BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492631
Length=1559
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22340.3 | Symbols: CDS2 | cytidinediphosphate diacylglycero... 2338 0.0
> AT4G22340.3 | Symbols: CDS2 | cytidinediphosphate diacylglycerol
synthase 2 | chr4:11799959-11802828 REVERSE LENGTH=1742
Length=1742
Score = 2338 bits (1266), Expect = 0.0
Identities = 1407/1475 (95%), Gaps = 9/1475 (1%)
Strand=Plus/Plus
Query 19 TTTTTGGCTTATCAATGGTTTGTATTTGCC--ATTTTTTCTA-CTTTCTCAATTTGTATT 75
||||||||||||||||| ||| || ||||| | | |||||| |||| | ||||||||
Sbjct 132 TTTTTGGCTTATCAATGATTTTTAGTTGCCAGAGTCTTTCTATCTTT-T--TTTTGTATT 188
Query 76 TTGATGTTAGGCTATGGTGATCCTGGATGTAGTGAAGCTCAATTTTAATTTTGTTCACAG 135
||| ||||| ||| |||||| || |||||| | ||| |||||||||| || |||||||
Sbjct 189 CTGACGTTAGACTAAGGTGATGCTAGATGTACTCAAGTTCAATTTTAA-ATT-TTCACAG 246
Query 136 GTAGTCAGTGTTTTTGTTTCCAACTCTGGGCAACATGCAAAAGGAAACGGCTGGTGATGC 195
|||||||||||||||||||| |||||| ||||||||| ||||||| |||||||||||
Sbjct 247 GTAGTCAGTGTTTTTGTTTCGAACTCT-TCCAACATGCAGAAGGAAATTGCTGGTGATGC 305
Query 196 TCCATCAGCACCTACCACTCGTGTTCGGCATCGGAAGCGGAACAGTGATGTTGGTGCAGG 255
|||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 306 TCCATCAGCACCAACCACTCGTGTTCGGCATCGGAAGCGAAACAGCGATGTTGGTGCAGG 365
Query 256 GGCAGGCAAACCAAATGGAAGCCATTTACTTGTCAATGACAGCAAAAAATACAAATCGTT 315
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 366 GGCAGGCAAACCAAATGGAAACCATTTACTTGTCAATGACAGCAAAAAATACAAATCGTT 425
Query 316 TCTCATTCGAGCATACTCCACTGTCTGGATGATTGGTGGTTTTGCTCTAATAGTTTACCT 375
|||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||
Sbjct 426 TCTCATTCGAGCATACTCCACTTTCTGGATGATAGGTGGTTTTGCTCTTATAGTTTACCT 485
Query 376 GGGTCATCTCTACATTACAGCCATGGTGGTTGTTATTCAGATATTCATGGCACGAGAACT 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 486 GGGTCATCTCTACATTACAGCCATGGTGGTTGTTATTCAGATATTCATGGCACGAGAACT 545
Query 436 TTTCAATTTGCTAAGAAAAACTCATGAAGACAAACAGCTCCCTGGTTTTAGATTACTGAA 495
||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 546 TTTTAATTTGCTGAGAAAAACTCATGAAGATAAACAGCTCCCTGGTTTTAGATTACTGAA 605
Query 496 TTGGCACTTCTTTTTCACAGCAATGCTCTTTGTATATGGTCGAATACTTAGTCAACGGCT 555
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 TTGGCACTTCTTTTTTACAGCAATGCTCTTTGTATATGGTCGAATACTTAGTCAACGGCT 665
Query 556 AGTCAACACTGTGACTCCAGACAAAGTCCTATATCGACTGGTCACCAGCCTCATCAAATA 615
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 666 AGTCAACACTGTGACTCCAGACAAAGTCCTATATCGACTGGTCACAAGCCTCATCAAATA 725
Query 616 CCACATGGCAATCTGTTACTCCTTGTATATTTCTGGCTTTGTTTGGTTTATTCTGACGCT 675
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 726 CCACATGGCAATCTGTTACTCCTTGTATATTTCTGGCTTTGTTTGGTTTATTCTCACGCT 785
Query 676 GAAAAAGAAGATGTACAAGTATCAGTTTAGCCAATATGCATGGACACATATGATCTTAAT 735
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 786 GAAAAAGAAGATGTACAAATATCAGTTTAGCCAATATGCATGGACACATATGATATTAAT 845
Query 736 TGTGGTGTTTACTCAGTCCTCATTTACCGTGGCCAACATCTTTGAAGGAATCTTCTGGTT 795
|||||||||||||||||||||||| || || |||||||||||||||||||||||||||||
Sbjct 846 TGTGGTGTTTACTCAGTCCTCATTCACTGTCGCCAACATCTTTGAAGGAATCTTCTGGTT 905
Query 796 TCTTCTTCCTGCATCACTTATCGTCATCAATGACATATTCGCATATATCTGTGGTTTCTT 855
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 906 TCTTCTTCCTGCATCACTTATCGTCATCAATGACATATTTGCATATATCTGTGGTTTCTT 965
Query 856 CTTTGGAAGAACACCATTGATCAAGTTATCACCAAAGAAAACATGGGAGGGTTTCATTGG 915
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 966 CTTTGGAAGAACACCGTTGATCAAGTTATCACCAAAGAAAACATGGGAGGGTTTCATTGG 1025
Query 916 AGCTTCTATTACCACAGTGATTTCTGCATTCCTGCTTGCAAATATAATGGGTCGTTTCCT 975
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1026 AGCTTCTATTACCACAGTGATTTCTGCATTCCTGCTTGCAAATATAATGGGTCGTTTCCT 1085
Query 976 GTGGCTGACATGTCCCAGAGAAGATCTATCGACAGGCTGGCTCCACTGTGACCCCGGTCC 1035
||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||
Sbjct 1086 GTGGCTGACATGTCCCAGAGAGGATCTATCGACAGGCTGGCTCCTCTGTGACCCTGGTCC 1145
Query 1036 ATTGTTCAAGCAAGAGACACATGCTTTACCAGGATGGATTTCTGATTGGCTCCCTTGGAA 1095
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1146 ACTGTTCAAGCAAGAGACACATGCTTTACCAGGATGGATTTCTGATTGGCTCCCTTGGAA 1205
Query 1096 GGAAATTTCTATTCTACCAGTTCAGTGGCATGCTCTGTGTCTTGGATTGTTCGCCTCTAT 1155
||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1206 GGAAATTTCGATTCTACCAGTCCAGTGGCATGCTCTATGTCTTGGATTGTTCGCCTCTAT 1265
Query 1156 AATAGCTCCTTTTGGTGGCTTCTTTGCCAGTGGTTTCAAAAGAGCATTCAAAATCAAGGA 1215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1266 AATAGCTCCTTTTGGTGGCTTCTTTGCCAGTGGTTTCAAAAGAGCATTCAAAATCAAGGA 1325
Query 1216 CTTTGGTGATAGTATTCCTGGACATGGCGGAATCACAGATAGAATGGATTGTCAGATGGT 1275
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1326 CTTTGGTGATAGTATTCCCGGACATGGCGGAATTACAGATAGAATGGATTGTCAGATGGT 1385
Query 1276 GATGGCTGTTTTTGCATATATATATCATCAATCGTTTGTTGTACCTGAAGTCCTCTCTGT 1335
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1386 GATGGCTGTTTTTGCCTATATATATCATCAATCGTTTGTTGTACCTGAAGTCCTCTCTGT 1445
Query 1336 GGATAAGCTCTTAGACCAGATAATCACAAGCCTGACATTGGAAGAACAACAAGCTCTATT 1395
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1446 GGATAAGCTCTTAGACCAGATAATCACAAGCCTGACATTGGAAGAACAACAAGCGCTACT 1505
Query 1396 CATGAAGCTTGGGCAAATGTTGCAGGAAAAGGTTATTGGATCTTAGATCATCACAACCCT 1455
| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1506 CGTGAAGCTTGGCCAAATGTTGCAGGAAAAGGTTATTGGATCTTAGATCATCACAACCCG 1565
Query 1456 TCATTGTATACCATATTACTCTTCTTCTGTGTTAC 1490
|||||||||||||||||||||| |||| |||||||
Sbjct 1566 TCATTGTATACCATATTACTCTGCTTCCGTGTTAC 1600
Score = 71.3 bits (38), Expect = 3e-11
Identities = 38/38 (100%), Gaps = 0/38 (0%)
Strand=Plus/Plus
Query 1522 CTTTATGAAAGAAAAGAAGCTCACTACAATTCTCTTAC 1559
||||||||||||||||||||||||||||||||||||||
Sbjct 1705 CTTTATGAAAGAAAAGAAGCTCACTACAATTCTCTTAC 1742
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76957435485
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5