BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492622
Length=634
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22490.1 | Symbols: | Bifunctional inhibitor/lipid-transfer... 878 0.0
> AT4G22490.1 | Symbols: | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein | chr4:11849701-11850331
REVERSE LENGTH=631
Length=631
Score = 878 bits (475), Expect = 0.0
Identities = 588/640 (92%), Gaps = 18/640 (3%)
Strand=Plus/Plus
Query 1 CACACTTTCATATTCAC--aa-aaaa-aaaaaaaTGGCCTCAAAGAGCTCAACCACCATT 56
||||||||||||| ||| || |||| |||||||||||||||||||||||||||||||||
Sbjct 4 CACACTTTCATATCCACAAAATAAAATAAAAAAATGGCCTCAAAGAGCTCAACCACCATT 63
Query 57 TCCCTCATCATCATCCTCCTCATCAGCCTTGCAGAAGCAGACCTCTTAAGCTCGCCTTCA 116
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||
Sbjct 64 TCCCTCATCATCATCCTCCTCATCAGCCTCGCAGAAGCAAACCTCTTAAGCTCGCCTACA 123
Query 117 CCGACCAACAACTTTGGCTCGTGCCCCAGAAACCCATTGCAACTAGGCGTATGTGCCAAC 176
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 124 CCGACCAACAACTTTGGCTCATGTCCCAGAAACCCATTGCAACTAGGCGTATGTGCCAAC 183
Query 177 GTCCTTGGCCTAGCCAATGTTACAGCTGGAGACCCCAGAGCACGACAGTGTTGCACTGCC 236
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 184 GTCCTTGGCCTAGCCAATGTTACAGCTGGCGACCCCAGAGCACGACAGTGTTGCACTGCC 243
Query 237 ATCAATGGCCTCACTAACGTTCAAGTAGCCGATTGTCTCTGCTTTATCTTCAGGCC-ACT 295
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||| | |
Sbjct 244 CTCAATGGCCTCACTAATGTTCAAGTAACCGATTGTCTCTGCTTTATCTTCAGGCCGA-T 302
Query 296 TCCTTTGGTTTTTGCAATCGATGAAGCTGTTAGAGAAATCTTTTTTGCTTGCAATAGGGT 355
||| |||||||| | || |||| || ||||||||||||||||||||||||||||||||
Sbjct 303 TCCGTTGGTTTTCGGTATTGATGTGGCCGTTAGAGAAATCTTTTTTGCTTGCAATAGGGT 362
Query 356 TTTTCCAATCGGTTTCCAGTGTCCACCACCAACAGTAACCACCCCTTAATTCCCCTAATT 415
|||||| |||||||||||||||||||||||| ||||||| || |||||||||||||| |
Sbjct 363 TTTTCCTATCGGTTTCCAGTGTCCACCACCA-CAGTAACTACTACTTAATTCCCCTAAAT 421
Query 416 AAGAGCCCTATCCGGTGTTTACTTGCACTATAAGTTTGCTGGCACCACAAGTATGGGTT- 474
|||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||
Sbjct 422 AAGAGCCCTATCCGGTGTTTCCTTGCACTATAAGTTTGCTGGTACCAAAAGTATGGGTTT 481
Query 475 ATCTATTAATGTTTTACAGTGTTGGTGTGTGTTTCGTTGTTGATTAGGACGTAATTATAA 534
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 482 ATCTATTAATGTTTTACAGTGTTGGTGTGTGTTTCGTTGTTGATTAGAACGTAATTATAA 541
Query 535 GGACTCTCGATGTTTTATTAAAAAGGACTGTATGTTGTTATGCATATCTATTAATGTCTA 594
||||| |||||| || | ||||||| | | ||| | |||||||||||||||||||
Sbjct 542 GGACTATCGATGCTT-ACTAAAAAG---T-T--GTTA--A-GCATATCTATTAATGTCTA 591
Query 595 TGAAGAATCATAATAAATAAAGTATAACACCTTGTGTCTC 634
|||||||| ||| ||||||||||||||||| |||||||||
Sbjct 592 TGAAGAATAATATTAAATAAAGTATAACACTTTGTGTCTC 631
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30592595523
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5