BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492625
Length=558
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22380.1 | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd... 787 0.0
AT4G12600.2 | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd... 302 3e-81
AT5G20160.2 | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd... 159 2e-38
> AT4G22380.1 | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein | chr4:11811750-11813000 REVERSE LENGTH=756
Length=756
Score = 787 bits (426), Expect = 0.0
Identities = 516/560 (92%), Gaps = 4/560 (1%)
Strand=Plus/Plus
Query 1 AAGGACCGATTTCTTAACATTGTCAAATCTTTTAAAAACCCTAATTTGATTCTCTGAGCT 60
|||||| ||||| | |||||| ||||||| || |||||||||||||| |||| ||||||
Sbjct 2 AAGGACAGATTTGTAAACATTCTCAAATCCTTCAAAAACCCTAATTTCTTTCTGTGAGCT 61
Query 61 TATTGAGAACGAAGAAGATGGCGGGAGAGGCAGTGAACCCTAAAGCGTATCCGTTAGCAG 120
|||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||
Sbjct 62 TATTGAGAACGAAGAAGATGACGGGAGAGGTAGTGAACCCTAAGGCGTATCCGTTAGCAG 121
Query 121 ATTCTCA-CTTATCGATAACAATACTGGACCTCGTTCAACAAGCTACTAACTACAAGCAG 179
||||||| ||| |||||||||||| |||| || |||||||||||||||||||||||||||
Sbjct 122 ATTCTCAGCTT-TCGATAACAATAATGGATCTTGTTCAACAAGCTACTAACTACAAGCAG 180
Query 180 CTTAAGAAGGGAGCTAATGAAGCTACCAAGACATTGAACCGTGGGATCTCTGAGTTCGTT 239
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 181 CTTAAGAAGGGAGCTAATGAAGCTACCAAAACATTGAACCGTGGAATCTCTGAGTTCGTT 240
Query 240 GTTATGGCTGCTGATGCTGAGCCTCTTGAGATTCTTCTTCATCTTCCTTTACTTGCCGAA 299
|||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||
Sbjct 241 GTTATGGCTGCTGATGCTGAACCACTTGAGATTCTTCTTCATCTTCCTTTGCTTGCCGAA 300
Query 300 GATAAGAATGTGCCGTATGTGTTTGTACCTTCGAAGCAAGCATTGGGAAGAGCATGCGGA 359
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 301 GATAAGAATGTGCCATATGTGTTTGTACCTTCGAAACAAGCATTGGGAAGAGCATGTGGA 360
Query 360 GTAACGAGACCTGTTATCGCTTGTTCAGTGACATCGAACGAGGCAAGCCAGTTGAAGTCA 419
||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||| ||
Sbjct 361 GTAACAAGACCTGTTATTGCTTGTTCAGTGACATCGAATGAGGCAAGCCAGTTGAAATCG 420
Query 420 CAGATTCAGCACCTGAAGGATGCGATAGAGAAGCTCCTGATCTAAGGAATTT-TGTTCGG 478
||||||||||| || |||||||| || ||||||||||||||||||||| ||| || || |
Sbjct 421 CAGATTCAGCATCTCAAGGATGCAATTGAGAAGCTCCTGATCTAAGGA-TTTCTGCTCAG 479
Query 479 TATGAAGAGTCTCTGCAATGTGGAGTGGCTCTGACTGAAGTTAGTTTGTGCAATTTACGT 538
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
Sbjct 480 TATGAAGAGTCTCTGCAATGTGGAATGGCTCTGACTGAAGTTAGTTTGTGTGATTTACCT 539
Query 539 ATTTGGAGATTGTATTGTGA 558
||||| ||| ||||||||||
Sbjct 540 ATTTGAAGAATGTATTGTGA 559
> AT4G12600.2 | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein | chr4:7453201-7454515 FORWARD LENGTH=954
Length=954
Score = 302 bits (163), Expect = 3e-81
Identities = 217/242 (90%), Gaps = 7/242 (3%)
Strand=Plus/Plus
Query 67 GAACGAAGAAGATGGCGGGAG-AGGCAGTGAACCCTAAAGCGTATCCGTTAGCAGATTCT 125
||| |||||||||| ||| || ||| |||||||||||| |||||||||||||| ||||||
Sbjct 86 GAA-GAAGAAGATGACGGTAGAAGG-AGTGAACCCTAAGGCGTATCCGTTAGCTGATTCT 143
Query 126 CACTTATCGATAACAATACTGGACCTCGTTCAACAAGCTACTAACTACAAGCAGCTT-AA 184
|| ||||||||||| || || || || |||||||||||||| || ||||| ||| || ||
Sbjct 144 CAGTTATCGATAACGATTCTTGATCTTGTTCAACAAGCTACGAATTACAAACAG-TTAAA 202
Query 185 GAAGGGAGCTAATGAAGCTACCAAGACATTGAACCGTGGGATCTCTGAGTTCGTTGTTAT 244
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 203 GAAAGGAGCTAATGAAGCTACCAAGACATTGAACCGTGGGATCTCTGAGTTCATTGTTAT 262
Query 245 GGCTGCTGATGCTGAGCCTCTTGAGATTCTTCTTCATCTTCCT-TTACTTGCCGAAGATA 303
|||||||||| |||||||||| ||||||||||||||||||||| || ||||| |||||||
Sbjct 263 GGCTGCTGATACTGAGCCTCTCGAGATTCTTCTTCATCTTCCTCTT-CTTGCTGAAGATA 321
Query 304 AG 305
||
Sbjct 322 AG 323
> AT5G20160.2 | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein | chr5:6803782-6805195 REVERSE LENGTH=869
Length=869
Score = 159 bits (86), Expect = 2e-38
Identities = 116/130 (89%), Gaps = 4/130 (3%)
Strand=Plus/Plus
Query 74 GAAGATGGCGGGAG-AGGCAGTGAACCCTAAAGCGTATCCG-TTAGCAGATTCTCACTTA 131
||| ||| | |||| || | || |||||||||||||||||| || ||||||||||| |||
Sbjct 90 GAAAATGACCGGAGAAGTC-GTCAACCCTAAAGCGTATCCGCTT-GCAGATTCTCAGTTA 147
Query 132 TCGATAACAATACTGGACCTCGTTCAACAAGCTACTAACTACAAGCAGCTTAAGAAGGGA 191
||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 148 TCGATAACAATTCTTGACCTCGTTCAACAAGCTACTAACTACAAGCAGCTCAAGAAGGGT 207
Query 192 GCTAATGAAG 201
||||||||||
Sbjct 208 GCTAATGAAG 217
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26774800351
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5