BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492613
Length=714
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22560.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1044 0.0
> AT4G22560.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G12450.1);
Has 380 Blast hits to 380 proteins in 21 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 6; Plants - 374; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:11880119-11881072
FORWARD LENGTH=954
Length=954
Score = 1044 bits (565), Expect = 0.0
Identities = 667/716 (93%), Gaps = 8/716 (1%)
Strand=Plus/Plus
Query 1 ATGTCGTCGTCAAGTTACAACTGTAGTCGAAAGAGCTCACATTGCGTCAAAGACGTGATC 60
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 141 ATGTCGTCGTCGAGTTACAATTGTAGTCGAAAGAGCTCACATTGCGTCAAAGACGTGATC 200
Query 61 GATACCCGATTCGGTAAGAAAAACCCGAAACCCGACCCGAATTTAAGGCGTTTGAAGTCT 120
|||||||| || | |||||||||| |||||||||||||||| |||||||||| ||||||
Sbjct 201 GATACCCGGTTAAGCAAGAAAAACCAGAAACCCGACCCGAATCTAAGGCGTTTCAAGTCT 260
Query 121 TGTCGAACCGAAACAGAGCTT-CTTAACCCG-CAAACCCGAACCCGACGAAGCAAATCTG 178
|||||||||||||||||| || ||||||||| |||| ||| |||||||||||||||||||
Sbjct 261 TGTCGAACCGAAACAGAG-TTACTTAACCCGCCAAA-CCGGACCCGACGAAGCAAATCTG 318
Query 179 CTCGAACGTCAGATGCACTGACCGAGCTGCCCGATGGTCACCCGTCAAGAAACGTGGTGG 238
| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 319 CCCGAACATCAGACGCACTGACCGAGCTGCCCGATGGTCACCCGTCAAGAAACGTAGTGG 378
Query 239 AGATTATATTCCAGTCTAGCTGGAGCTCCGACGAGTTTCCGGGTCGGATCGAGATGATTT 298
|||||||||| || || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 379 AGATTATATTTCATTCAAGCTGGAGCTCCGACGAGTTTCCGGGTCGGATCGAGATGATTT 438
Query 299 TCAAAGTTGAAAACGGGTCGAGGACTGTGACCCGGTTTGAGGAGTACAGAGAGATTGTGA 358
||||||| ||| ||||||| |||||||| |||||||| |||||||| |||||| ||||||
Sbjct 439 TCAAAGTGGAACACGGGTCAAGGACTGTAACCCGGTTCGAGGAGTATAGAGAGGTTGTGA 498
Query 359 AGTCACGTGCGGGTTTAAAC-GAGGGCACGTGTGAAGAAGAGGACGCACGGTGTTTGGCC 417
|||||||||||||||| ||| || |||||||||||||||||||| ||||||||||||||
Sbjct 499 AGTCACGTGCGGGTTTTAACGGA-GGCACGTGTGAAGAAGAGGATGCACGGTGTTTGGCT 557
Query 418 GACGGTAACGAGATGATGAGGTTTTATCCGGTTCTTGATGGGTTTAACGGTGGCGCGTGT 477
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 558 GATGGTAATGAGATGATGAGGTTTTATCCGGTTCTTGATGGGTTTAACGGTGGCGCGTGT 617
Query 478 GTTTTTGCCGGCGGGAAAGGTCAGGCGGTGTGTACGTTTTCGGGTAGTGGTGAAGCGTAC 537
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 618 GTTTTTGCCGGTGGGAAAGGTCAGGCTGTGTGTACGTTTTCGGGTAGTGGTGAAGCGTAC 677
Query 538 GTGAGTGGCGGAAGTGGCGGAGGGAGGAAGGCGATGATGATTTGTCGGGTGATAGCAGGT 597
|||||| | ||| |||||||||| ||||||||||||||||||||| | |||||||| |||
Sbjct 678 GTGAGTAGTGGAGGTGGCGGAGGAAGGAAGGCGATGATGATTTGTAGAGTGATAGCGGGT 737
Query 598 CGGGTTGATGATAG-AATCGGGTTCGGGTCGGACTCGGTAGCTGGTCGTGACGGCGAGTT 656
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 CGGGTTGATGAT-GTAATCGGGTTCGGGTCGGACTCGGTAGCTGGTCGTGACGGCGAGTT 796
Query 657 GTTTATCTTTGATACACGTGCGGTGTTGCCTTGTTTCCTAATCATTTTCAGATTGT 712
|||| |||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 797 GTTTGTCTTTGATACACGTGCGGTGTTGCCTTGTTTCTTAATCATTTTTAGATTGT 852
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34611327283
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5