BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492615
Length=2598
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22540.1 | Symbols: ORP2A | OSBP(oxysterol binding protein)-... 3674 0.0
> AT4G22540.1 | Symbols: ORP2A | OSBP(oxysterol binding protein)-related
protein 2A | chr4:11860444-11866364 REVERSE LENGTH=2782
Length=2782
Score = 3674 bits (1989), Expect = 0.0
Identities = 2328/2485 (94%), Gaps = 49/2485 (2%)
Strand=Plus/Plus
Query 1 CTTACGCAGTCTCACATTTAAGCAAtctctctctctct-ctctctctctttctctGAGAA 59
||||| ||||||||||||||||||| |||||||||||| | ||||||||||||||||||
Sbjct 46 CTTACTCAGTCTCACATTTAAGCAACCTCTCTCTCTCTGAT-TCTCTCTTTCTCTGAGAA 104
Query 60 AAATCTCAGTTCCTCAGAGCTCTCAGGTTCTTTTA---TTCTTCTTCTTCGATTTTATCT 116
||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 105 AAATCTCAGTTTCTCAGAGCTCTCAGGTTCTTTTATTCTTCTTCTTCTTCGATTTCATCC 164
Query 117 CCCAAATCTGCATGCTCTCGATCTAAGACGAATGTTGCTTCGTAGTTTTATGATCTGAGA 176
|||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||
Sbjct 165 CCCAAATCTGCATGCTCTGGATCT--TACGAATGTTGCTTTGTAGTTTTATGATCTGAGA 222
Query 177 -GAGA---T--CAAATCCGTCACCGGAGaaaaaaaTGCGGGTGAAGGAGTTGCATCCACT 230
| | | |||||||||||||||||| ||||||||||| || ||||| ||||||||
Sbjct 223 TCAAATTTTAACAAATCCGTCACCGGAGACGAAAATGCGGGTTAAAGAGTTACATCCACT 282
Query 231 TTGTTGTATTACTTTAGAGAGTCCACACGGGATTAATAATAACCAGTCACCGGAAGAACC 290
||||||||||||||| |||||||| ||||||| | ||||| ||||||||||||||||||
Sbjct 283 TTGTTGTATTACTTTGGAGAGTCCTCACGGGA-T--TAATAGCCAGTCACCGGAAGAACC 339
Query 291 GGTGACGACGGCTTTAACTAGGTCAAGGAGTTTACCGGCGAAGTCGTTAATCGGTGGAGC 350
|||||| ||||||||||||||||||||||||||||||||| | |||| || || |
Sbjct 340 GGTGACAACGGCTTTAACTAGGTCAAGGAGTTTACCGGCG-A------AATC-GTTGA-C 390
Query 351 CAAAGTGGGATCGGAATCGGAGACTGTAGCTGGGATCTTATATAAATGGACTAATTTTGG 410
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 391 C--GGT-GGATCGGAATCGGAGACTGTAGCTGGGATCTTATATAAATGGACTAATTTTGG 447
Query 411 TAAAGGATGGAGATCTAGATGGTTCTTACTCCGTAACGGAATCTTATCTTATTCTAAGAT 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 448 TAAAGGATGGAGATCTAGATGGTTCTTACTCCGTAACGGAATCTTATCTTATTCTAAGAT 507
Query 471 CCGTCGACCGGAGAATTTGAATCTACTTTCTCCGTCA-GATGATGTGAGGTTAATCGGAG 529
||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 508 CCGGAGACCGGAGAATTTGAATCTACTTTCTCCGG-ATGATGATGTGAGGTTAATCGGAG 566
Query 530 ATATTTCCGGTGAACGTCTTTCGAGAATGGATAGTTGTAGTGGTCGCCGGAAACAACAAA 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 567 ATATTTCCGGTGAACGTCTTTCGAGAATGGATAGTTGTAGTGGTCGCCGGAAACAACAAA 626
Query 590 AAACCGTCGGCATTGTTCATCTTAAGGTTTCGTCTTTCAGAGAAAGCAAGTCGGATGATA 649
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 627 AAACCGTCGGCATTGTTCATCTTAAGGTTTCTTCTTTCAGAGAAAGCAAGTCTGATGATA 686
Query 650 GAAAGTTCTATATATTCACAGCAACCAAGACCCTTCATTTGAGGACTGATTCTATAAGTG 709
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 687 GAAAGTTCTATATATTCACAGCAACAAAGACCCTTCATTTGAGGACTGATTCTATAACTG 746
Query 710 ATAGAGCGGCTTGGTTACAAGCATTAGCATCTACAAAATGCATCTTTCCTCTCCGGTCGC 769
||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||| |
Sbjct 747 ATAGAGCAGCTTGGTTACAAGCATTAGCATCTACAAAATGTATCTTTCCTCTGCGGTCAC 806
Query 770 TTAATGGGGATTTCTCCTTTATACCACCAAAGGATTTGTCCATATCAACTGAGAGGCTAA 829
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 807 TTAATGGGGATTTCTCCTTCATACCACCAAAGGATTTGTCCATATCAACTGAGAGACTAA 866
Query 830 AGAAACGGTTGCACGAAGAGGGAATGAATGAGAATCTTGTAAAAGAGTGCGAACAGATCA 889
|||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||
Sbjct 867 AGAAACGGTTGCACGAAGAGGGTATGAATGAGAATCTCGTCAAAGAGTGCGAACAGATCA 926
Query 890 TGCTCTCAGAATTTTCTGAAATGCACGGACAAGTTAAGCTTTTACACGAAGAACGGACGA 949
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 927 TGCTCTCAGAATTTTCTGAAATGCACGGACAAGTTAAACTTTTACACGAAGAACGGACTA 986
Query 950 ATTTGCTTGACGCATTGAGGCAGCTAGAGGCAGCTAATCTCGAAGTTGGCGCATCAGGGA 1009
|||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 987 ATTTGCTTGATGCATTGAGGCAGCTTGAGGCAGCTAATCTCGAAGTTGGTGCATCAGGGA 1046
Query 1010 AGCATGAGTTTTCAAGCCTAGGACGTGGAAAGTATAGTGAATGCAGCACAACTGCTTCAT 1069
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1047 AGCATGAGTTTTCAAGCCTAGGACGTGGAAAGTATAGTGAATGCAGCACAACTGCTTCAT 1106
Query 1070 CTGATGATAAACAAGAGTTTGAGGATGTGTCTGAGGAAGATGAACCTTCCTTCCATGACA 1129
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1107 CTGATGGTAAACAAGAGTTTGAGGATGTGTCTGAGGAAGATGAACCTTCCTTCCACGACA 1166
Query 1130 CAAAGGAGTTCTTTCATGAACCTAATGTTGGTTCTGAATCAAATCTAGCTATTTCTGGAC 1189
|||||||||||||| | |||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1167 CAAAGGAGTTCTTTAACGAACCTAACATTGGTTCTGAATCAAATTTAGCTATTTCTGGAC 1226
Query 1190 ACGCGGATATCAAGAGAAGAACGAAACTTCCTGATCCAGCTGAAAAAGAGAAAGGTGTCA 1249
|| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1227 ACACGGATATCAAGAGAAGAACAAAACTTCCTGATCCAGCTGAAAAAGAGAAAGGTGTTA 1286
Query 1250 GTCTTTGGTCTATGATCAAAGACAACGTTGGAAAGGATCTCACCAGAGTTTGCCTCCCTG 1309
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1287 GTCTTTGGTCTATGATCAAAGACAACGTTGGAAAGGATCTCACCCGAGTTTGCCTCCCTG 1346
Query 1310 TGTATTTCAATGAACCAATATCATCCCTCCAAAAGTGCTTTGAAGACTTGGAGTACTCGT 1369
|||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||
Sbjct 1347 TGTATTTCAATGAACCAATATCATCCCTCCAAAAATGTTTTGAAGACTTGGAGTATTCGT 1406
Query 1370 ATCTTCTGGACCGAGCATATGAACATGGAAAATCTGGGAATGGTCTCTTAAGAGCCTTAA 1429
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 ATCTTTTGGACCGAGCATATGAACATGGAAAATCTGGGAATGGTCTCTTAAGAGCCTTAA 1466
Query 1430 ATGTTGCTGCTTTTGCCGTCTCTGGATACGCTTCCACTGAAGGCAGGCACTGTAAGCCCT 1489
|||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1467 ATGTTGCTGCTTTTGCGGTCTCTGGATATGCTTCCACTGAAGGCAGGCATTGTAAGCCCT 1526
Query 1490 TCAATCCTTTGCTTGGAGAAACCTATGAAGCCGACTTTCCTGAAAAGGGGAT---T--C- 1543
||||||||||||||||||||||||||||||||||||||||||||||||| || | |
Sbjct 1527 TCAATCCTTTGCTTGGAGAAACCTATGAAGCCGACTTTCCTGAAAAGGGAATCCGTTTCT 1586
Query 1544 -----G------TCAGTCACCATCCAACTGTTATCCGCCCTGCCACTGTGAAGGGAAAGG 1592
| ||||||||||||||||||||||| ||| |||||||||||||| |||||
Sbjct 1587 TCTCTGAGAAGGTCAGTCACCATCCAACTGTTATC-GCC-TGCCACTGTGAAGGTAAAGG 1644
Query 1593 GTGGAAGTTCTGGGGTGACACTAACCTCAGGTCAAAGTTTTGGGGGAGGTCGATTCAAGT 1652
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1645 GTGGAAGTTTTGGGGTGACACTAACCTCAGGTCAAAGTTTTGGGGGAGGTCGATTCAAGT 1704
Query 1653 CGAACCTGTCGGAGTTTTGACTCTAGAGTTTGATGATGGCGAAGTGTTTCAATGGAGCAA 1712
||||||||| |||||||||||||| ||||| |||||||| ||||| ||||| ||||||||
Sbjct 1705 CGAACCTGTTGGAGTTTTGACTCTGGAGTTCGATGATGGAGAAGTATTTCAGTGGAGCAA 1764
Query 1713 GGTAACATCAACTATATACAATATCATACTAGGTAAACTCTACTGTGATCATCATGGTGT 1772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1765 GGTAACATCAACTATATACAATATCATACTAGGTAAACTCTACTGTGATCATCATGGTGT 1824
Query 1773 GATGCAAATCCGTGGGAACCGCCAATATTCTTGTACGCTCAAGTTTAAGGAGCAATCCAT 1832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1825 GATGCAAATCCGTGGGAACCGCCAATATTCTTGTACGCTCAAGTTTAAGGAGCAATCCAT 1884
Query 1833 TCTTGAGAGAAACCCCCACCAAGTAAACGGTTTTGTAGAAGACGTAGCTGGGCAAAAAGT 1892
|||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1885 TCTTGAGAGAAATCCCCACCAGGTAAACGGTTTTGTAGAAGACGTAGCAGGGCAAAAAGC 1944
Query 1893 GGCAACAATATTTGGTAAATGGGATGATAGTCTTTACTATGTTGCCGGTGATGGAATCAG 1952
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1945 AGCAACAATATTTGGTAAATGGGATGATAGCCTTTACTATGTTGCTGGTGATGGAATCAA 2004
Query 1953 CAAGTCGAAAGTCAGTGATCCCGCATCAAATGCGTCGTTACTGTGGAAAAGGACCAGGCC 2012
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||
Sbjct 2005 CAAGTCGAAAGTCAGTGATCCTGCATCAAATGCCTCGTTACTGTGGAAAAGGACCAAGCC 2064
Query 2013 ACCGCCTAATGTCACTAGATACAACTTAACCTCATTTGCCATTACCCTAAACGAGTTAAC 2072
|||||||||||| |||||||||||||||||||||||||||||||| || |||||| ||||
Sbjct 2065 ACCGCCTAATGTAACTAGATACAACTTAACCTCATTTGCCATTACTCTGAACGAGCTAAC 2124
Query 2073 ACCTGGTTTACAGGAGATACTTCCTCCTACAGATTCTAGGCTCAGACCAGATCAACGGCA 2132
|||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 2125 ACCTGGGTTACAGGAGATACTTCCTCCCACAGACTCTAGGCTCAGACCAGATCAACGGCA 2184
Query 2133 TCTTGAGAATGGTGAATATGAGAAGGCGAACTTAGAAAAACAACGGTTAGAAAGAAGGCA 2192
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2185 TCTTGAGAATGGTGAATATGAGAAGGCGAACTTAGAGAAACAACGGTTAGAAAGAAGGCA 2244
Query 2193 AAGAATGTCGCGGCAACTTCAGGAAAGCGGATGGAGACCGAGATGGTTTGAGAGACAAGG 2252
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 2245 AAGAATGTCGCGGCAACTTCAAGAAAGCGGTTGGAGACCGAGATGGTTTGAGAGACAAGG 2304
Query 2253 TGAAAGCGAAACATTCAAGTACACGGGTGGTTACTGGGAAGCACGAGGGCACAGAAACTG 2312
||||||||| || |||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct 2305 TGAAAGCGACACCTTCAAGTACACGGGTGGTTATTGGGAAGCACGAGGGCATAGGAACTG 2364
Query 2313 GGATGATTGCCCCGACATATTCGGGGAGTTCACAGAAGAGCTAGCGGATTCCGCTTAGAA 2372
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 2365 GGATGATTGCCCCGACATCTTCGGGGAGTTCACAGAAGAGCTAGCGGACGCCGCTTAGAA 2424
Query 2373 AGCTTCTTGATTTCATTCCAGAAGATCTCCATCCGGACCACAATGGAGTTGTTTACACGG 2432
|||||||||| ||||||||||||||||| ||| ||||||| | |||||||||||||||||
Sbjct 2425 AGCTTCTTGACTTCATTCCAGAAGATCTTCATTCGGACCATATTGGAGTTGTTTACACGG 2484
Query 2433 AAGCACACGTCTTTGGACCATGGTT 2457
||||| | ||||| ||||||||||
Sbjct 2485 CAGCACCCATCTTTCGACCATGGTT 2509
Score = 200 bits (108), Expect = 5e-50
Identities = 135/147 (92%), Gaps = 5/147 (3%)
Strand=Plus/Plus
Query 2456 TTGTGTCTTAGAGAGTCACTGTAAAGTCTTATCTCCTTCTCTTCAATTCTCTATCTCCCT 2515
||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2590 TTGAGTCTTAGAGTGTCACTGTAAAGTCTTATATCCTTCTCTTCAATTCTCTATCTCCCT 2649
Query 2516 CGTTAAATAGTTGAGATTAA--T-GTAGGTTGGTCTTACATTTGGACGAGTTCATTGTAA 2572
||| |||||||||||||||| | |||||||||||||||| |||||| ||||| ||||||
Sbjct 2650 CGTCAAATAGTTGAGATTAATGTAGTAGGTTGGTCTTACA-TTGGACAAGTTCCTTGTAA 2708
Query 2573 TCCATTTGTATTTAATTaa-aaaaaaa 2598
|||||||||||||||||| |||||||
Sbjct 2709 TCCATTTGTATTTAATTATTAAAAAAA 2735
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 128979210453
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5