BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492627
Length=1602
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22360.1 | Symbols: | SWIB complex BAF60b domain-containing... 1362 0.0
AT4G22370.1 | Symbols: | unknown protein; Has 12 Blast hits to... 180 4e-44
> AT4G22360.1 | Symbols: | SWIB complex BAF60b domain-containing
protein | chr4:11807660-11810117 FORWARD LENGTH=1674
Length=1674
Score = 1362 bits (737), Expect = 0.0
Identities = 832/875 (95%), Gaps = 17/875 (2%)
Strand=Plus/Plus
Query 728 ATTGTGAGGCAACTGTGGGCTTATATAAGGAAGAATAACCTTCAAGATCCGAGTAACAAG 787
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 812 ATTGTGAGGCAATTGTGGGCTTATATAAGGAAGAATAACCTTCAAGACCCGAGTAACAAG 871
Query 788 CGGAAGATCATCTGTGATGATGCGTTGCGTGTGGTTTTTGAGACTGATTGCACTGACATG 847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 872 CGGAAGATCATCTGTGATGATGCGTTGCGTGTGGTTTTTGAGACTGATTGCACTGACATG 931
Query 848 TTCAAGATGAATAAGTTGCTTGCTAAGCATATTCTCCCGCTTGATCCATCAAAGGACTCT 907
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 932 TTCAAGATGAATAAGTTGCTTGCTAAGCATATTCTCCCGCTTGATCCATCAAAGGACTCT 991
Query 908 GGTCAAGCAAAAAAGGCAAAAGCTGAGGTGGAGACTAAGACTGAGACCACAGAGCCTGTT 967
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 992 GGTCAAGCAAAAAAGGCAAAAACTGAGGTGGAGACTAAGACTGAGACCACCGAGCC---- 1047
Query 968 AATTCAACTGCTGTTAGTTCAACTGCTGTTAGTTCAACTGTTGCATTATCTGAGCCACTT 1027
| | |||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1048 ---T--A------TTAGTTCAACTGCTATTAGTTCAACTGTTACATTATCTGAGCCACTT 1096
Query 1028 GCTAAGTTCTTTGGCACTGGTGAGGCGGAGATGACAGACAAAGAGATCATTCGTCGTGTT 1087
| |||||||||||||||||||||| |||||||| ||||| ||||||| ||||| ||||||
Sbjct 1097 GGTAAGTTCTTTGGCACTGGTGAGACGGAGATGGCAGACGAAGAGATTATTCGCCGTGTT 1156
Query 1088 TGGGAATACATTAAACTCAACAATTTAGAGGACCCTGTAAATCCAATGGCTATTCAGTGT 1147
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1157 TGGGAATACATAAAACTCAACAATTTAGAGGACCCAGTAAATCCAATGGCTATTCAGTGT 1216
Query 1148 GATGAAAAGCTCCGCGATCTTCTTGGATGTGAAAGCATTTCAGCTGTGGGGATAAATGAG 1207
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1217 GATGAAAAGCTCCGAGATCTTCTTGGATGTGAAAGCATTTCAGCTGTGGGGATAAATGAG 1276
Query 1208 ATGCTGATGCGCCATATGTACAAGCAGTCGTGATATCTTCTGGTCTGACTAAATTAACTA 1267
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1277 ATGCTGAGGCGCCATATGTACAAGCAGTCGTGATATCTTCTGGTCTGACTTAATTAACTA 1336
Query 1268 GGAACTACTAGTGTGTGTATCTAGGGAACCTACTTATGACTCCTTGGTGTAGAACTCTGA 1327
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1337 GGAACTACTAGTGTGTGTATCTAGGGAACCTACTTATGACTCCTTGCTGTAGAACTCTGA 1396
Query 1328 TAGGGAAGAAAAGAACCTTTTCACTTTTAACTTCCGTTAATGCTATTTTAATCTTCCGTT 1387
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1397 TAGGGAAGAAAAGATCCTTTTCACTTTTAACTTCCTTTAATGCTATTTTAATCTTCCGTT 1456
Query 1388 GGGTTCTTTGTTTTAGTTGGTTGTGTATCGACATGGTTAGGTTGATGTTGTATTTAGTAT 1447
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1457 GGGTTCTTTGTTTTAGTTGGTTGTGTATCGACATGCTTAGGTTGATGTTGTATTTAGTAT 1516
Query 1448 TGTACTGAAACTCTAGTGTTAAGGGTGAAATGGCGCATATGTTTTGTATTTAACGCCATT 1507
||||| |||||||||||||||||||||||| |||||| |||||||||||| |||||||||
Sbjct 1517 TGTACCGAAACTCTAGTGTTAAGGGTGAAACGGCGCAGATGTTTTGTATTAAACGCCATT 1576
Query 1508 CACCCATGAATGTCTTAGGaaaaaaaaaaaCTCATGTGTTTAACTATGTTTTCCCTGTTG 1567
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1577 CACCCATGAATGTCTTAGGAAAAAAAAA--CTCATGTGTTTAACTATGTTTTCCCTGTTG 1634
Query 1568 GAAAAATTTGCATCCTACTGATAGAAAAATCTTAT 1602
|||| ||||||||||||||||||||||||||||||
Sbjct 1635 GAAATATTTGCATCCTACTGATAGAAAAATCTTAT 1669
Score = 929 bits (503), Expect = 0.0
Identities = 704/789 (89%), Gaps = 62/789 (8%)
Strand=Plus/Plus
Query 1 aagaagataagagagagaaagagatagagaga-At-ttg---tttttt-tttttc--ttg 52
|||| ||||||||||||||||| ||||||| | | ||| |||||| |||||| |||
Sbjct 8 AAGAGGATAAGAGAGAGAAAGATATAGAGA-ATTTGTTGTCTTTTTTTCTTTTTCTTTTG 66
Query 53 tggggtatttgttttttttttt-tcctt--aaagattttttttttG-GTGTATG----AA 104
|||||||||||||||||||||| ||||| |||| ||||||||||| ||||||| ||
Sbjct 67 TGGGGTATTTGTTTTTTTTTTTCTCCTTAAAAAGTTTTTTTTTTTGTGTGTATGAAAAAA 126
Query 105 AAAGCTTTGAAA-T-TCTCTCGACAATGGTGTCGGACCAGGATCTAGCGAAAGGAGTCGA 162
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 AAAGCTTTGAAATTCTCTCTCGACAATGGTGTCGGACCAGGATCTAGCGAAAGGAGTCGA 186
Query 163 GACTTTGCTTCGGCAATCTGACCCTAGCTCTCTCACATCGTTAACCAGTGTTGTTCAACA 222
|||||||||||| ||||| ||||||||||||||||||||||||| |||| ||||||| ||
Sbjct 187 GACTTTGCTTCGACAATCCGACCCTAGCTCTCTCACATCGTTAAGCAGTATTGTTCAGCA 246
Query 223 GCTTGAAGCTAAGTTAGGGTTAGACCTTACGGAGAAGACGACTTTCATCAGAGATCAGAT 282
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 247 GCTTGAAGCTAAGTTAGGGTTAGACCTCACGGAGAAGACGACTTTCATCAGAGATCAGAT 306
Query 283 CAATATCCTCCTCCGTGCTCACCAAAACCCTTCAGCCTCCGTCGCCTCCGCTTCATCCGT 342
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 307 CAATATCCTCCTCCGTGCTCACCAAAACCCTTCTGCCTCCGTCGCCTCCGCTTCATCCGT 366
Query 343 ACAACAATCTCA---TCCTCCGCCGCCGTCTTCT------CAGCAGAATTTGCATTCCGG 393
|||||||||||| |||||| |||||||||||| ||||||||||||||||||||
Sbjct 367 ACAACAATCTCACCCTCCTCCTCCGCCGTCTTCTCACCAGCAGCAGAATTTGCATTCCGG 426
Query 394 CGTCAATG-T--TCCGGTGGCGAAAGGGCATTTCACACTTAGCCATCCGTCGCAATTCTC 450
|||||||| | |||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 427 CGTCAATGTTCCTCCGATGGCGAAAGGGCATTTCACACTTAGCCATCCTTCGCAATTCTC 486
Query 451 TG--T-TTCTCAATCACAACAATATCCTCCACATTTCGCTCTTCAGCCTCCTTATCACTC 507
|| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 487 TGTTTCTTCTCAATCACAACAATATCCTTCACATTTCGCTCTTCAGCCTCCTTATCACTC 546
Query 508 TTATGACCTAAATTTCCGGCAGCCTTATCCGGTTTACATGCCGCCGCAACAGCATCAGCA 567
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 547 TTATGACCTAAATTTCCGGCAGCCTTATCCGGTTTACATGCCGCCGCAACAGCA-C--CA 603
Query 568 CCAGCACCAGCAGCAGTCTCCGCGGCAACAA---TCCTCTGTGATGCTTTCACAAGGCG- 623
||| ||||||||||||||||| |||||| |||||||||||||| ||||| ||||
Sbjct 604 ---GCATCAGCAGCAGTCTCCGCGACAACAACAATCCTCTGTGATGCTCTCACATGGCGG 660
Query 624 -----CT-----A------A-TCAGGCCCCAAAAGAAAGTGCTCCGGCTGGAACTAAAAG 666
|| | | ||| |||||||||||||||||||||||||||||||||||
Sbjct 661 GAATGCTTCTCTATCTGTTAATCAAGCCCCAAAAGAAAGTGCTCCGGCTGGAACTAAAAG 720
Query 667 AAAGGGTGGTCCTGGAGGACTAAACAAAGTCTGTAGGGTTTCTCCAGAACTTCAAGTCGT 726
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 721 AAAGGGTGGTCCTGGAGGACTAAACAAAGTCTGTAGGGTTTCTCCAGAACTTGAAGTAGT 780
Query 727 TATTG-TGA 734
| ||| |||
Sbjct 781 TGTTGGTGA 789
> AT4G22370.1 | Symbols: | unknown protein; Has 12 Blast hits
to 12 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr4:11810005-11811214 REVERSE
LENGTH=715
Length=715
Score = 180 bits (97), Expect = 4e-44
Identities = 106/110 (96%), Gaps = 2/110 (2%)
Strand=Plus/Minus
Query 1493 GTATTTAACGCCATTCACCCATGAATGTCTTAGGaaaaaaaaaaaCTCATGTGTTTAACT 1552
||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 715 GTATTAAACGCCATTCACCCATGAATGTCTTAGG--AAAAAAAAACTCATGTGTTTAACT 658
Query 1553 ATGTTTTCCCTGTTGGAAAAATTTGCATCCTACTGATAGAAAAATCTTAT 1602
||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 657 ATGTTTTCCCTGTTGGAAATATTTGCATCCTACTGATAGAAAAATCTTAT 608
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79116058920
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5