BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492641
Length=940
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22250.1 | Symbols: | RING/U-box superfamily protein | chr4... 1448 0.0
AT4G03965.1 | Symbols: | RING/U-box superfamily protein | chr4... 255 4e-67
> AT4G22250.1 | Symbols: | RING/U-box superfamily protein | chr4:11767513-11768452
REVERSE LENGTH=940
Length=940
Score = 1448 bits (784), Expect = 0.0
Identities = 896/948 (95%), Gaps = 16/948 (2%)
Strand=Plus/Plus
Query 1 AGATCTAAACAGTTTCTCTCTATATTTCTC---TCTCTCACATGGCGGAGCTAATCTGTC 57
||||||||||||||||||||| | || | ||||| ||||||||||||||||||||
Sbjct 1 AGATCTAAACAGTTTCTCTCTCTCCCTCACAGGGCTCTCTCATGGCGGAGCTAATCTGTC 60
Query 58 TATTTCACTGGTGATTCTGTTTCACTATCGGAGAATTTCTTTAAGAGTTTCCGTTACCGA 117
||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||
Sbjct 61 TATTTCACTGGTGATTCTGTTTCACTATCTGAGAATTTGTTT-AGAGTTTCCGTTACCGA 119
Query 118 GTCGATGATGAGTGAACTCGAGCTCGGAACGAGTCAGAGGATGGCGGAGACACACCGCAC 177
||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||
Sbjct 120 GTCGATGATGAGTGAACTCGATCTCGGAACGAGTCAGAGGATGACGGAAACACACCGCAC 179
Query 178 AACGACGACGTTTCTTGATTTACTCCGACGACAGATGAGCGGTCACGATCTCACCAGAAG 237
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 180 GACGACGACGTTTCTTGATTTGCTCCGACGACAGATGAGCGGTCACGATCTCACCAGAAG 239
Query 238 GAAACGGACTTTAAAAGAACGGTTGAGATTCAAATGCATCGGATGCTGTGGTCCAACCTG 297
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GAAACGGACGTTAAAAGAACGGTTGAGATTCAAATGCATCGGATGCTGTGGTCCAACCTG 299
Query 298 GAGTCTCCGTCTAACTAACAACACCACCACTCTTCACAGTCCAAGCTCAAGAGACGACGA 357
|| |||||||||||||||| | | |||||||||||||||||||| |||||||||||||||
Sbjct 300 GAATCTCCGTCTAACTAAC-A-A-CACCACTCTTCACAGTCCAACCTCAAGAGACGACGA 356
Query 358 AATCGAAGAATTACAAATTGAAACCGGACTCGTTCCCGAATCGGATCATGGATCGGGTAC 417
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 357 AATCGAAGAGTTACAAATTGAAACCGGACTCGTTCTCGAATCGGATCATGGATCGGGTAC 416
Query 418 GGGTATGAATCTCGCGACTGCGTTAGAGGCGGAGAGGTATAACAGAGGAGAATCGACGGA 477
|||||||||||||||||| |||||||| ||||||||||||||| | ||||||||||||||
Sbjct 417 GGGTATGAATCTCGCGACAGCGTTAGAAGCGGAGAGGTATAACCGTGGAGAATCGACGGA 476
Query 478 GGCGGAGGTAGATATGACGCCGAGGAGAGTTTCGTTGATGAGATTGTTGGAAGAGACGGC 537
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 GGCGGAGGCAGATATGACGCCGAGGAGAGTTTCGTTGATGAGATTGTTGGAAGAGACGGC 536
Query 538 GGAGAGAATCGTTGATGAAGACGGAAAAGAAACGGAGATATTAACGGCGTCTATTGGGAC 597
||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 537 GGAGAAAATCGTTGATGACGACGGGAAAGAAACGGAGATATTAACGGCGTCTATTGGGAC 596
Query 598 GTTAACGGGTAATGATTCGGTGTGTTGCGTGTGTATGGGAAGAAAGAAAGGTGCAGCGTT 657
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 597 GTTAACGGGTAATGATTCGGTGTGTTGCGTGTGTATGGGAAGAAAGAAAGGCGCTGCGTT 656
Query 658 TATTCCATGTGGTCATACTTTTTGCAGAGTGTGCTCTAGAGAATTGTGGCTGAACCGTGG 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 TATTCCATGTGGTCATACTTTTTGCAGAGTGTGCTCTAGAGAATTGTGGCTGAACCGTGG 716
Query 718 ATCGTGTCCTCTTTGTAACCGTCCGATCATTGAGATACTAGATATCTTT-TGAAAACGAT 776
||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||
Sbjct 717 ATCGTGTCCTCTTTGTAACCGTCCGATCATTGAGATACTCGATAT-TTTCTGAAAACGAT 775
Query 777 CGGACGGCTAAAAGTCCTCGATCCAAGTGAGTAAGTGAGGTGATCCCTAGATACGTT-CC 835
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 776 CGGACGGCTAAAAGTTCTCGATCCACGTGAGTAAGTGAGGTGATCCCTAGATACGTTTCC 835
Query 836 AAA-TTTTAACTACGGTTTGTGTACTTTGTACGTTTCTTTTGGTTAATG--GAAGATGAT 892
||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 836 AAAGTTTTAACTACGGTTTGTGTACTTTGTACGTTTCTTTTGGTTATTGAAGAAGATGAT 895
Query 893 GTAAATGCaaaaaaaaaaaaTACAAGAGGTTTTTTGTCCACAAGGCCC 940
|||||||||||||| || ||||||||||||||||| ||| ||||||
Sbjct 896 GTAAATGCAAAAAAGAA---TACAAGAGGTTTTTTGTTCACGAGGCCC 940
> AT4G03965.1 | Symbols: | RING/U-box superfamily protein | chr4:1889473-1890412
FORWARD LENGTH=940
Length=940
Score = 255 bits (138), Expect = 4e-67
Identities = 333/422 (79%), Gaps = 33/422 (8%)
Strand=Plus/Plus
Query 419 GGTATGAATCTCGCGACTGCGTTAG-AGGCGGAGAGGTATAACAG-A-GGA-GAATCGAC 474
|||||||||||||| || ||||||| | |||||||| || || | | ||| ||| ||
Sbjct 377 GGTATGAATCTCGCAACGGCGTTAGCA-GCGGAGAGAAATTACCGAACGGAGGAA---AC 432
Query 475 GGAGGC-GGAGGTAGATATGACGCCGAGGAGAGTTTCGTTGATGAGATTGTTGGAAGAGA 533
||| || ||| || | | |||||| | ||| ||||| ||||||||| | ||||| |
Sbjct 433 GGAAGCATCAGGGAG-TTTAACGCCGTTAAAAGTGTCGTTAATGAGATTGCTCGAAGAAA 491
Query 534 CGGCGGAGAGAATCGTTGATGAAGACGGAAAAGAAACGGAGATATTAACGGCGTC--TAT 591
||||||||||| |||| | |||||| | || |||||||||| | |||||||||| |
Sbjct 492 CGGCGGAGAGAGTCGTCGTTGAAGA--G-AATGAAACGGAGAGAGTAACGGCGTCGGCGT 548
Query 592 TG-GGAC-GTTA-ACGG-G----TAATGATTCGGTGTGTTGCGTGTGTATGGGAAGAAAG 643
| ||| |||| | || | |||||||||||||||||||||||| |||||||| |||
Sbjct 549 CGTCGACGGTTAGA-GGAGTTAATAATGATTCGGTGTGTTGCGTGTGCATGGGAAGGAAG 607
Query 644 AAAGGTGCAGCGTTTATTCCATGTGGTCATACTTTTTGCAGAGTGTGCTCTAGAGAATTG 703
||||| ||||||||||| |||||||| |||||||||||||||||||| ||| |||| ||
Sbjct 608 AAAGGAGCAGCGTTTATCCCATGTGGACATACTTTTTGCAGAGTGTGTTCTCGAGAGGTG 667
Query 704 TGGCTGAACCGTGGATCGTGTCCTCTTTGTAACCGTCCGATCATTGAGATACTAGATATC 763
||||| || || |||||||||||||||||||||||||||||||| ||||| || || ||
Sbjct 668 TGGCTTAATCGAGGATCGTGTCCTCTTTGTAACCGTCCGATCATCGAGATCCTCGACAT- 726
Query 764 TT-TTGAAAAC-GA-TCGGACGGCT-AAA--AGTCCTCGATCCAAGTGAGTA-AGTGAGG 816
|| |||| || || || |||||| ||| ||||| | | || |||||| |||||||
Sbjct 727 TTATTGATTACTGAATCCTACGGCTCAAATTAGTCCG-GTTGCACGTGAGTTCAGTGAGG 785
Query 817 TG 818
||
Sbjct 786 TG 787
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45964244505
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5