BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492640
Length=1345
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22260.1 | Symbols: IM, IM1 | Alternative oxidase family pro... 1964 0.0
> AT4G22260.1 | Symbols: IM, IM1 | Alternative oxidase family protein
| chr4:11769754-11772516 REVERSE LENGTH=1435
Length=1435
Score = 1964 bits (1063), Expect = 0.0
Identities = 1256/1347 (93%), Gaps = 22/1347 (2%)
Strand=Plus/Plus
Query 1 GCGTCGACGTCGATGGGCATGAGAAGTAGCGGAGAATCCTCTCACATTGGGATTCGTCGT 60
||||||||||||||||| ||||||||||| ||||||||| |||||||||||| | ||||
Sbjct 1 GCGTCGACGTCGATGGGGATGAGAAGTAGTGGAGAATCCGCTCACATTGGGA-T--TCGT 57
Query 61 CATTCTTCGTCTAAAACCCACAAAATCCCCAAAATATCTCCATTTCTACGAAAAATCTTC 120
|||||||| |||||||||| |||||| | ||||||||||||| |||||| | |
Sbjct 58 CATTCTTCTTCTAAAACCCGCAAAAT--------T-TCTCCATTTCTACCAAAAATATCC 108
Query 121 AACCTTTACTTTTCTTTCCTGTGAAATT-TCTGCTCAAAATCTTGGGTTCCTGACGGCGA 179
||| |||||||||||||||||||||||| ||||||| ||||||| |||||||||||| ||
Sbjct 109 AACTTTTACTTTTCTTTCCTGTGAAATTATCTGCTC-AAATCTTTGGTTCCTGACGGAGA 167
Query 180 TGGCGGCGATTTCAGGCATCTCCTCTGGTACGTTGACGATTTCACGACCTTTGGTTACTC 239
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 168 TGGCGGCGATTTCAGGCATCTCCTCTGGTACGTTGACGATTTCACGGCCTTTGGTTACTC 227
Query 240 TTCGACGCTCTAGAGCCGCCGTTTCGTACAGCTCCTCTCACCGATTGCTTCATCATCGTC 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 228 TTCGACGCTCTAGAGCCGCCGTTTCGTACAGCTCCTCTCACCGATTGCTTCATCATCTTC 287
Query 300 CTCTCTCTTCTCGTCGTCTGCTCTTTAGGAACATTGATCGAGTACAAGCAACGATTTTGC 359
|||||||||||||||||||||| || ||||||| | ||||||| ||||||||||||||||
Sbjct 288 CTCTCTCTTCTCGTCGTCTGCTATTAAGGAACAATCATCGAGTCCAAGCAACGATTTTGC 347
Query 360 AAGATGATGAAGAGAAAGTGGTGGTGGAGGAATCATTTAAAGCTGAGACTTTTACTGGTA 419
|||| ||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||
Sbjct 348 AAGACGATGAAGAGAAAGTGGTGGTGGAGGAATCGTTTAAAGCCGAGACTTCTACTGGTA 407
Query 420 AAGAACCACTTGAGGAGCCAAATATGAGTTCTTCTTCAAGTAGTGCTTTTGAGTCATGGA 479
|||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 408 CAGAACCACTTGAGGAGCCAAATATGAGTTCTTCTTCAACTAGTGCTTTTGAGACATGGA 467
Query 480 TCATCAAGCTTGAGCAAGGAGTGAATGTCTTCCTCACAGACTCGGTGATAAAGATACTTG 539
|||||||||||||||||||||||||||| ||||| ||||||||||| || ||||||||||
Sbjct 468 TCATCAAGCTTGAGCAAGGAGTGAATGTTTTCCTTACAGACTCGGTTATTAAGATACTTG 527
Query 540 ACACATTGTACCGTGACAGAACCTATGCAAGGTTCTTTGTTCTTGAGACAATTGCTAGAG 599
|||| ||||| |||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 528 ACACTTTGTATCGTGACCGAACATATGCAAGGTTCTTTGTTCTTGAGACAATTGCTAGAG 587
Query 600 TTCCTTATTTTGCCTTTATGTCTGTGCTCCATATGTATGAGACCTTTGGTTGGTGGAGGA 659
| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 588 TGCCTTATTTTGCGTTTATGTCTGTGCTACATATGTATGAGACCTTTGGTTGGTGGAGGA 647
Query 660 GAGCAGATTATTTGAAAGTACATTTTGCTGAGAGCTGGAATGAGATGCATCACTTGCTCA 719
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 648 GAGCAGATTATTTGAAAGTACACTTTGCTGAGAGCTGGAATGAAATGCATCACTTGCTCA 707
Query 720 TAATGGAAGAATTGGGTGGAAACTCTTGGTGGTTTGATCGTTTTCTGGCCCAGCACATAG 779
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 708 TAATGGAAGAATTGGGTGGAAATTCTTGGTGGTTTGATCGTTTTCTGGCTCAGCACATAG 767
Query 780 CAACCTTCTACTACTTCATGACAGTGTTCTTGTATATCTTAAGCCCTAGAATGGCATATC 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 CAACCTTCTACTACTTCATGACAGTGTTCTTGTATATCTTAAGCCCTAGAATGGCATATC 827
Query 840 ACTTTTCAGAATGCGTGGAGAGTCATGCATTTGAGACTTATGATAAATTTCTCAAGGCCA 899
||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 828 ACTTTTCGGAATGTGTGGAGAGTCATGCATATGAGACTTATGATAAATTTCTCAAGGCCA 887
Query 900 GTGGAGAGGAATTGAAGAATATGCCTGCACCCGATATCGCAGTAAAATATTATACCGGAA 959
|||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct 888 GTGGAGAGGAGTTGAAGAATATGCCTGCACCGGATATCGCAGTAAAATACTATACGGGAG 947
Query 960 GTGACTTGTACTTATTTGATGAGTTCCAAACATCCAGAGCTCCCAATACTCGAAGGCCAA 1019
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||
Sbjct 948 GTGACTTGTACTTATTTGATGAGTTCCAAACATCAAGAACTCCCAATACTCGAAGACCAG 1007
Query 1020 TAATAGAGAATCTATACGATGTGTTTGTGAACATAAGAGACGATGAAGCAGAACACTGCA 1079
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1008 TAATAGAAAATCTATACGATGTGTTTGTGAACATAAGAGATGATGAAGCAGAACACTGCA 1067
Query 1080 AGACAATGAGAGCTTGTCAGACTCTGGGCAGTCTACGTTCTCCACATTCCATTTTAGAAG 1139
||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||
Sbjct 1068 AGACAATGAGAGCTTGTCAGACTCTAGGCAGTCTGCGTTCTCCACACTCCATTTTAGAAG 1127
Query 1140 ATGGTGATGGAGAAGGAGAATCAGGCTGTGTTGTTCCTGAGGCGGCTCATTGCGAAGGTA 1199
||| |||| |||| ||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 1128 ATGATGATACTGAAGAAGAATCAGGGTGTGTTGTTCCTGAGGAGGCTCATTGCGAAGGTA 1187
Query 1200 TTGTAGACTGCATCAAGAAATCCATTACAAGTTAAAATTAATAAATTAGAAAGTAAACTA 1259
||||||||||| ||||||||||||||||||||||| | || | |||||||||||||||
Sbjct 1188 TTGTAGACTGCCTCAAGAAATCCATTACAAGTTAA--T-AA-A--TTAGAAAGTAAACTA 1241
Query 1260 AAAA-GATTAATTGTATCAGCTCATGAAGAATAGATATGAATCCCATATACTTTGGAACA 1318
|||| ||||| ||||||||||||||||| ||||||||| |||||||||||||| |||| |
Sbjct 1242 AAAAAGATTATTTGTATCAGCTCATGAACAATAGATAT-AATCCCATATACTTGGGAATA 1300
Query 1319 AAGGAATAATGTGAAATTCCCATCGTT 1345
|||||||||||||||||||||||||||
Sbjct 1301 AAGGAATAATGTGAAATTCCCATCGTT 1327
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66214518855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5