BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492614
Length=755
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22550.1 | Symbols: | Phosphatidic acid phosphatase (PAP2) ... 955 0.0
> AT4G22550.1 | Symbols: | Phosphatidic acid phosphatase (PAP2)
family protein | chr4:11878137-11878920 REVERSE LENGTH=784
Length=784
Score = 955 bits (517), Expect = 0.0
Identities = 696/779 (89%), Gaps = 26/779 (3%)
Strand=Plus/Plus
Query 1 AGATCTGTTACAACAGTTATGTCTCCGTCGACGGCGGCGATTATCGTTGGTCCCATCTTA 60
||||||||||| ||||||||||||||||||||| || ||||| || | ||||||||||||
Sbjct 7 AGATCTGTTACGACAGTTATGTCTCCGTCGACGACGACGATTTTCATCGGTCCCATCTTA 66
Query 61 GCGGTGGACGCCGCCGTATCTCACGCAATTCACACGGCGGCGAAGCCATTCCTTCCACCA 120
|||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||
Sbjct 67 GCGGTGGACGCCGCCGTATCTCACGCGATTCACACGGCGGCGAAACCATTCCTCCCACCA 126
Query 121 TTTctcctcctcctcctagaaatctccgccgatttccgattctccttccctgtatccctt 180
||| ||||||||||||| |||||||| || |||||||||||||||||||| |||||||||
Sbjct 127 TTTGTCCTCCTCCTCCTCGAAATCTCAGCTGATTTCCGATTCTCCTTCCCCGTATCCCTT 186
Query 181 tccctcctcctctcccctcccttacgctctttcctcatccctttcctcctcggcctcctc 240
||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 187 TCCTTCCTCCTCTCCCCTCCATTACGCTCTTTCCTCGTCCCTTTCCTCCTCGGCCTCCTC 246
Query 241 ctcGATCTAATCTTAATCGCATTAGTGAAATTAATCTTCCGTCGTGCTCGTCCCGCTTAC 300
||||||||||||| ||| | | || |||||||||||||||||||||||||||||||||
Sbjct 247 TTCGATCTAATCTTCGTCGGAATCGTAAAATTAATCTTCCGTCGTGCTCGTCCCGCTTAC 306
Query 301 AATCACCCTTCAATGTCCGCCGCTGTATCAGCTGATCACTACTCGTTTCCCTCAGGTCAC 360
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 307 AATCACCCTTCAATGTCCGCCGCTGTATCAGCTGATCACTACTCGTTCCCCTCAGGTCAC 366
Query 361 GCGTCTCGCGTCTTCTTCGTTGCCGCTTCCGTTCACTTCTTCTCTGCTGCTGCTGAAGCT 420
|| |||||||| ||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct 367 GCTTCTCGCGTTTTCTTCGTTGCTGCATCTGTTCACTTCTTCTCTGCTGCTGCTGAAGCT 426
Query 421 ACAATGG-TAGATCCGAGTTACTCTTTCTTAGATGGTTGGATCAGAGATAATCACGATGG 479
| ||| | | ||| || ||||| ||||||||||| |||||||||||| || |||||||
Sbjct 427 TCCATGACTGG-TCCAAGCTACTCCTTCTTAGATGGATGGATCAGAGATCATAACGATGG 485
Query 480 CGATGTCAAACCAGAAGTTGTGGTGGCTGTATGGATCTGGGCAACAGTGACTGCATTTTC 539
|||||| || |||||||||||| | |||||||||||||||||||||||||||| ||||
Sbjct 486 CGATGTGAAGGTAGAAGTTGTGGTCGTTGTATGGATCTGGGCAACAGTGACTGCAATTTC 545
Query 540 AAGGATTCTCTTAGGAAGACATTATGTTCTCGATGTAGCTGCTGGTGCTTGCTTT-GGGA 598
||||||||| |||||||||||||| ||||||||||||||||||||||||| ||| ||||
Sbjct 546 AAGGATTCTTTTAGGAAGACATTACGTTCTCGATGTAGCTGCTGGTGCTTT-TTTAGGGA 604
Query 599 TTGTAGAAGCTCTCTTTGCGCTTCGATTTCTGAGATTTGA--AC-T---CTTTGGGAGGT 652
||||||||||||||||||| |||||||||||||||||||| | | |||||||||||
Sbjct 605 TTGTAGAAGCTCTCTTTGCTCTTCGATTTCTGAGATTTGATGAAATGATCTTTGGGAGGT 664
Query 653 AACAAAAGTATCCAAAATGTTGTTGTT-----------G--CTGTAATT---GTTTCGAT 696
|||||| ||||||||| |||||||||| | |||||||| ||||||||
Sbjct 665 AACAAATGTATCCAAATTGTTGTTGTTTTTAACAAATTGTTCTGTAATTTTTGTTTCGAT 724
Query 697 TACATTGAGAAGAAGAATTTTATTGTTCATGAGTCAAAGATTGTTCCTTTTGTTTGACT 755
||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||
Sbjct 725 TACATTGAGAAGAAGAATTGTATTGTTCATGAATCAAAGATTGTTCCTTTTGTTTCACT 783
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36670927310
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5