BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492635
Length=929
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22320.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1319 0.0
> AT4G22320.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G55210.1);
Has 8953 Blast hits to 5363 proteins in 542 species: Archae
- 33; Bacteria - 806; Metazoa - 2454; Fungi - 831; Plants
- 279; Viruses - 151; Other Eukaryotes - 4399 (source: NCBI
BLink). | chr4:11792924-11794726 REVERSE LENGTH=1052
Length=1052
Score = 1319 bits (714), Expect = 0.0
Identities = 855/921 (93%), Gaps = 17/921 (2%)
Strand=Plus/Plus
Query 24 GTTGTGGAAGGAGTTGGGGCACGGTTAGGTAGGTCCTCGACTCGGTACGGACCAGCTACG 83
||| ||||||||||||| ||||||||||||||||||||||| ||||||||||| || |||
Sbjct 128 GTTATGGAAGGAGTTGGTGCACGGTTAGGTAGGTCCTCGACACGGTACGGACCGGCAACG 187
Query 84 GTATTCACCGGTCCGGTGAGGAAGTGGAAGAAGAAGTGGGTTCACGTCTCTCCCTCCACT 143
|| |||||||| ||||||||||||||||||||||||||||| ||||||||||| ||| ||
Sbjct 188 GTTTTCACCGGACCGGTGAGGAAGTGGAAGAAGAAGTGGGTACACGTCTCTCCTTCCTCT 247
Query 144 AAGAAAGAC---AATAATAGCTCCTCCGGCTCCGCCGCTGCAGCAGCTTCCGTCGTTAAC 200
||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 248 AAGAAAGACAATAATAATAGCTCCTCCGGTTCCGCCGCTGCTGCAGCTTCCGTCGTTAAC 307
Query 201 GGTGGTTCGAATTCTGACGGCAGTAATGGATCGCATTTGTTGCTGTATAAGTGGGCGCCA 260
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 308 GGTGGTTCGAATTCTGACGGTAGTAATGGATCGCATTTGTTGCTGTATAAGTGGGCACCA 367
Query 261 TTGTCTCAGAACGGTAACGGGGATGAAGATGGTAAAAGTGAGAGTAATTCTCCGAGTGAA 320
||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 368 TTGTCTCAGAATGGTAACGGCAATGAAGATGGTAAAAGTGAGAGTAATTCTCCGAGCGAG 427
Query 321 GACACGGTGACGACGGCGGCAGAAGATCCTCCCCGGCGTAGATTCAAATACGTTCCGATT 380
|| |||||| | |||| ||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 428 GATACGGTGGCAACGGTGGCAGAAGATCCTCCACGGCGGAGATTCAAATACGTTCCGATA 487
Query 381 GCTGTGCTTGAGGAACAGAAGAAGGAGATTACAGAGATTGAGGAAGATGATAAGATTGAG 440
|| || |||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 488 GCAGTACTTGAGGAACAGAAGAAGGAAATTACAGAAATTGAGGAAGATGATAAGATTGAG 547
Query 441 GAGGATGACAAGATTGAAGAGGATAATAAGGTCGAGCAGGAAGAAAAGGTTGATGAGGAC 500
||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||
Sbjct 548 GAGGATGACAAGATTGATGAGGATAATAAGGTTGAGCAGGAAGACAAGGTTGATGAGGAC 607
Query 501 AAAAGTTTAGAGGAGTCGAGCGAGAAG-AA----AA-CGGAAGTGGAGGAAAAGCCTGAC 554
|||| | |||||||||||||||||||| || || ||||||||||||||||||||||
Sbjct 608 AAAACTGTAGAGGAGTCGAGCGAGAAGAAAGCGGAAGTGGAAGTGGAGGAAAAGCCTGAC 667
Query 555 ATCAATGATGTTCCCATGGAAGATATTC--C-GGATGAAGAAAAAATAGTACAGGATGAT 611
|||||||||||||| ||||||||||||| | || |||||||||||||||||||||||||
Sbjct 668 ATCAATGATGTTCCGATGGAAGATATTCAGCAGGTTGAAGAAAAAATAGTACAGGATGAT 727
Query 612 GAAGAAAAAGTAGTGCGACAAGATTTGAACGAAAGCACTGTGGATTTAGGACTGAACTTA 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 728 GAAGAAAAAGTAGTGCGACAAGATTTGAACGAAAGCACTGTGGATTTAGGACTGAACTTA 787
Query 672 AATGCAAACGATG-TGGATGCTGAAAACGCCCCGAAAGAGGACAAGCCATTAGAAGAATG 730
||||||||||||| || |||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 788 AATGCAAACGATGCTG-ATGCAGAAAACGACCCGAAAGAGGACAAGCCATTAGAAGAATG 846
Query 731 ATAAACTGGGTGCATCGGGTTTGGTTCCTCGCCCTCAACTCTCAATATCA-TTAGGAAGA 789
||||||||||||||| | ||||||||||| ||||||||||||||||||| |||||||||
Sbjct 847 ATAAACTGGGTGCATTGT-TTTGGTTCCTCACCCTCAACTCTCAATATCAATTAGGAAGA 905
Query 790 AAGACAT-ACAGAAAGAACAGAGCAGTCATTAGATATGGACGCAAATCCTTGATTTGGTC 848
||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 906 AAGACATTACAGAAAGAACAAAGCAGTCATTAGATATGGACGCAGATCCTTGATTTGGTC 965
Query 849 TGTAACCCCATGGCTTATTCCTTTTGTTGTTAATGGAAACGGCTCATTGATTCAGACTGA 908
|||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||
Sbjct 966 TGTAACCCCATGGCTTATTCCTTTTGATGTTAATGGAAATGACTCATTGATTCAGACTGA 1025
Query 909 TCATTCAATTCATAGGAAATT 929
||||||||||||||||| |||
Sbjct 1026 TCATTCAATTCATAGGAGATT 1046
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45411668888
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5