BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492618
Length=1046
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22530.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 845 0.0
> AT4G22530.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr4:11859004-11860208
REVERSE LENGTH=1108
Length=1108
Score = 845 bits (457), Expect = 0.0
Identities = 581/639 (91%), Gaps = 16/639 (3%)
Strand=Plus/Plus
Query 1 CCTCAATTATTAAAGATCACCAAAATTCGAAACAAAATTTAAATC-G-AA---GAAGCAA 55
|||| |||||||||| |||||| |||||||||| ||||| ||| | || ||| | |
Sbjct 5 CCTCTATTATTAAAGCTCACCAGAATTCGAAAC-CAATTT-GATCAGAAATTTGAATCGA 62
Query 56 ATCA-CAAATATaaaaaaaTGTCAGGAGTTTACGACAATCAAGCTGATATCTACTTAGAC 114
| | ||||| | ||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 63 AGAAGCAAAT-CACAAAAATGTCAGGAGTTTACGATAGTCAAGCTGATATCTACTTAGAC 121
Query 115 GCACGTCCTACTTATCCCGCCGATTGGTACTCCAAGCTCGCCGCTCTCTCCCACCGTCAC 174
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 GCACGACCTACTTATCCCGCCGATTGGTACTCCAAGCTCGCCGCTCTCTCCCACCGTCAC 181
Query 175 AATCTCGCTTGGGATGCCGGAACCGGAAACGGCCAAGCCGCCATCGGCATCGCGGAACAC 234
|||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 182 AATCTCGCTTGGGACGCCGGAACCGGAAACGGCCAAGCTGCCATCGGAATCGCGGAACAC 241
Query 235 TACGAAAGAGTCGTCGCGACGGATGTGAGCGAGACGATGTTGAATCTCGGAAAACCGCAT 294
|||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||
Sbjct 242 TACGAAAGAGTCGTTGCGACGGACGTTAGCGAGACGATGTTGAATCTCGGAAAACCGCAT 301
Query 295 CCGAAGGTAACGTACCACCACACGCCGC-CGTCGATGACGGAAGACGAGATGGT-GAATC 352
||||| |||||||||||||||||||| | |||||||||||||||| || ||||| || ||
Sbjct 302 CCGAAAGTAACGTACCACCACACGCC-CTCGTCGATGACGGAAGATGAAATGGTAGA-TC 359
Query 353 TGATCGGAGGAGGAGAGAACTCTGTCGATCTGATAACTGTAGCCACTGCTGTACACTGGT 412
| || ||||||| ||| | |||||| ||| ||||||| || || || || ||||||||||
Sbjct 360 TTATTGGAGGAG-AGA-A-CTCTGTGGATTTGATAACGGTGGCTACCGCCGTACACTGGT 416
Query 413 TCGATCTCCCGAGATTCTACGCGATTGCAAATCGTCTTCTCCGTAAACCAGGAGGAATCA 472
||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||
Sbjct 417 TCGATCTCCCGAGATTCTACGCGATCGCGAATCGTCTCCTCCGTAAACCAGGAGGAATCA 476
Query 473 TCGCCGTGTGGAGCTACAACACTGACATGGTGGTGAGTCCCGAGTTCGACTCGGTGATGA 532
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 477 TCGCCGTGTGGAGCTACAACACTGACATGGTGGTGAATCCCGAGTTCGACTCGGTGATGA 536
Query 533 CTCGGTTTAGCGCTGAAACGATGCCGTATTGTAAATTCCCAGAGAGTCAGTATTTTTTGG 592
||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 537 CTCGGTTCATCGCTGAAACGTTGCCGTATTGTAAATTCCCAGAGAGTCAGTATTTTTTGG 596
Query 593 ACGGATATAAAACGTTACCGTTTCCGTTTGAGAGTGTGG 631
|||||||||| ||||| ||||||||||||||||| ||||
Sbjct 597 ACGGATATAAGACGTTGCCGTTTCCGTTTGAGAGCGTGG 635
Score = 431 bits (233), Expect = 7e-120
Identities = 339/387 (88%), Gaps = 20/387 (5%)
Strand=Plus/Plus
Query 631 GATGATG-AAACAGTGTCGTTTGAAGGATTCTTGCGGATGTTGAGATCATGGTCTGCCGT 689
||||| | |||| ||||||||||||||||||||||||||| | ||||| |||||||||||
Sbjct 670 GATGAAGAAAACGGTGTCGTTTGAAGGATTCTTGCGGATGCTAAGATCGTGGTCTGCCGT 729
Query 690 TGGTGCTGCTAAGGAGAAAGGAGTAGACTTGTTGTCCGATAATGTAGTCAAAGAGCTTGA 749
|||||||||||| || |||||||||||||| ||||| || ||||||||||||||||| ||
Sbjct 730 TGGTGCTGCTAAAGAAAAAGGAGTAGACTTATTGTCGGACAATGTAGTCAAAGAGCTCGA 789
Query 750 GACGGCTTGGGGTGGTTATGATCTGGTTCGAACCATTGTTTACAAGACGTTTATGCTCGC 809
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 790 GACGGCTTGGGGTGGTTATGAGCTGGTTCGAACCATTGTTTACAAGACGTTTATGCTCGC 849
Query 810 AGGAACCGTTCGTTAGAAACTAGCTTCTTCTTAAATTGGTAACCAACTA-GT-TGAAACT 867
||||||||||| ||||||||||||||||| |||| |||||| ||| || |||||||
Sbjct 850 AGGAACCGTTCCTTAGAAACTAGCTTCTTTTTAATTTGGTATGG--CTAAGTCTGAAACT 907
Query 868 TGATATCTTAATGGTATTTGAAACCTCATGaaataacaaaaata---taaacataaaaaa 924
||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 908 TGATATCTTAAGGGTATTTGAAACCTCATGAAATAACAAAAACAGGATAAACATAAAAA- 966
Query 925 acgataaaaaaaaTTTTACCTTATCATAGAACATCAAAACGAAACATGTGAAAACACTAC 984
| | | ||||||||| |||| ||||||||||||||| ||||||||||| |
Sbjct 967 --GTTTA------TTTTACCTTTTCATCGAACATCAAAACGAA-CATGTGAAAACGTTT- 1016
Query 985 G-AATGTTTTCACTTTATTTCAACAAA 1010
| ||||||||| |||||||||||||||
Sbjct 1017 GTAATGTTTTCGCTTTATTTCAACAAA 1043
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51289064087
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5