BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492637
Length=1880
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22300.1 | Symbols: SOBER1 | carboxylesterases | chr4:117873... 1583 0.0
AT4G22305.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 992 0.0
AT1G18773.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 167 4e-40
> AT4G22300.1 | Symbols: SOBER1 | carboxylesterases | chr4:11787313-11789280
REVERSE LENGTH=1064
Length=1064
Score = 1583 bits (857), Expect = 0.0
Identities = 1006/1074 (94%), Gaps = 25/1074 (2%)
Strand=Plus/Plus
Query 812 ATCGATCTCCAAAGAAAAATGGTGAAGGCATGCGAACAAGTAGTAGACTGAAGAAGCCGA 871
||||||||| | || |||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1 ATCGATCTCGAGAG-AAAATGGTGAAGGCATGCGAAC-A--AGTAGACTGAAGAAGCCGA 56
Query 872 TCGTTCTTCTCACTATCGCACTATTGAGCTCTGTCTTCTTCTTCGTAATCTTCTTCCAAA 931
| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||
Sbjct 57 TTGTTCTTCTCACTATCGCACTATTGAGCTCTGTCTTCTTCTTCGCATTCTTCTTCCTAA 116
Query 932 ACAAATCTGACTTATCATCTACCTCTGGTATCACATCTTCTTCACGGAACCCAGACTCCA 991
||||||||||| |||||||||||||| | | | || |||||||| ||||||||
Sbjct 117 ACAAATCTGACGTATCATCTACCTCT-G--------C-T-TT-ACGGAACCGAGACTCCA 164
Query 992 TGGCTCGAACCTTCATCTTATGGCTTCACGGGCTTGGTGATTCCGGACCTGCCAACGAAC 1051
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 165 TGGCTCGAACCTTCATCTTATGGCTTCACGGGCTAGGTGATTCCGGACCTGCCAACGAAC 224
Query 1052 CCATCAAAACACTTTTCAGGTCACC-GGAGTTTAGAAACACTAAGTGGCTCTTCCCTTCT 1110
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 225 CCATCAAAACACTTTTCAGGTC-CCAGGAGTTTAGAAACACTAAGTGGCTCTTCCCTTCT 283
Query 1111 GCTCCACCAAATCCAGTCTCTTGCAATTATGGTGCAGTGATGCCTTCGTGGTTTGACATC 1170
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 284 GCTCCACCAAATCCAGTCTCTTGCAATTATGGTGCAGTGATGCCTTCTTGGTTTGACATC 343
Query 1171 CCTGAGCTTCCTCTTACTGCGGGATCTCCGAAAGATGAAAGCAGTTTGCTTAAAGCAGTT 1230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 344 CCTGAGCTTCCTCTTACTGCGGGATCTCCGAAAGATGAAAGCAGTTTGCTTAAAGCAGTT 403
Query 1231 ACGAACGTTCATGCCATTATAGATAAGGAGATTGCAGGAGGAATCAATCCAGAAAATGTG 1290
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 404 AAGAACGTTCATGCCATTATAGATAAGGAGATTGCAGGAGGAATCAATCCAGAAAATGTG 463
Query 1291 TATATCTGTGGATTTAGCCAAGGAGGTGCATTAACCTTGGCTAGTGTTCTTCTTTACCCT 1350
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 464 TATATCTGTGGATTTAGCCAAGGAGGTGCATTAACCTTGGCGAGTGTTCTTCTTTACCCT 523
Query 1351 AAAGCTCTTGGAGGAGGTTCAGTCTTTAGCGGATGGATTCCATTCAATTCTTCAATCACC 1410
||| || ||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 524 AAAACTATTGGAGGAGGTGCAGTCTTTAGCGGATGGATTCCATTCAATTCTTCGATCACC 583
Query 1411 AATCAGTTTAGCGAAGATGCTAAAAAGACACCAATCTTGTGGTCTCATGGCATTGATGAC 1470
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 584 AATCAGTTTACCGAAGATGCTAAAAAGACACCAATCTTGTGGTCTCATGGCATTGATGAC 643
Query 1471 AAGACTGTGCTATTCGAAGCTGGTCAAGCAGCTCTTCCTTTTCTTCAACAAGCTGGTGTG 1530
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 644 AAGACTGTACTATTCGAAGCTGGTCAAGCAGCTCTTCCTTTTCTTCAACAAGCGGGTGTG 703
Query 1531 ACTTGTGAATTCAAGGCGTATCCTGATCTTGGACACTCAATCAGTAATAAGGAGCTGCAA 1590
||||||||||||||||| ||||| | |||||||||||||||||||||| ||||||||||
Sbjct 704 ACTTGTGAATTCAAGGCTTATCCGGGTCTTGGACACTCAATCAGTAATGAGGAGCTGCAG 763
Query 1591 TATTTGGAGTTATGGATCAAACAACGGATGCAGAGCTCTTCGTCTTCTTCTTAAAATGGT 1650
||| |||||| |||| | ||||||||||||||||||||||| |||||||| |||||||||
Sbjct 764 TATCTGGAGTCATGGTTAAAACAACGGATGCAGAGCTCTTCTTCTTCTTCATAAAATGGT 823
Query 1651 ATTAAAAGGCAACATTGTACTCAAGGTAATAACATCCTATTGCCTA-CAAGATTAGAAGA 1709
|| ||||||||| ||||||||||||||| ||||||||| | |||| |||||||||||||
Sbjct 824 TTTTAAAGGCAACTTTGTACTCAAGGTAACAACATCCTAGTACCTATCAAGATTAGAAGA 883
Query 1710 AAAATGATAACATCAGCTCATCTCTGGTCCA-GTTTCTCTATAATGAAAACCGGTTTTTG 1768
||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| | |
Sbjct 884 AAAATGATAACATCAGCTCATCTCTGGTCCAAGTTTCTCTATCATGAAAACCGGTTCT-G 942
Query 1769 GTTTAATCG-TCTTGTTTGGTTATGTAAACGGTTACTTTTGTTAACTACAAAACATTTTG 1827
||| || | |||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 943 GTTGAACCAATCTTGTTTGGTTATGTAAACCGTTACTTTTGTTAACTACAA--CATTTTG 1000
Query 1828 T-TACTTTGCATTGATTTGAAAAATTATATGTCAACACTAGAATTCTTTTATTT 1880
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1001 CGTACTTTGCATTGATTTGAAAAATTATATGTCAACACTAGAATTCTTTTATTT 1054
> AT4G22305.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr4:11789332-11791191 REVERSE LENGTH=1037
Length=1037
Score = 992 bits (537), Expect = 0.0
Identities = 602/634 (95%), Gaps = 2/634 (0%)
Strand=Plus/Plus
Query 1 ATGGCTCGAACTTTCATCTTGTGGCTTCATGGGTTGGGCGATTCTGGACCTGCTAATGAA 60
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 137 ATGGCTCGAACTTTCATCTTGTGGCTTCACGGGTTGGGAGATTCTGGACCTGCTAATGAA 196
Query 61 CCCATCCAAACTCAATTCAAATCCCCCGAGTTAAGTAACGCTAGTTGGCTCTTCCCTTCT 120
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 197 CCCATCCAAACTCAATTCAAATCCTCGGAGTTAAGTAACGCTAGTTGGCTCTTCCCTTCT 256
Query 121 GCTCCATTCAATCCGGTTACCTGCAACAATGGTGCGGTGATGCGTTCTTGGTTTGACGTT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 257 GCTCCATTCAATCCGGTTACCTGCAACAATGGTGCGGTGATGCGTTCTTGGTTTGACGTT 316
Query 181 CCTCAACTTCCTTTTAAAGTGGGCTCTCCAATTGATGAAAGCAGCGTGCTTGAAGCAGCT 240
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 317 CCTGAACTTCCTTTTAAAGTGGGCTCTCCAATTGATGAAAGCAGCGTGCTTGAAGCAGTT 376
Query 241 AAAAACGTTCATGCTATTATAGACCAAGAGATTGCAGAGGGAACAAATCCAGAAAACGTG 300
|| || |||||||| ||||||||||| ||||||||||| ||||| |||||||||||||||
Sbjct 377 AAGAATGTTCATGCCATTATAGACCAGGAGATTGCAGAAGGAACTAATCCAGAAAACGTG 436
Query 301 TTTATCTGTGGATTAAGCCAAGGAGGAGCATTGACTTTGGCTAATGTTCTGCTTTACCCA 360
|||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||
Sbjct 437 TTTATCTGTGGATTAAGCCAAGGAGGAGCATTAACCTTGGCTAGTGTTCTGCTTTACCCA 496
Query 361 AAAACTCTTGGAGGTGGAGCAGTTCTAAGCGGATGGGTTCCATTCAGTTCTTCAGTCATC 420
|||||||||||||| || || || ||||| |||||||||||||||| ||||||| |||||
Sbjct 497 AAAACTCTTGGAGGAGGTGCCGTCCTAAGTGGATGGGTTCCATTCACTTCTTCAATCATC 556
Query 421 AGTCAATTTCCTGAAGAGGCTAAGAAGACACCAATCTTGTGGTCGCATGGCACTGATGAC 480
||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 557 AGTCAGTTTCCCGAAGAGGCTAAGAAGACACCAATCTTGTGGTCTCATGGCACTGATGAC 616
Query 481 AAAATGGTACTCTTTGAAGCTGGTCAAGCTGCTCTTCCTTTTCTTAAAGAAGCCGGTGTT 540
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 617 AGAATGGTACTCTTTGAAGCTGGTCAAGCTGCTCTTCCTTTTCTCAAAGAAGCCGGTGTT 676
Query 541 ACCTGTGAATTCAAGTCATATCCGGGTCTCGGGCACTCGATCAGCAATAAGGAGCTGAAG 600
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 677 ACCTGTGAATTCAAGGCATATCCTGGTCTCGGGCACTCGATCAGCAATAAGGAGCTGAAG 736
Query 601 TATATAGAGTCATGGATCAA-ACGACGATTGAAA 633
|||||||||||||||||||| | |||| ||||||
Sbjct 737 TATATAGAGTCATGGATCAAGA-GACGGTTGAAA 769
Score = 614 bits (332), Expect = 1e-174
Identities = 551/655 (84%), Gaps = 22/655 (3%)
Strand=Plus/Plus
Query 967 TCTTCTTCACGGAAC-CCAGACTCCATGGCTCGAACCTTCATCTTATGGCTTCACGGGCT 1025
||||||||||||||| | || | | ||||||||||| |||||||| |||||||||||| |
Sbjct 113 TCTTCTTCACGGAACTCAAG-CACGATGGCTCGAACTTTCATCTTGTGGCTTCACGGG-T 170
Query 1026 T-GGTGATTCCGGACCTGCCAACGAACCCATCAAAACACTTTTCAGGTCAC-CGGAGTTT 1083
| || ||||| |||||||| || ||||||||| |||| | |||| || | |||||||
Sbjct 171 TGGGAGATTCTGGACCTGCTAATGAACCCATCCAAACTCAATTCAAATC-CTCGGAGTTA 229
Query 1084 AGAAACACTAAG-TGGCTCTTCCCTTCTGCTCCA-CCAAATCCAGTCT-CTTGCAATTAT 1140
|| ||| || || ||||||||||||||||||||| | ||||| || | | ||||| ||
Sbjct 230 AGTAACGCT-AGTTGGCTCTTCCCTTCTGCTCCATTC-AATCCGGT-TACCTGCAACAAT 286
Query 1141 GGTGCAGTGATGCCTTCGTGGTTTGACATCCCTGAGCTTCCTCTTACTGCGGGATCTCCG 1200
||||| ||||||| ||| ||||||||| | ||||| |||||| ||| | ||| |||||
Sbjct 287 GGTGCGGTGATGCGTTCTTGGTTTGACGTTCCTGAACTTCCTTTTAAAGTGGGCTCTCC- 345
Query 1201 AA-AGATGAAAGCAGTTTGCTTAAAGCAGTTACGAACGTTCATGCCATTATAGATAAGGA 1259
|| ||||||||||| ||||| ||||||||| ||| ||||||||||||||||| ||||
Sbjct 346 AATTGATGAAAGCAGCGTGCTTGAAGCAGTTAAGAATGTTCATGCCATTATAGACCAGGA 405
Query 1260 GATTGCAGGAGGAATC-AATCCAGAAAATGTGTATATCTGTGGATTTAGCCAAGGAGGTG 1318
|||||||| ||||| | ||||||||||| |||| |||||||||||| ||||||||||| |
Sbjct 406 GATTGCAGAAGGAA-CTAATCCAGAAAACGTGTTTATCTGTGGATTAAGCCAAGGAGGAG 464
Query 1319 CATTAACCTTGGCTAGTGTTCTTCTTTACCCTAAAGCTCTTGGAGGAGGTTCAGTCTTTA 1378
|||||||||||||||||||||| |||||||| ||| |||||||||||||| | ||| | |
Sbjct 465 CATTAACCTTGGCTAGTGTTCTGCTTTACCCAAAAACTCTTGGAGGAGGTGCCGTCCTAA 524
Query 1379 GCGGATGGATTCCATTCAATTCTTCAATCACCAATCAGTTTAGCGAAGATGCTAAAAAGA 1438
| |||||| ||||||||| ||||||||||| || ||||||| |||||| ||||| ||||
Sbjct 525 GTGGATGGGTTCCATTCACTTCTTCAATCATCAGTCAGTTTCCCGAAGAGGCTAAGAAGA 584
Query 1439 CACCAATCTTGTGGTCTCATGGCATTGATGACAAGACTG-TGCTATTCGAAGCTGGTCAA 1497
|||||||||||||||||||||||| |||||||| || || | || || ||||||||||||
Sbjct 585 CACCAATCTTGTGGTCTCATGGCACTGATGACA-GAATGGTACTCTTTGAAGCTGGTCAA 643
Query 1498 GCAGCTCTTCCTTTTCTTCAAC-AAGCTGGTGTGACTTGTGAATTCAAGGCGTATCCTGA 1556
|| |||||||||||||| ||| |||| ||||| || |||||||||||||| |||||||
Sbjct 644 GCTGCTCTTCCTTTTCT-CAAAGAAGCCGGTGTTACCTGTGAATTCAAGGCATATCCTGG 702
Query 1557 TCTTGGACACTCAATCAGTAATAAGGAGCTGCAA-TATTTGGAGTTATGGATCAA 1610
||| || ||||| ||||| |||||||||||| || ||| | |||| |||||||||
Sbjct 703 TCTCGGGCACTCGATCAGCAATAAGGAGCTG-AAGTATATAGAGTCATGGATCAA 756
> AT1G18773.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; BEST Arabidopsis thaliana protein match
is: carboxylesterases (TAIR:AT4G22300.1); Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:6474802-6475904
FORWARD LENGTH=850
Length=850
Score = 167 bits (90), Expect = 4e-40
Identities = 102/108 (94%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 1438 ACACCAATCTTGTGGTCTCATGGCATTGATGACAAGACTGTGCTATTCGAAGCTGGTCAA 1497
|||||| ||||||||||||||||||||||||| ||| |||| ||||||||||||||||||
Sbjct 219 ACACCAGTCTTGTGGTCTCATGGCATTGATGAAAAGGCTGTACTATTCGAAGCTGGTCAA 278
Query 1498 GCAGCTCTTCCTTTTCTTCAACAAGCTGGTGTGACTTGTGAATTCAAG 1545
|||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 279 GCAGCTCTTCCTTTTCTTCAACAAGCTGGTTTGACTTATGAATTCAAG 326
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93071810430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5