BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492636
Length=555
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22310.1 | Symbols: | Uncharacterised protein family (UPF00... 771 0.0
> AT4G22310.1 | Symbols: | Uncharacterised protein family (UPF0041)
| chr4:11791321-11792876 FORWARD LENGTH=687
Length=687
Score = 771 bits (417), Expect = 0.0
Identities = 524/572 (92%), Gaps = 22/572 (4%)
Strand=Plus/Plus
Query 1 TCGATGGCGACTTCGAAGCTTCAAGCTATTTGGAATCACCCTGCCGGACCTAAAACCATT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TCGATGGCGACTTCGAAGCTTCAAGCTATTTGGAATCACCCTGCCGGACCTAAAACCATT 179
Query 61 CATTTCTGGGCTCCGACGTTCAAGTGGGGTATTAGCATTGCCAACATTGCAGACTTTGCC 120
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CATTTCTGGGCACCAACGTTCAAGTGGGGTATTAGCATTGCCAACATTGCAGACTTTGCC 239
Query 121 AAACCTCCAGAAAAACTTTCCTATCCTCAACAAATCGCCGTTACATGCACTGGAGTTATT 180
||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 240 AAACCTCCAGAGAAACTTTCCTATCCTCAACAAATCGCGGTTACATGCACTGGTGTTATT 299
Query 181 TGGTCTCGCTACAGCATGGTAATCAATCCGAAAAACTGGAACCTCTTCAGCGTTAATGTT 240
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 300 TGGTCTCGTTACAGCATGGTAATCAATCCGAAAAACTGGAACCTCTTCAGTGTTAATGTT 359
Query 241 GCTATGGCAGGGACAGGCATATACCAGCTTGCTCGTAAAATAAAACACGATTATGCAACT 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GCTATGGCAGGGACAGGCATATACCAGCTTGCTCGTAAAATAAAACACGATTATGCAACC 419
Query 301 GAAGCTGAGCCTGCTGTTGCGAATGAATGATTATGATGACGAAGCTGAGATTTC-AAAGG 359
|||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 420 GAAGCTGAGCCTGCCGTTGCGAGCGAATGATTATGATGACGAAGCTGAGATTTCTAAAGG 479
Query 360 AAAATTGGATATCATCTTGCTTCTGCTTGAAAATCTAGT-TCAAGATATTTGATTTTCTT 418
||| | ||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||
Sbjct 480 AAACT-GGATATCATCTTGCTTCTGTTTGAAAATCTAGTCTCAAGATATATGATTTTCTT 538
Query 419 TGCATTCCAAGTTTTTCTGACCGGATTACGATT-T--TTT--AAG-T-----A--T-T-C 463
| |||||||| | |||||| ||||| |||||| | ||| ||| | | | | |
Sbjct 539 TAAATTCCAAGATCTTCTGATCGGATCACGATTATCATTTCCAAGGTTTTTTAAGTATTC 598
Query 464 CTGTTTGACATTTGTTCAAATGATAAAGGAGGTCTAAAAGCTCCCTCTCTTCCTGTGCTG 523
|||||||||||||||||||||||||||||||||| ||||| ||||| || | || |||
Sbjct 599 CTGTTTGACATTTGTTCAAATGATAAAGGAGGTCAAAAAGTTCCCT-TCATA-TG--CTG 654
Query 524 CTTTGAAAGTAAATCATTAAGTACTCCACAGA 555
|||| |||||||||||| ||||||||||||||
Sbjct 655 CTTTTAAAGTAAATCATCAAGTACTCCACAGA 686
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26624097910
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5