BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg492644

Length=304
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G22217.1 | Symbols:  | Arabidopsis defensin-like protein | c...   436    4e-122


> AT4G22217.1 | Symbols:  | Arabidopsis defensin-like protein | 
chr4:11758608-11759072 FORWARD LENGTH=387
Length=387

 Score =  436 bits (236),  Expect = 4e-122
 Identities = 282/304 (93%), Gaps = 3/304 (1%)
 Strand=Plus/Plus

Query  1    ACAAAGAGAGATCAGCAATGAGGAGCTTGAAGTTGAGAACAGTTTTTGTTGCTGCAATAG  60
            |||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||
Sbjct  1    ACAAAGAGAGATCAGCAATGAGGAGCTTGAGGTTGAGAACAGTTGTTGTTGCTACAATAG  60

Query  61   TCGTTTGTCTCTCTATCCTCTTCCTATCTCCCACTGAAGTGGAGGGAAGCTGTGACTTCC  120
            |||||||||| ||  | | | ||||||||||||| |||||||| ||||||||||||||||
Sbjct  61   TCGTTTGTCTATCGGT-C-C-TCCTATCTCCCACCGAAGTGGATGGAAGCTGTGACTTCC  117

Query  121  CATTTGGTGCGTGTACCCCTTTCCGTGATTGCAAGGAGAGTTGCATCAAGTTCAAAACGA  180
            |||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  118  CATTAGGTGCTTGTACTCCTTTCCGTGATTGCAAGGAGAGTTGCATCAAGTTCAAAACGA  177

Query  181  GGGCTGGACAGACtttttttGATGGCAAGTGCCGTCCGAGGGATAGACCAAGTGTGTGGA  240
            ||||||||||||||||||||||||||||||||||||| |||||||| || || |||||||
Sbjct  178  GGGCTGGACAGACTTTTTTTGATGGCAAGTGCCGTCCAAGGGATAGGCCGAGCGTGTGGA  237

Query  241  CGGCTTGCTTCTGCTGCTATTATGATAGTATCGGTGCTCAATAAGAAAGCATGCGATTCC  300
            ||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct  238  CGGCTTGTTTCTGCTGCTATTATGATAGTATCGGTGCTCAATAAGAAAACATGTGATTCC  297

Query  301  AAAA  304
             |||
Sbjct  298  GAAA  301



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14074969720


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5