BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg492613 Length=714 Score E Sequences producing significant alignments: (Bits) Value AT4G22560.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1044 0.0 > AT4G22560.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G12450.1); Has 380 Blast hits to 380 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 6; Plants - 374; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:11880119-11881072 FORWARD LENGTH=954 Length=954 Score = 1044 bits (565), Expect = 0.0 Identities = 667/716 (93%), Gaps = 8/716 (1%) Strand=Plus/Plus Query 1 ATGTCGTCGTCAAGTTACAACTGTAGTCGAAAGAGCTCACATTGCGTCAAAGACGTGATC 60 ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 141 ATGTCGTCGTCGAGTTACAATTGTAGTCGAAAGAGCTCACATTGCGTCAAAGACGTGATC 200 Query 61 GATACCCGATTCGGTAAGAAAAACCCGAAACCCGACCCGAATTTAAGGCGTTTGAAGTCT 120 |||||||| || | |||||||||| |||||||||||||||| |||||||||| |||||| Sbjct 201 GATACCCGGTTAAGCAAGAAAAACCAGAAACCCGACCCGAATCTAAGGCGTTTCAAGTCT 260 Query 121 TGTCGAACCGAAACAGAGCTT-CTTAACCCG-CAAACCCGAACCCGACGAAGCAAATCTG 178 |||||||||||||||||| || ||||||||| |||| ||| ||||||||||||||||||| Sbjct 261 TGTCGAACCGAAACAGAG-TTACTTAACCCGCCAAA-CCGGACCCGACGAAGCAAATCTG 318 Query 179 CTCGAACGTCAGATGCACTGACCGAGCTGCCCGATGGTCACCCGTCAAGAAACGTGGTGG 238 | ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 319 CCCGAACATCAGACGCACTGACCGAGCTGCCCGATGGTCACCCGTCAAGAAACGTAGTGG 378 Query 239 AGATTATATTCCAGTCTAGCTGGAGCTCCGACGAGTTTCCGGGTCGGATCGAGATGATTT 298 |||||||||| || || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 379 AGATTATATTTCATTCAAGCTGGAGCTCCGACGAGTTTCCGGGTCGGATCGAGATGATTT 438 Query 299 TCAAAGTTGAAAACGGGTCGAGGACTGTGACCCGGTTTGAGGAGTACAGAGAGATTGTGA 358 ||||||| ||| ||||||| |||||||| |||||||| |||||||| |||||| |||||| Sbjct 439 TCAAAGTGGAACACGGGTCAAGGACTGTAACCCGGTTCGAGGAGTATAGAGAGGTTGTGA 498 Query 359 AGTCACGTGCGGGTTTAAAC-GAGGGCACGTGTGAAGAAGAGGACGCACGGTGTTTGGCC 417 |||||||||||||||| ||| || |||||||||||||||||||| |||||||||||||| Sbjct 499 AGTCACGTGCGGGTTTTAACGGA-GGCACGTGTGAAGAAGAGGATGCACGGTGTTTGGCT 557 Query 418 GACGGTAACGAGATGATGAGGTTTTATCCGGTTCTTGATGGGTTTAACGGTGGCGCGTGT 477 || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 558 GATGGTAATGAGATGATGAGGTTTTATCCGGTTCTTGATGGGTTTAACGGTGGCGCGTGT 617 Query 478 GTTTTTGCCGGCGGGAAAGGTCAGGCGGTGTGTACGTTTTCGGGTAGTGGTGAAGCGTAC 537 ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 618 GTTTTTGCCGGTGGGAAAGGTCAGGCTGTGTGTACGTTTTCGGGTAGTGGTGAAGCGTAC 677 Query 538 GTGAGTGGCGGAAGTGGCGGAGGGAGGAAGGCGATGATGATTTGTCGGGTGATAGCAGGT 597 |||||| | ||| |||||||||| ||||||||||||||||||||| | |||||||| ||| Sbjct 678 GTGAGTAGTGGAGGTGGCGGAGGAAGGAAGGCGATGATGATTTGTAGAGTGATAGCGGGT 737 Query 598 CGGGTTGATGATAG-AATCGGGTTCGGGTCGGACTCGGTAGCTGGTCGTGACGGCGAGTT 656 |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 738 CGGGTTGATGAT-GTAATCGGGTTCGGGTCGGACTCGGTAGCTGGTCGTGACGGCGAGTT 796 Query 657 GTTTATCTTTGATACACGTGCGGTGTTGCCTTGTTTCCTAATCATTTTCAGATTGT 712 |||| |||||||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 797 GTTTGTCTTTGATACACGTGCGGTGTTGCCTTGTTTCTTAATCATTTTTAGATTGT 852 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34611327283 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5