BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492639
Length=1532
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22270.1 | Symbols: MRB1, ATMRB1 | Protein of unknown functi... 2183 0.0
AT4G03820.2 | Symbols: | Protein of unknown function (DUF3537)... 606 2e-172
> AT4G22270.1 | Symbols: MRB1, ATMRB1 | Protein of unknown function
(DUF3537) | chr4:11773328-11776039 FORWARD LENGTH=1639
Length=1639
Score = 2183 bits (1182), Expect = 0.0
Identities = 1400/1503 (93%), Gaps = 24/1503 (2%)
Strand=Plus/Plus
Query 25 CTCTCATGGCGACGAACGCATCATCGGAGCATCTACTCCCGGAGACGACCAGACCAAGCG 84
|||||||||||||||||| ||| ||||||||||| |||||||||||||| ||||||||||
Sbjct 64 CTCTCATGGCGACGAACGGATCGTCGGAGCATCTTCTCCCGGAGACGACAAGACCAAGCG 123
Query 85 CGATCATCAAC--A-AACAACCGGAGTTTCCAGCATCACGGTTCACGTTCATGTCCCTCG 141
||||||||||| | |||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 124 CGATCATCAACAAACAACAACCGGAGTTTCCTGCATCACGATTCACGTTCATGTCCCTCG 183
Query 142 TGCTCTGGTTCGACCAGTCAAATCACGGCACGGCTCTGCTTTCGTGGTCCGTGTTCTTCC 201
||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||
Sbjct 184 TGCTCTGGTTCGACCAGTCAAATTTCGGTACGGCTCTGCTTTCGTGGTCCGTTTTCTTCC 243
Query 202 TTCTCGTCGTCATCGTTCCGATAATCTCTCACTTCTTGCTCGTCTGTTCAGACTGCGATT 261
||||||||||||||||||| | |||||||||||||||||||| || || ||||||||||
Sbjct 244 TTCTCGTCGTCATCGTTCCTTTGATCTCTCACTTCTTGCTCGTTTGCTCCGACTGCGATT 303
Query 262 TCCATCACCGACGACCGTACGACGCCGTGGTACAGCTTTCGTTATCGATTTTCGGC-GGA 320
||||||||||||| |||||||||| | || ||||||||||||||||||||| || |||
Sbjct 304 TCCATCACCGACGTCCGTACGACGTTATTGTGCAGCTTTCGTTATCGATTTTC-GCAGGA 362
Query 321 ATCTCGTTCGTTAGCCTCTCGATTTGGTCGAGGAAGTTTGGGATGCGACGGTTTTTGTTT 380
||||||||||||||| | |||||||||||||| || |||||||||||||||||||||||
Sbjct 363 ATCTCGTTCGTTAGCTTATCGATTTGGTCGAGAAAATTTGGGATGCGACGGTTTTTGTTC 422
Query 381 CTTGATAAGCTTTGGGATGCTAGCGACAAAGTTAGGATCGAATACGAAGCTGAAATTCAG 440
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 423 CTTGATAAGCTTTGGGATGTTAGCGACAAAGTTAGAATCGAATACGAAGCTGAAATTCAG 482
Query 441 AGATCACTAAAACGGCTAATGATCTTCGTCCTCCCATCACTAACACTCGAAGCAATCTAC 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 483 AGATCACTAAAACGGCTAATGATCTTCGTCCTCCCATCACTAACACTCGAAGCAACCTAC 542
Query 501 AGAATCTGGTGGTACATCTCTGGCTCTC-ACGAGATTCCTTACATCATCAATCCTGTTCT 559
||||||||||||||||||||||||| || || ||||||||||||||||||||||| ||||
Sbjct 543 AGAATCTGGTGGTACATCTCTGGCT-TCAACCAGATTCCTTACATCATCAATCCTATTCT 601
Query 560 TAGCCACGTCGTCGCTTGCACTCTCCAGCTATCTTCTTGGCTTTACCGTACCTCTTTATT 619
|||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||
Sbjct 602 TAGCCACGTCGTCGCTTGCACTCTCCAGCTCTCTTCTTGGCTTTACCGTAACTCCTTATT 661
Query 620 CATCATTGTCTGCATTCTCTACAAAATCACATGTCATCTTCAGACTCTTCGTCTCGATGA 679
||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||
Sbjct 662 CATCATTGTCTGCATTCTCTACAAAATCACATGTCATCTACAAACTCTTCGTCTTGATGA 721
Query 680 TTTCGCTCGCTGCTTCGCTTCTGAAATCACTGACGTTCGCTCAGCTCTCGGCGAGCATCA 739
|||||||| |||||||||||||| |||||||||||| | ||||||||||||||||||||
Sbjct 722 CTTCGCTCGTTGCTTCGCTTCTGAGATCACTGACGTTAGATCAGCTCTCGGCGAGCATCA 781
Query 740 AAAGATCCGTCGTAATTTGAGGATTGTTAGTCATCGGTTCAGGAGATTTATTCTTTTGTC 799
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 782 AAAGATTCGTCGTAATTTGAGGATTGTTAGTCATCGATTCAGGAGATTTATTCTTTTGTC 841
Query 800 TTTGATTCTTGTTACTGCTACTCAGTTCATGGCTTTGCTTACTACTACGAGAGCTAGTGT 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 TTTGATTCTTGTTACTGCTACTCAGTTCATGGCTTTGCTTACTACTACGAGAGCTAGTGT 901
Query 860 TGCTGTTAATATCTATGAAGTTGGCGAGCTCGCGTTATGTTCATTGAGTTTGGTTACAGG 919
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 902 TGCTGTTAATATCTATGAAGTTGGCGAACTCGCGTTATGTTCGTTGAGTTTGGTTACAGG 961
Query 920 AGTATTCATATGTTTGAGAAGTGCAACGAAGATAACTCACAAAGCTCAATCTGTAACCAG 979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 962 AGTATTCATATGTTTGAGAAGTGCAACGAAGATAACTCACAAAGCTCAATCTGTAACCAG 1021
Query 980 CCTTGCAGCTAAATGGAACGTTTGCGCCACAGTTGACTCGTTCGATCATCTTGATGGCGA 1039
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1022 CCTTGCAGCTAAATGGAACGTTTGCGCAACAGTTGACTCGTTTGATCATCTTGATGGCGA 1081
Query 1040 AACTCCTACTGGTTCCATGATTGAATCTCAAGTTTCCCCATGTGGCAATGCGATGGATAC 1099
|||||||||||||||||| ||||||||||||||||||| | | ||||||||||| || ||
Sbjct 1082 AACTCCTACTGGTTCCATTATTGAATCTCAAGTTTCCCTACGCGGCAATGCGATAGAGAC 1141
Query 1100 GTCTGATGATGAAGAAGGAGAAGGAGATGACGATCTTGATAATACCAAGATACATCCGAT 1159
||||||||||||||||||||||||||| || ||||| |||||||||||||||||||| ||
Sbjct 1142 GTCTGATGATGAAGAAGGAGAAGGAGACGATGATCTCGATAATACCAAGATACATCCCAT 1201
Query 1160 TTACGCCAATACAATTTCTTACCAAAAACGTCAAGCTCTAGTGACGTATTTAGAGAACAA 1219
|| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1202 CTATGCCAATACAATTTCTTACCAAAAACGTCAAGCTCTAGTGACGTATCTAGAGAACAA 1261
Query 1220 CAAAGCTGGGATCACTGTGTATGGCTTCCTTGTAGATAGGTCATGGTTGCATACGATTTT 1279
|||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||
Sbjct 1262 CAAAGCTGGGATCACTGTGTATGGATTCCTTGTAGATAGATCATGGTTGAATACGATTTT 1321
Query 1280 CGGCATTGAACTCGCTCTTCTACTATGGTTGCTCAATAAAACAATCGTGAATATACCATG 1339
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1322 CGGGATTGAGCTCGCTCTTCTACTATGGTTGCTCAATAAAACAATCGTGAATATACCATG 1381
Query 1340 AACAAA---T-----------AATATATGAATCGTTTTGGCATGGTGTTTCTCTCCAAGA 1385
|||||| | ||||||||||| ||||||||||| |||||||||||||||
Sbjct 1382 AACAAACACTTGGTTCTTTGTAATATATGAATTGTTTTGGCATGATGTTTCTCTCCAAGA 1441
Query 1386 TATGATGAAGAACAGTAGAGAAGATTTTTCACGGTGGCGATGATAT--GTCTCTCTCCTC 1443
|||||||||||||||||||| |||||||||||||||| |||||||| |||||||||| |
Sbjct 1442 TATGATGAAGAACAGTAGAGGAGATTTTTCACGGTGGTGATGATATATGTCTCTCTCCAC 1501
Query 1444 CTTAGTTGTTTAGTTACAAATCTGGAGATATGACAACTATTTTTGGTTCATCTATAGATA 1503
||| |||||||||||||||| | |||||| |||||||||||||||| || ||||||||
Sbjct 1502 -TTACTTGTTTAGTTACAAATGTTGAGATACAACAACTATTTTTGGTTAATATATAGATA 1560
Query 1504 TAA 1506
|||
Sbjct 1561 TAA 1563
> AT4G03820.2 | Symbols: | Protein of unknown function (DUF3537)
| chr4:1771887-1774422 REVERSE LENGTH=1680
Length=1680
Score = 606 bits (328), Expect = 2e-172
Identities = 946/1232 (77%), Gaps = 91/1232 (7%)
Strand=Plus/Plus
Query 144 CTCTGGTTCGACCAGTCAAATCACGGCACGGCTCTGCTTTCGTGGTCCGTGTTCTTCCTT 203
|||||||| || || ||||||| | || ||||||| || |||||| | ||||||||
Sbjct 151 CTCTGGTTTGATCAATCAAATCGCATCAAAACTCTGCTCTCATGGTCCATCTTCTTCCTC 210
Query 204 CTCGTCGTCATCGTTCCGATAATCTCTCACTTCTTGCTCGTCTGTTCAGACTGCGATTTC 263
|||| ||||||||| || || ||||| |||||| |||| |||| | || |||||||||
Sbjct 211 CTCGCCGTCATCGTCCCAATGATCTCACACTTCGTGCTAATCTGCGCCGATTGCGATTTC 270
Query 264 CATCACCGACGACCGTACGACGCCGTGGTACAGCTTTCGTTATCGATTTTCGGCGGAATC 323
| ||||| || || ||||||| | || ||||||||||||||||| |||| |||||||
Sbjct 271 AAACACCGTCGTCCTTACGACGGTTTAGTGCAGCTTTCGTTATCGATCTTCGCCGGAATC 330
Query 324 TCGTTCGTTAGCCTCTC-GATTTGGTCGAGGAAGTTTGGGATGCGACGGTTTTTGTTTCT 382
||||||||||| ||||| || |||||| | ||| | ||| || ||| ||||| | ||||
Sbjct 331 TCGTTCGTTAGTCTCTCAGA-TTGGTCCAAGAAATATGGAATCCGAAGGTTTCT-CTTCT 388
Query 383 T-GATAAGCTTTGGGATGCTAGCGACAAAGTTAGGATCGAATACGAAGCTGAAATTCAGA 441
| ||||||||| |||| |||||| ||||||||||||| |||||||||| |||| ||||
Sbjct 389 TCGATAAGCTTAAAGATGTTAGCGATAAAGTTAGGATCGGATACGAAGCTAAAATCCAGA 448
Query 442 GATCACTAAAACGGCTA-ATGATCTTCGTCCTCCCATC-ACTAACAC-TCGAAGCAATCT 498
||||| | || | ||| | ||||| ||||| ||||| || ||| | || |||| ||||
Sbjct 449 GATCAATGAAGCTACTAGCT-ATCTTTGTCCTTCCATCGAC-AACGCTTC-AAGCTATCT 505
Query 499 A-CAGAATCTGGTGGTACAT-C-TCTGGCTCTCACGAGATTCCTTACATCATCAATCCTG 555
| | | || ||||||| || | || |||| | || | || |||||||| || || ||
Sbjct 506 ATC-GCATTTGGTGGT--ATGCTTCAGGCTTTAACCAAATCCCTTACATTATAAACCCAA 562
Query 556 TTCTTAGCCACGTCGTCGCTTGCACTCTCCAGCTATCTTCTTGGCTTTACCGTACCTCTT 615
|| ||||| ||| | || ||||| |||||||| ||||||||||| |||||||| ||
Sbjct 563 CGCTGAGCCATGTCTTAGCCTGCACACTCCAGCTCTCTTCTTGGCTCTACCGTACATCAC 622
Query 616 TATTCATCATTGTC-TGCATTCTCTA-CAAAATCA-CATGTCATCTTCA-GACTCTTCGT 671
| |||||||||| | || || ||||| ||||| || | || || || || | | || |||
Sbjct 623 TCTTCATCATTG-CTTGTATCCTCTACCAAAA-CATC-TGCCACCTCCAGGTC-CTCCGT 678
Query 672 CTCGATGATTTCGCTCGCTGCTTCGCTTCTGAAATCACTGACGTTC-GCT-CAGCT-CTC 728
|| ||||| ||||| ||||||||||| ||||| |||| || ||| | | || | |||
Sbjct 679 CTTGATGAATTCGCACGCTGCTTCGCCTCTGAGATCAAAGA-TTTCAGTTCCA--TACTC 735
Query 729 GGCGAGCATC-AAAAGATCCGTCGT-AATTTGAGGATTGTTAGTCATCGGTTCAGGA-GA 785
| |||||||| ||| ||||||||| || ||| |||||| ||||| ||||||| || ||
Sbjct 736 GCCGAGCATCTCAAA-ATCCGTCGTGAA-CTGAAGATTGTCAGTCACCGGTTCA-GACGA 792
Query 786 TTTATTCTTTTGTCTTTGATTCTT-GTTACTGCTACTCAGTTCATGGCTTTGCTTACTAC 844
|| ||||||||||| ||| || || || ||||| |||||||||||||| ||||| |||||
Sbjct 793 TTCATTCTTTTGTCATTG-TTTTTCGTCACTGCCACTCAGTTCATGGCATTGCTGACTAC 851
Query 845 TA-CGAGAGCTAGTGTT-GCTGTTAATATCTATGAAGTTGGCGAGCTCGCGTTATG-TTC 901
| | |||||||||||| || |||||||||| ||||||||||||||||||||||| | |
Sbjct 852 CATC-AGAGCTAGTGTTCCCT-TTAATATCTACGAAGTTGGCGAGCTCGCGTTATGCTCC 909
Query 902 ATTGAGTTTGGT-TACAGGAGTATTCATATGTTTGAGAAGTGCAACGA-AGATAACTCAC 959
| || ||||| | ||||| |||||||||| |||| ||||||||| | | || ||||||
Sbjct 910 A-CAAGCTTGGTGT-CAGGACTATTCATATGCTTGAAAAGTGCAAC-ACAAATGACTCAC 966
Query 960 AAAGCTCAATCTGTAACCAGCCTTG-CAGCTAAA-TGGAACGTTTGCGCCACAGTT-GAC 1016
||||||||||| ||||| ||| | | || | ||| |||||||| ||||| | || ||
Sbjct 967 AAAGCTCAATCAGTAACGAGCATCGCCA-C-AAAGTGGAACGTGTGCGCGTC-TTTAGA- 1022
Query 1017 T-CGTTCGATCATCTTGATGGC-GA-A-ACTCCT-ACTGGTTCC-ATGA-T---TGA-A- 1064
| | || ||| |||| ||| | || | |||||| | | | ||| | | | | |
Sbjct 1023 TACATTTGATGTTCTTTATGACGGAGAGACTCCTAAAT-G-TCCAACAACTACACAACAT 1080
Query 1065 TCTCA-AGTTT-CCCCAT-GTGGCAATG-CGATGGATACGTC---TGATGATGAAGAAGG 1117
|| || | ||| | | | || | |||| | | || |||| |||||||||||||||
Sbjct 1081 TCCCAGATTTTATCGCGTCGTCGTAATGTTGTTCAAT-CGTCTGATGATGATGAAGAAGG 1139
Query 1118 AGAAGGAGATGACGATCTTGATAATACCAAGATACATCCGAT-TTACGCCAATACAATTT 1176
||||||||||||| || ||| | | ||||||||| || || ||| | ||||
Sbjct 1140 AGAAGGAGATGACAAT---GATCTTG--A-GATACATCCAATCTTT-GCCCGCGCCATTT 1192
Query 1177 CTTAC-CAAAAACGTCAAGCTCTAGTGACGTATTTAGAGAACAACAAAGCTGGGATCACT 1235
||| | || |||||||||||||||||||| ||| |||||||||||| ||| |||||||||
Sbjct 1193 CTT-CTCAGAAACGTCAAGCTCTAGTGACCTATCTAGAGAACAACAGAGCAGGGATCACT 1251
Query 1236 GTGTATGGCTTCCTTG-TAGATAGGTCATGGTTGCATACGATTTTCGGCATTGAACTCGC 1294
|| || || ||| ||| | |||| ||||||||| || ||| ||| |||| ||||| ||
Sbjct 1252 GTTTACGGATTC-TTGGTGGATAAAACATGGTTGCGTATGATCTTCAGCATCGAACTTGC 1310
Query 1295 TCTTCTACTATGGTTGCTCAATAAA-ACAATC 1325
|||||| |||||| ||||||| ||| ||||||
Sbjct 1311 TCTTCTTCTATGGCTGCTCAA-AAAGACAATC 1341
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75602020770
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5