BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492612
Length=848
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22570.1 | Symbols: APT3 | adenine phosphoribosyl transferas... 1146 0.0
AT4G12440.2 | Symbols: APT4 | adenine phosphoribosyl transferas... 512 2e-144
> AT4G22570.1 | Symbols: APT3 | adenine phosphoribosyl transferase
3 | chr4:11882126-11885421 REVERSE LENGTH=907
Length=907
Score = 1146 bits (620), Expect = 0.0
Identities = 700/738 (95%), Gaps = 8/738 (1%)
Strand=Plus/Plus
Query 115 TCTCTTCGTTGACAATGTCGGGAAACAAAGAAGAAGAGGATCCTCGTATCCATGGAATCA 174
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 158 TCTCTTCGTCGACAATGTCGGGAAACAAAGAAGAAGAGGATCCTCGTATCCATGGAATCA 217
Query 175 AAACTAAGATCCGTGTCGTTCCAGATTTTCCCAAGAAAGGAATAATGTTTCAGGACATAA 234
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 218 AAACTAAGATCCGTGTCGTTCCAGATTTTCCCAAGAAAGGAATAATGTTTCAAGACATAA 277
Query 235 CAACAGTGTTGTTGGATCCGAAAGCCTTCAAAGACACAATTGATCTATTTGTGGAGAGGT 294
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 278 CAACAGTGTTGTTGGATCCGAAAGCCTTCAAAGACACAATTGATCTGTTTGTGGAGAGGT 337
Query 295 ACAGAGACAAGAACATCTCAGTGGTTGCAGGAATAGAGGCTCCCGGTTTCCTATTCGGTC 354
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 338 ACAGAGACAAGAACATCTCAGTGGTTGCAGGAATAGAGGCTCGTGGTTTCCTATTCGGTC 397
Query 355 CACCAATCGCGCTAGCCATTGGAGCAAAATTCGTCCCTCTTCGGAAACCCAAGAAACTGC 414
|||| |||||||||||||||||||||||||| || ||||| || |||||||||||||| |
Sbjct 398 CACCGATCGCGCTAGCCATTGGAGCAAAATTTGTTCCTCTGCGCAAACCCAAGAAACTAC 457
Query 415 CTGGTGAAACAATATTTGAGGAATACGAGTTAGAGTACGGAAATGACCGTCTAGAGATGC 474
||||||||||||||||||||||||||||||| || || ||||||||||| ||||||||||
Sbjct 458 CTGGTGAAACAATATTTGAGGAATACGAGTTGGAATATGGAAATGACCGCCTAGAGATGC 517
Query 475 ACATAGGAGCTGTCGAGGCTGGAGATCGAGCTTTGGTCGTTGATGATCTAATTGCGACCG 534
|||||||||| ||||||||||| |||||||||||||||||||||||||| || ||||| |
Sbjct 518 ACATAGGAGCCGTCGAGGCTGGCGATCGAGCTTTGGTCGTTGATGATCTTATCGCGACTG 577
Query 535 GTGGTACTCTCTGCGCTGCCATTAACTTGCTCGAGAGGGTTGGAGCAGAAGTTGTGGAAT 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 578 GTGGTACTCTCTGCGCTGCCATTAACTTGCTCGAGAGGGTTGGAGCAGAAGTTGTGGAAT 637
Query 595 GTGCATGTGTGATCGAGTTACCCGAATTACAGGGAAGGCAGAGACTTAAGGGGAAGCCAC 654
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 638 GTGCATGTGTGATCGAGTTACCCGAATTAAAGGGAAGGCAGAGACTTAAGGGGAAGCCAC 697
Query 655 TATGTATGCTTGTGGAGTACCGATGATGATTTTAGCTTTACTTATTTGGATAAA-TTATT 713
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 698 TATGTATGCTTGTGGAGTACCGATGATGATTTTAGCTTTACTTATTTGGATAAAATTATT 757
Query 714 CGGTTAATTAATTTGATTATGCACCGAATATTCGGATTATGCAGACTTGTTATT---GGA 770
|||||||||||||| || || ||||| ||||||||||||||||||| ||||| |||
Sbjct 758 CGGTTAATTAATTT-AT---GCTCCGAAAATTCGGATTATGCAGACTTCTTATTATTGGA 813
Query 771 TTCTAAAATACTTTGATTTAAGTTCTGGCGGATTAGCTGGAACAAATAATCCAAAGTTCT 830
||||| |||| |||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 814 TTCTACAATATTTTGATTTAAATTCTAGCGGATTAGCTGGAACAAATAATCCAAAGTTCT 873
Query 831 TTGCTGTTAAAAAGTAGT 848
|||||||| ||||| |||
Sbjct 874 TTGCTGTTTAAAAGCAGT 891
Score = 135 bits (73), Expect = 5e-31
Identities = 109/125 (87%), Gaps = 7/125 (6%)
Strand=Plus/Plus
Query 1 AATAGTGGTAAGAGTACTATGACTGCTTCACTTTCTCTTTCTCTTT-GAACAag-aga-- 56
|||||||||||||||| ||||||||||||||||||||||||||||| | |||| ||
Sbjct 1 AATAGTGGTAAGAGTAGTATGACTGCTTCACTTTCTCTTTCTCTTTTGTTCAAGTAGTTT 60
Query 57 gagagagagaa-agaaga-gaagaTACCCTTAAAGAAAAACAGAGGATTTACATTCTCTG 114
| ||||||||| |||||| ||||| |||||| ||| |||||||||||||| |||||||||
Sbjct 61 GGGAGAGAGAAGAGAAGAAGAAGACACCCTTTAAGCAAAACAGAGGATTTTCATTCTCTG 120
Query 115 TCTCT 119
| |||
Sbjct 121 T-TCT 124
> AT4G12440.2 | Symbols: APT4 | adenine phosphoribosyl transferase
4 | chr4:7376268-7380151 FORWARD LENGTH=580
Length=580
Score = 512 bits (277), Expect = 2e-144
Identities = 452/537 (84%), Gaps = 10/537 (2%)
Strand=Plus/Plus
Query 151 AGGATCCTCGTATCCATGGAATCAAAACTAAGATCCGTGTCGTTCCAGATTTTCCCAAGA 210
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 20 AGGATCCTCGTATCGATGGTATCAAAACTAAGATCCGTGTCGTTCCAGATTTTCCCAAGA 79
Query 211 AAGGAATAATGTTTCAGGACATAACAACAGTGTTGTTGGATCCGAAAGCCTTCAAAGACA 270
|||| |||||||| || |||||||||||| || || | ||||| |||||||| |||||||
Sbjct 80 AAGGTATAATGTTCCAAGACATAACAACACTGCTGCTAGATCCTAAAGCCTTTAAAGACA 139
Query 271 CAATTGATCTATTTGTGGAGAGGTA-CAGAGACAAGAACATCTCAGTGGTTGCAGGAATA 329
| |||||||| ||||| |||||||| | |||||| ||||||||| ||||||||||| |||
Sbjct 140 CCATTGATCTGTTTGTTGAGAGGTATC-GAGACATGAACATCTCGGTGGTTGCAGGTATA 198
Query 330 GAGGCTCCCGGTTTCCTATTCGGTCCACCAATCGCGCTAGCCATTGGAGCAAAATTCGTC 389
||||||| ||||||| |||||||| |||| ||||| ||||||| ||||||||||| ||
Sbjct 199 GAGGCTCGCGGTTTCATATTCGGTTCACCCATCGCATTAGCCATCGGAGCAAAATTTGTT 258
Query 390 CCTCTTCGGAAACCCAAGAAACTGCCTGGTGAAACAATATTTGAGGAATACGAGTTAGAG 449
|||||||| ||||| |||||| |||| || ||| ||||||||| || || ||||| |||
Sbjct 259 CCTCTTCGTAAACCAAAGAAATTGCCGGGCCAAATAATATTTGAAGAGTATGAGTTGGAG 318
Query 450 TACGGAAATGACCG-TCTAGAGATGCACATAGGAGCTGTCGAGGCTGGAGATCGAGCTTT 508
||||||| |||||| | | || ||||| | | |||||| || | || ||| |||| ||
Sbjct 319 TACGGAAGTGACCGGT-TGGAAATGCATGTTGAAGCTGTAGATTCCGGTGATAGAGCATT 377
Query 509 GGTCGTTGATGATCTAATTGCGACCGGTGGTACTCTCTGCGCTGCCATTAACTTGCTCGA 568
|||||| |||||||| ||||| ||||| || ||||| || |||||||| || |||||| |
Sbjct 378 GGTCGTAGATGATCTGATTGCTACCGGCGGGACTCTTTGTGCTGCCATGAATTTGCTCAA 437
Query 569 GAGGGTTGGAGCAGAAGTTGTGGAATGTGCATGTGTGATCGAGTTACCCGAATTACAGGG 628
| | |||||||||||||| | |||||||||||||| ||||||||||| ||| || ||||
Sbjct 438 GCGAGTTGGAGCAGAAGTAATTGAATGTGCATGTGTCATCGAGTTACCTGAACTAAAGGG 497
Query 629 AAGGCAGAGACTTA-AGGGGAAGCCACTATGTATG--CTTGTGGAGTACCGATGATG 682
|||| ||||| ||| | ||||||||| | |||||| || || ||||| ||||||||
Sbjct 498 AAGGGAGAGA-TTAGAAGGGAAGCCA-T-TGTATGTGCTCGTTGAGTATCGATGATG 551
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41342702981
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5