BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492638
Length=1684
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22290.1 | Symbols: | Ubiquitin-specific protease family C1... 2632 0.0
> AT4G22290.1 | Symbols: | Ubiquitin-specific protease family
C19-related protein | chr4:11782905-11785816 REVERSE LENGTH=1718
Length=1718
Score = 2632 bits (1425), Expect = 0.0
Identities = 1619/1709 (95%), Gaps = 28/1709 (2%)
Strand=Plus/Plus
Query 1 tctctctcttctgaagcactcaaagagtaaagtttctctgcattttag---ct-tctctc 56
||||||||||||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 13 TCTCTCTCTTCTGAAGCACTCAAAGAGTAAAGTTTCTCTGCATTTCAGCTTCTCTCTCTC 72
Query 57 -tctctc--tAGAAATGGCGGGTCGGATCCAATCCCACCAGCTACCAAATGGACTCTACG 113
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 73 TTCTCTCTGTAGAAATGGCGGGTCGGATCCAATCCCACCAGCTACCAAATGGACTCTACG 132
Query 114 TATCGGGTAAGCTCGAGCAACCAAAAGAACGACCACCGACAATGGCGGCTCGAGCTGTGC 173
||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 133 TATCGGGAAAGCTTGAGCAACCAAAAGAGCGACCACCGACAATGGCGGCTCGAGCTGTGC 192
Query 174 CTTACACCGGAGGCGATATCAAGAAATCCGGCGAGCTCGGAAGGATGTTCGACATCTCCG 233
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 193 CTTACACCGGAGGCGACATCAAGAAATCCGGCGAGCTCGGAAGGATGTTCGACATCTCCG 252
Query 234 TCGTCGATTCGGCTTCTTTTCAAGGACCACCGCCGTTAATCGTCGGTGGTAATAGCAGCG 293
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 253 TCGTCGATTCAGCTTCTTTTCAAGGACCACCGCCGTTAATCGTCGGTGGTAATAGCAGCG 312
Query 294 GAGG-AGCATCAAGGCTTCAGGCGCCGCCACGCGTCTCCGGTTCTTCTTCAAACCCTAAC 352
|||| | | ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 313 GAGGTA-CGTCAAGGCTTCAGGCGCCGCCACGTGTCTCCGGTTCTTCTTCAAACCCTAAC 371
Query 353 AGTGGATCCGTTCGATCTGGTCCCAACTCCGGTTCGGTTAAGAAATTCTCAGGTCCACTC 412
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 372 AGTGGATCCGTTCGATCTGGTCCCAACTCTGGTTCGGTTAAGAAATTCTCAGGTCCACTC 431
Query 413 TCTCAGCTTCAGCCAACCGGTTTAATTACCTCCGGTTCTCTCGGTTCTTCGGGTCCAATT 472
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 432 TCTCAGCTTCAGCCAACCGGTTTAATTACCTCCGGTTCTCTTGGTTCTTCGGGTCCAATT 491
Query 473 TTATCCGGGTCTAGAAGGTCGGGTCAATTGGATCACCAGTTGAGTAATTTAGCGTCGAGC 532
|| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 492 TTGTCCGGGTCTAGAAGGTCGGGTCAATTGGATCACCAATTGAGTAATCTAGCGTCGAGC 551
Query 533 AAGCCTAAATACGGGTCGTCGGTGACGAGTCTTAACGTAGACCCGGTTCGGGTCGGGTTT 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 552 AAGCCTAAATACGGGTCGTCGGTGACGAGTCTTAACGTAGACCCGGTTCGGGTCGGGTTT 611
Query 593 AAAGTACCAAAAGCGATGGTTTGGGCGGTTTTGATTGTGGCGGCGATGGGATTGCTTGTT 652
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 612 AAAGTACCAAAAGCAATGGTTTGGGCGGTTTTGATAGTGGCGGCGATGGGATTGCTTGTG 671
Query 653 GGAGCGTTTCTTACCGTGGCGGTGAAGAAACCGGTGGTGATTGCAGCGGTTTTAGCGGCG 712
||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 672 GGAGCTTTTCTTACTGTGGCGGTGAAGAAACCGGTGGTGATTGCTGCGGTTTTAGCAGCA 731
Query 713 GTTTGTCCCGCAATCGTGGTTTTGATTTGGAATTGCGTTTGGAGAAGAAACGGATTATTG 772
|||||||| ||||||||||||||| ||||||||||||||||||||||||| || || |||
Sbjct 732 GTTTGTCCTGCAATCGTGGTTTTGGTTTGGAATTGCGTTTGGAGAAGAAAAGGGTTGTTG 791
Query 773 AGTTTCATCAAAAAGTATCCAGATGCTGAGCTTAGAGGCGCCATTGATGGACAATTCGTC 832
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 792 AGTTTTATCAAAAAGTATCCAGATGCTGAGCTTAGAGGTGCCATTGATGGACAATTCGTT 851
Query 833 AAAGTTACAGGGGTTGTGACATGTGGAAGCATTCCTTTGGAGTCTTCATACCAAAGAACA 892
|| |||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||
Sbjct 852 AAGGTTACAGGGGTTGTGACATGTGGAAGCATTCCTTTGGAATCTTCGTTCCAAAGAACA 911
Query 893 CCAAGATGTGTTTATGTATCCACGGAGTTGTATGAGTACAAAGGTTTTGGTGGGAAATCC 952
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 912 CCAAGATGCGTTTATGTATCCACGGAGTTGTATGAATACAAAGGTTTTGGTGGGAAATCC 971
Query 953 GCAAACCCAAAACATCGATGCTTTTCTTGGGGATCTAGACATGCAGAGAAATATGTGTCG 1012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 972 GCAAACCCAAAACATCGATGCTTTTCTTGGGGATCTAGACATGCAGAGAAATATGTGTCG 1031
Query 1013 GACTTTTACATCTCAGATTTCCAATCTGGATTGCGGGCGCTAGTAAAAGCTGGATATGGA 1072
|| ||||||||||| |||||||||||||||||||| || ||||||||||| |||||||||
Sbjct 1032 GATTTTTACATCTCGGATTTCCAATCTGGATTGCGAGCACTAGTAAAAGCAGGATATGGA 1091
Query 1073 TCAAAAGTTTCTCCTTTTGTTAAACCGGCGACAGTGGCTAATGTAACAACGCAGAACAAA 1132
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1092 TCAAAAGTTTCTCCTTTTGTCAAACCGGCGACAGTGGCTAATGTAACAACGCAGAACAAA 1151
Query 1133 GATTTGTCTCCCAGCTTCTTAAAGTGGCTGTCGGATCGCAACCTCTCAGCCGATGACCGT 1192
||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1152 GATTTATCTCCCAGCTTCTTAAAGTGGCTGTCAGATCGCAACCTCTCAGCTGATGACCGT 1211
Query 1193 GTCATGCGCCTCAAAGAAGGATATATAAAAGAAGGAAGCACAGTGAGCGTGATGGGGATG 1252
|| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1212 GTTATGCGTCTCAAAGAAGGATACATAAAAGAAGGAAGCACAGTGAGCGTGATGGGGATG 1271
Query 1253 GTGAGAAGACACGACAACGTGCTGATGATAGTTCCTCCGGCAGAAGCAGTCTCCAGTGGG 1312
|| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1272 GTAAGAAGGCACGACAACGTTCTGATGATAGTTCCTCCGGCAGAAGCAGTCTCCAGTGGG 1331
Query 1313 TGCCGGTGGTGGCACTGCCTCTTCCCAACCTATGCAGATGGCTTAATCATCACCTGTGAC 1372
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct 1332 TGCCGGTGGTGGCACTGCCTCTTCCCAACCTACGCAGATGGCTTAATCATAACCTGCGAC 1391
Query 1373 GATAATCAAAACGCTGATGTCATTCCTGTCTGAA-CCAATATGTATGTAATGCTCCTTTT 1431
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 1392 GATAATCAAAACGCTGATGTCATTCCTGTCTGAAACCAATATGTATGTAATGCTTCTTTT 1451
Query 1432 GCCCAATATTCAAATATATAAATGCTTAAAGAGTTAGGCTCACGAGACTGAAGGAAG-A- 1489
|||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
Sbjct 1452 GCCCGATATTCAAATATAAAAATGCTTAAACAGTTAGGCTCACGAGACTGAAGGAAGGAA 1511
Query 1490 GA-A-GAGA-G-G--GA-------TGAGAGGACAGCCAAATTGGTTCAAAAAAGAAAACC 1536
|| | |||| | | || |||||||||||||||||||||||||||| |||||||
Sbjct 1512 GAGAAGAGAAGAGAAGAGAGGGAATGAGAGGACAGCCAAATTGGTTCAAAAA-GAAAACC 1570
Query 1537 AAATGGGctttgccttttgcct-attagcttttgtttttctttcttaattctgttttttt 1595
|||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 1571 AAATAGGCTTTGCCTTTTACCTTATTAGCTTTTGTTTTTCTTTCTTAATTCTGTTTTTTT 1630
Query 1596 ttttttGCCCCTTCTATGGGGTTTATGTTTGTGTACATAGAGCCCCAAAGTGTAAATGCT 1655
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1631 TTTTT-GCCCCTTGTATGGGGTTTATGTTTGTGTACATAGAGCCCCAAAGTGTAAATGCT 1689
Query 1656 ATTTTCTGTTTAAATAATTATTATGTCCT 1684
||||||||| ||||||||||||||||||
Sbjct 1690 CTTTTCTGTTAAAATAATTATTATGTCCT 1718
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83232503610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5