BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492645
Length=3038
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22200.1 | Symbols: AKT2/3, AKT3, AKT2, KT2/3 | potassium tr... 4434 0.0
> AT4G22200.1 | Symbols: AKT2/3, AKT3, AKT2, KT2/3 | potassium
transport 2/3 | chr4:11746513-11750698 REVERSE LENGTH=3169
Length=3169
Score = 4434 bits (2401), Expect = 0.0
Identities = 2738/2895 (95%), Gaps = 45/2895 (2%)
Strand=Plus/Plus
Query 170 TTCTCAATAGAGTTTAAAGTTGTTAATGGAGAGTTTACATTGGGACCCTTAAGGCTACTA 229
|||||||||||||||||| |||||||||||||| || ||||||||||| |||||| |||
Sbjct 218 TTCTCAATAGAGTTTAAATTTGTTAATGGAGAG-ATATATTGGGACCCTCAAGGCTTCTA 276
Query 230 A-T-TGCCACGTTTGGCATATACTTCTCT-T-ATTGGGGGCCACATCTTTCACACTTCAT 285
| | | |||||||||||||| | |||||| | || ||||||||||||||||||||||||
Sbjct 277 ATTATACCACGTTTGGCATA-A-TTCTCTATCGTTTGGGGCCACATCTTTCACACTTCAT 334
Query 286 TACCTTATCGCCAAAACAT-AAATCAATCAA-TTTTCTTTTTCCTTATTGATTGTGTTGG 343
||||||||| ||||||||| ||||||||||| |||| |||| ||||||||||||||||||
Sbjct 335 TACCTTATCACCAAAACATAAAATCAATCAACTTTT-TTTTGCCTTATTGATTGTGTTGG 393
Query 344 ATCCCTCCAAAATTAAAACTTGTGTTCCCCACAAAAGCTTACCCAATTTCACTTCAATCT 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 394 ATCCCTCCAAAATTAAAACTTGTGTTCCCCACAAAAGCTTACCCAATTTCACTTCAATCT 453
Query 404 TAACAAATAGGACCACCACCACCACGTACGGTTTGCATCATACAAACCACAAACTCCTTC 463
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 454 TAACAAATAGGACCACCACTACCACGTACGGTTTGCATCATACAAACCACAAACTCCTTC 513
Query 464 TTCATTGCAATTATTATATCATCTACTAAAA---C---CT--CTCTCTCTTTCTTGTTCT 515
|||||| |||||||||||||||||||||||| | || ||||||||||||||||||
Sbjct 514 TTCATTACAATTATTATATCATCTACTAAAACCTCTTTCTCCCTCTCTCTTTCTTGTTCT 573
Query 516 TAGTGCTAACTTTTCTTTGTTCAGGAGAAATATAATGGAGCTCAAGTATGCAGCATCTCA 575
||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 574 TAGTGCTAAATTTTCTTTGTTCAGGAGAAATATAATGGACCTCAAGTATTCAGCATCTCA 633
Query 576 CTGCAACTTATCCTCAGACATGAAGCTCCGGCGTCTTCATCAGCATCGAGGAAAAGGGAG 635
||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||
Sbjct 634 TTGCAACTTATCCTCAGACATGAAGCTCAGGCGTTTTCATCAGCATCGAGGAAAAGGAAG 693
Query 636 AGAAGAAGAGTACGATGCTTCTTCTCTCAGCTTGAACAATCTGTCAAAACTTATTCTTCC 695
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 694 AGAAGAAGAGTATGATGCTTCTTCTCTCAGCTTGAACAATCTGTCAAAACTTATTCTTCC 753
Query 696 TCCACTTGGTGTTGCAAGCTATAACCAGAATCACATCAGGTCTAGTGGATGGATCATCTC 755
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 754 TCCACTTGGTGTTGCTAGCTATAACCAGAATCACATCAGGTCTAGTGGATGGATCATCTC 813
Query 756 ACCCATGGACTCAAGATACAGGTGCTGGGAATTTTATATGGTGCTTTTAGTAGCATACTC 815
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 814 ACCTATGGACTCAAGATACAGGTGCTGGGAATTTTATATGGTGCTTTTAGTGGCATACTC 873
Query 816 TGCGTGGGTTTATCCC-TTTGAAGTTGCATTTCTGAATTCATCACCAAAGAGGAATCTTT 874
|||||||||||| ||| ||||||||||||||||||||||||||||||||||| || ||||
Sbjct 874 TGCGTGGGTTTA-CCCTTTTGAAGTTGCATTTCTGAATTCATCACCAAAGAGAAACCTTT 932
Query 875 GTATCGCGGACAACATCGTAGACTTGTTCTTTGCGGTTGACATTTTCTTGACGTTTTTCG 934
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 933 GTATCGCGGACAACATCGTAGACTTGTTCTTCGCGGTTGACATTGTCTTGACGTTTTTCG 992
Query 935 TTGCTTACATAGACCAAAGAACACAGCTTCTTGTCCGTGAACCTAAACAGATTGCAGTGA 994
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 993 TTGCTTACATAGACGAAAGAACACAGCTTCTTGTCCGTGAACCTAAACAGATTGCAGTGA 1052
Query 995 GGTACCTTTCAACATGGTTCTTGATGGATGTTGCATCAACTATACCATTTGACGCAATTG 1054
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1053 GGTACCTATCAACATGGTTCTTGATGGATGTTGCATCAACTATACCATTTGACGCTATTG 1112
Query 1055 GATACTTAATCACTGGCACATCCAAGTTGAATCTCACTTGTAATCTCTTGGGATTGCTTA 1114
|||||||||||||||||||||||| ||| ||| |||||||||||||||||||||| ||||
Sbjct 1113 GATACTTAATCACTGGCACATCCACGTTAAATATCACTTGTAATCTCTTGGGATTACTTA 1172
Query 1115 GATTTTGGCGACTTCGACGCGTCAAACACCTCTTCACTAGACTCGAGAAGGACATAAGAT 1174
||||||||||||||||| | || ||||||||||||||||| |||||||||||||||||||
Sbjct 1173 GATTTTGGCGACTTCGAAGAGTTAAACACCTCTTCACTAGGCTCGAGAAGGACATAAGAT 1232
Query 1175 ACAGCTACTTCTGGATTCGCTGCCTTCGACTTCTATCCGTGACATTGTTTCTAGTGCATT 1234
| ||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||| |
Sbjct 1233 ATAGCTATTTCTGGATTCGCTGCTTTCGACTTCTATCAGTGACATTGTTTCTAGTGCACT 1292
Query 1235 GTGCTGGATGCAGCTATTACCTAATAGCAGACAGATATCCACACGAAGGAAAGACATGGA 1294
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1293 GTGCTGGATGCAGTTATTACCTAATAGCAGACAGATATCCACACCAAGGAAAGACATGGA 1352
Query 1295 CTGACGCGATCCCGAATTTCACTGAGACAAGTCTTTCCATCAGATACATTGCAGCTATAT 1354
|||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1353 CTGATGCGATCCCTAATTTCACAGAGACAAGTCTTTCCATCAGATACATTGCAGCTATAT 1412
Query 1355 ATTGGTCTATCACAACAATGACCACTGTGGGATATGGAGATCTCCATGCAAGCAACACTA 1414
||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1413 ATTGGTCTATCACTACAATGACCACAGTGGGATATGGAGATCTTCATGCAAGCAACACTA 1472
Query 1415 TTGAAATGGTATTCATTACAGTCTACATGTTATTCAATCTTGGCCTCACCGCTTACCTTA 1474
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1473 TTGAAATGGTATTCATAACAGTCTACATGTTATTCAATCTTGGCCTCACTGCTTACCTTA 1532
Query 1475 TTGGTAACATGACTAATTTGGTCGTGGAAGGGACTCGTCGTACCATGGAATTTAGGAATA 1534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1533 TTGGTAACATGACTAATTTGGTCGTGGAAGGGACTCGTCGTACCATGGAATTTAGGAATA 1592
Query 1535 GCATTGAAGCAGCGTCAAACTTTGTTAACAGAAACAGATTGCCTCCTAGATTAAAAGACC 1594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1593 GCATTGAAGCAGCGTCAAACTTTGTTAACAGAAACAGATTGCCTCCTAGATTAAAAGACC 1652
Query 1595 AGATATTGGCTTACATGTGTTTAAGGTTTAAAGCAGAGAGCTTAAATCAGCAACATCTTA 1654
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1653 AGATATTAGCTTACATGTGTTTAAGGTTTAAAGCAGAGAGCTTAAATCAGCAACATCTTA 1712
Query 1655 TTGACCAGCTCCCAAAATCTATCTACAAAAGCATTTGTCAACATCTTTTTCTTCCATCTG 1714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1713 TTGACCAGCTCCCAAAATCTATCTACAAAAGCATTTGTCAACATCTTTTTCTTCCATCTG 1772
Query 1715 TGGAAAAAGTTTACCTCTTCAGAGGCGTCTCAAGAGAAATACTTCTTCTTCTGGTTTCAA 1774
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1773 TTGAAAAAGTTTACCTCTTCAAAGGCGTCTCAAGAGAAATACTTCTTCTTCTGGTTTCAA 1832
Query 1775 AAATGAAGGCTGAGTATATACCACCAAGAGAGGATGTCATTATGCAGAACGAAGCGCCCG 1834
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1833 AAATGAAGGCTGAGTATATACCACCAAGAGAGGATGTCATTATGCAGAACGAAGCGCCGG 1892
Query 1835 ATGATGTTTACATAATTGTATCAGGAGAAGTTGAGATCATTGATTCAGAGATGGAGAGAG 1894
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1893 ATGATGTTTACATAATTGTGTCAGGAGAAGTTGAGATCATTGATTCAGAGATGGAGAGAG 1952
Query 1895 AGTCTGTTTTAGGCACTCTACGTTGTGGAGACATATTTGGAGAAGTTGGAGCACTTTGTT 1954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1953 AGTCTGTTTTAGGCACTCTACGTTGTGGAGACATATTTGGAGAAGTTGGAGCACTTTGTT 2012
Query 1955 GCAGACCTCAGAGCTACACTTTTCAAACTAAGTCTCTGTCACAGCTTCTCCGACTCAAAA 2014
||||||| || |||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 2013 GCAGACCACAAAGCTACACTTTTCAAACTAAGTCTTTATCACAGCTTCTCCGACTCAAAA 2072
Query 2015 CATCTTTCCTTATTGAGACAATGCAGATTAAACAACAAGACAATGCCACAATGCTCAAGA 2074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073 CATCTTTCCTTATTGAGACAATGCAGATTAAACAACAAGACAATGCCACAATGCTCAAGA 2132
Query 2075 ACTTCTTGCAGCATCACAAAAAGCTGAGTGATTTAGACATTGGTGATCTAA-GGACACAA 2133
||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||
Sbjct 2133 ACTTCTTGCAGCATCACAAAAAGCTGAGTAATTTAGACATTGGTGATCTAAAGG-CACAA 2191
Query 2134 CAAAATGGCGAAAACAACGGTTTTGTTCCCCCGAACATTGCCTCAAATCTCATCGCTGTT 2193
|||||||||||||||| || | ||||||| || ||||||||||||||||||||||||||
Sbjct 2192 CAAAATGGCGAAAACACCGATGTTGTTCCTCCTAACATTGCCTCAAATCTCATCGCTGTG 2251
Query 2194 GTGACCACAGGCAATGCAGCTCTTCTTGATGAGCTCCTTAAGGCAAAGTTAAGCCCTGAC 2253
||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 2252 GTGACTACAGGCAATGCAGCTCTTCTTGATGAGCTACTTAAGGCTAAGTTAAGCCCTGAC 2311
Query 2254 ATTACAGATTCTAAAGGAAAAACTCCATTGCATATAGCAGCCTCAAGAGGGTATGAAGAT 2313
||||||||||| ||||||||||||||||||||| ||||||| || ||||| |||||||||
Sbjct 2312 ATTACAGATTCCAAAGGAAAAACTCCATTGCATGTAGCAGCTTCTAGAGGATATGAAGAT 2371
Query 2314 TGTGTTTTAGTACTCTTAAAGCACGGATGCAACATCCACATAAGAGATGTGAATGGTAAC 2373
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2372 TGTGTTTTAGTACTCTTAAAGCACGGTTGCAACATCCACATAAGAGATGTGAATGGTAAT 2431
Query 2374 ACTGCTCTATGGGAAGCAATC-TCATCAAAGCATTACGCGATATTCAGAATCCTTTATCA 2432
| |||||||||||||||||| | ||| |||||||||| |||||||||||||||||||||
Sbjct 2432 AGTGCTCTATGGGAAGCAATAAT-ATCGAAGCATTACGAGATATTCAGAATCCTTTATCA 2490
Query 2433 TTTCGCTGCTATATCGGATCCACACATAGCTGGAGATCTTCTATGTGAAGCAGTGAAACA 2492
|||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2491 TTTCGCAGCCATATCGGATCCACACATAGCTGGAGATCTTCTATGTGAAGCAGCGAAACA 2550
Query 2493 GAACAATGTAGAAGTAATGAAGGCTCTTTTAAAACAGGGGCTTAACGTCGACACAGAGGA 2552
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2551 GAACAATGTAGAAGTCATGAAGGCTCTTTTAAAACAGGGGCTTAACGTCGACACAGAGGA 2610
Query 2553 CCACCAGGGCGTCACCGCGTTGCAGGTCGCTATGGCACAGGATCAAATGGACATGGTGAA 2612
||||| |||||||| || || |||||||||||||| ||||||| ||||||||||||||
Sbjct 2611 TCACCATGGCGTCACAGCTTTACAGGTCGCTATGGCGGAGGATCAGATGGACATGGTGAA 2670
Query 2613 TCTGCTGGCGATGAACGGTGCAGATGTAGTTGGTATGAATACACATGATGAGTTCACACC 2672
||| ||||||| ||||||||||||||||||| || ||||||||||| |||| ||||||||
Sbjct 2671 TCTCCTGGCGACGAACGGTGCAGATGTAGTTTGTGTGAATACACATAATGAATTCACACC 2730
Query 2673 ATTGGAGAAGCTAAGAGTTGTGGAAGAAGAAGAAGAA------CGAGGAAGAGTGAGTAT 2726
|||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2731 ATTGGAGAAGTTAAGAGTTGTGGAAGAAGAAGAAGAAGAAGAACGAGGAAGAGTGAGTAT 2790
Query 2727 ATACAGAGGTCATCCATTGGAGAGGAGAGAAAGAGGTTGCAATGAAGCTGGGAAGCTTAT 2786
|||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2791 TTACAGAGGACATCCATTGGAGAGGAGAGAAAGAAGTTGCAATGAAGCTGGGAAGCTTAT 2850
Query 2787 TCTTCTTCCTCCTTCACTTGATGATCTCAAGAAAATTGCAGGAGAGAAGTTTGGGTTTGA 2846
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2851 TCTTCTTCCTCCTTCACTTGATGACCTCAAGAAAATTGCAGGAGAGAAGTTTGGGTTTGA 2910
Query 2847 TGGAAGTGATGAGACGATGGTGACGAATGAAGATGGAGCTGAGATTGACAGTATTGAAGT 2906
||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2911 TGGAAGTGA-GA--CGATGGTGACGAATGAAGATGGAGCTGAGATTGACAGTATTGAAGT 2967
Query 2907 GATTAGAGATAATGACAAACTATACTTTGTCG-AGAACGAA-ATAATTTAGAACTTGAAA 2964
||||||||||||||||||||| |||||||||| | ||| || ||||||||||| ||||||
Sbjct 2968 GATTAGAGATAATGACAAACTCTACTTTGTCGTA-AAC-AAGATAATTTAGAAGTTGAAA 3025
Query 2965 CTTTATAATAACGAAATAAAGTTTGAGATAAGA-ACGAGCGTGACATaaaaaatgaaaaa 3023
|||||| |||||| ||||||||||||||| | |||||||||| |||||||||||||
Sbjct 3026 AATTATAA---CGAAATGAAGTTTGAGATAAGAGA-GAGCGTGACA-AAAAAATGAAAAA 3080
Query 3024 aaaaaaTTGTAATAT 3038
||| |||||||||
Sbjct 3081 CAAA--TTGTAATAT 3093
Score = 220 bits (119), Expect = 5e-56
Identities = 151/165 (92%), Gaps = 7/165 (4%)
Strand=Plus/Plus
Query 1 TCTAGATGAATACTATACCGAAGATGACTACACGTATAAGG-AA-ATAT-T-TC-GCCTT 55
||||||||||||||||||||| ||||||||||| | |||| || |||| | || | |||
Sbjct 1 TCTAGATGAATACTATACCGACGATGACTACACACACAAGGAAATATATATATCAG-CTT 59
Query 56 TCTTTTCGCCTATAAAATGGTCCCGGTTTAGAATCTAATTCCTTTATCTCTCATTTTCTT 115
||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TCTTTTCACCTA-AAAGTGGTCCCGGTTTAGAATCTAATTCCTTTATCTCTCATTTTCTT 118
Query 116 CTGCTTCACATTCCCGCTAGTCAAATGTTAATAAGTGTACACAAC 160
||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 119 CTGCTTCACATTCCCGCTAGTCAAATGTTAATAAGTGCACACAAC 163
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 151052665373
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5