATTCAATCTCGATCTTCTCTCAACTTGTAATCGTTACCCAATCACCGACGATCTTT 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 CACGATTCAATCTCGATCTTCTCTCAACTTGTAATCGTTACCCAATCACCGACGATCTTT 241
Query 232 GCCCTTACTTAGCCAATCACGGACTCGGCCCAAAAACCCATACCCGTACTCGAAGCTGGT 291
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 242 GCCCTTACTTAGCCAATCACGGACTCGGCCCAAAAACCCATACCCGTACCCGAAGCTGGT 301
Query 292 ATCGAACCGACCCGTTACTTCTCGAACTCATTTTCCACCGTCGGATTCTCGAATATCCAT 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 ATCGAACCGACCCGTTACTTCTCGAACTCATTTTCCACCGTCGGATTCTCGAATATCCAT 361
Query 352 GTCTCACACCCGACCCGGATCTAGCCTCCGCCGTTTATCTCCCTTACTACGCCGGTATCG 411
||||||||||||||||| |||| |||||||| | || ||||||||||||||||| ||||
Sbjct 362 GTCTCACACCCGACCCGAATCTCGCCTCCGCAATCTACCTCCCTTACTACGCCGGCATCG 421
Query 412 ATTCTCTCCGTTATCTCTACGGACCCGATTTAAACTCAAGCGCTGATCACGGGTCGGATC 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 ATTCTCTCCGTTATCTCTACGGACCCGATTTAAACTCAAGCGCTGATCACGGGTCGGATC 481
Query 472 TTCTCGAGTTTTTGACCCGTGATCAACCCGAGATCTGGTCTCGTCGCTCCGGTCATGATC 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 TTCTCGAGTTTTTGACCCGTGATCAACCCGAGATCTGGTCTCGTCGCTCCGGTCATGATC 541
Query 532 ATTTCCTCGTTATGGCTCGACCCGCTTGGGATTTCTCTCAGCCGTTGACCGTTGACCCTC 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 ATTTCCTCGTTATGGCTCGACCCGCTTGGGATTTCTCTCAGCCGTTGACCGTTGACCCTC 601
Query 592 CGATTTGGGGCACGTCGTTTCTAGAACGCCGTGAGTTTTTCAATCTAACGGCGTTAACTC 651
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 CGATTTGGGGAACGTCGTTTCTAGAACGCCGTGAGTTTTTCAATCTAACGGCGTTAACTC 661
Query 652 TCGAATCTCGTTTCTGGCCGTGGCAAGAACAAGCCGTCCCTTATCCGACGTCGTTTCACC 711
|||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 662 TCGAATCTCGTTACTGGCCGTGGCAAGAACAAGCCGTTCCTTATCCGACGTCGTTTCATC 721
Query 712 CACACAGCTTGCCGTTTTTGGAATCGTGGATCCGTCGTGTCCGTCGCTCACGGCGAACTT 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 CACACAGCTTGCCGTTTTTGGAATCGTGGATCCGTCGTGTCCGTCGCTCACGGCGAACTT 781
Query 772 CTCTTATGCTATTCGCCGGCGGCGGAGGTACCTCCTCTTCTCCGAACATCCGTCGTAGTA 831
|||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||
Sbjct 782 CTCTTATGCTATTCGCCGGCGGTGGTGGTACCTCCTCTTCTCCTAACATCCGTCGTAGTA 841
Query 832 TCCGATTAGAGTGTACAAACGTAAACGCCAC-CGAATCGGAATTGAAATCGGATAAAATC 890
|||| |||||||| || | | ||||||| || | ||||||| | || | | ||| ||
Sbjct 842 TCCGCTTAGAGTGCACTAGCATAAACGCAACAC-AATCGGA-T--AA-T---A-AAA-TC 891
Query 891 TGCGATTTTGTTGATTGCTCTAATGGAATCTGTGAGCATGATCCGCTTAGATTCATGAGA 950
|||||||| || ||||| ||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 892 TGCGATTTCGTCGATTGTTCTAACGGAATCTGTGAGCATGATCCGATTAGATTCATGAGA 951
Query 951 CCAATGTTACAATCATCGTTTTGCTTACAACCACCAGGAGATACACCAACACGTAAAGCT 1010
|| |||||||||||||||||||| ||||||||||| ||||||||||||||| | ||||||
Sbjct 952 CCGATGTTACAATCATCGTTTTGTTTACAACCACCGGGAGATACACCAACAAGGAAAGCT 1011
Query 1011 ACATTCGACGGAATCATCGCCGGATGTATACCGGTGTTTTTCGAAGACCAAACGGCGAAA 1070
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1012 ACATTCGACGGAATCATCGCCGGATGTATACCGGTGTTTTTCGAGGATCAAACGGCGAAA 1071
Query 1071 ATGCAGTACAAATGGCATTTACCGGAATCCGAATTCGCGCAGTTTTCGGTTACGATTCCG 1130
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 1072 ATGCAGTACAAATGGCATTTACCGGAGTCCGAATTCGCGGAGTTTTCGGTTACGATTCCG 1131
Query 1131 AAAGAAGATGTTGTATTTAGAGGAGTTAGAATCCAAGATGTGTTGATGAGTATACCTAAA 1190
|| |||||||| || ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1132 AAGGAAGATGTAGTGTTTAGAGGAGTTAGAATACAAGATGTGTTGATGAGTATACCTAAA 1191
Query 1191 GAAGAAGTTACGAGAATGAGAGAAAGAGTTATAGAGATGATGCCTAGAGTTATGTATAGA 1250
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 GAAGAAGTTACTAGAATGAGAGAAAGAGTTATAGAGATGATGCCTAGAGTTATGTATAGA 1251
Query 1251 AGACATGGAGCTTCAATGGGATTGATGAATAAGAAAGATGCTGTTGATATTGCCATTGAT 1310
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1252 AGACATGGAGCTTCAATGGGATTGATGAATAAGAAAGATGCTGTTGATATTGCTATTGAT 1311
Query 1311 GGAGTTTTGGACAAGATTAAATCTAGAGTTTGATGATTAGTAACATCACTTATAAACAGG 1370
||||||||||||| ||||| |||||||||||||| ||| ||||| || || ||||||||
Sbjct 1312 GGAGTTTTGGACAGGATTATATCTAGAGTTTGATTCTTACTAACAACAGTTTTAAACAGG 1371
Query 1371 TATGTATAATGTTGTTGTTTGTTTAG-TTATTTATACTTAAAAATTC-TTTTTGATTGTT 1428
||||||| ||||||||||||||||| || || |||||| ||||||| ||||||||||||
Sbjct 1372 TATGTATTATGTTGTTGTTTGTTTAAATTGTT-ATACTTCAAAATTCATTTTTGATTGTT 1430
Query 1429 --TGTTGGATGCAAAATCTCATTGAGATTTTTTG 1460
|||| ||| |||||||||||||||||||||
Sbjct 1431 CATGTT---TGCCAAATCTCATTGAGATTTTTTG 1461
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75250616955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5