BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492647
Length=1197
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22180.1 | Symbols: | F-box family protein with a domain of... 1609 0.0
AT4G22185.1 | Symbols: | pseudogene, similar to P0537A05.16, s... 575 4e-163
AT4G22660.1 | Symbols: | F-box family protein with a domain of... 545 3e-154
AT4G22165.1 | Symbols: | F-box family protein with a domain of... 457 1e-127
AT4G22170.1 | Symbols: | F-box family protein with a domain of... 357 1e-97
AT4G14165.1 | Symbols: | F-box family protein-related | chr4:8... 113 3e-24
> AT4G22180.1 | Symbols: | F-box family protein with a domain
of unknown function (DUF295) | chr4:11738574-11739782 FORWARD
LENGTH=1209
Length=1209
Score = 1609 bits (871), Expect = 0.0
Identities = 1051/1136 (93%), Gaps = 19/1136 (2%)
Strand=Plus/Plus
Query 7 AAAG-GGCATGAA-CCTAGTTCTCCTAAGCGTCTCAGACGAGATACACCCAATTCCTGGT 64
|||| ||||| || |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 6 AAAGTGGCAT-AACCCTAGTTCTCCTAAGCGTCTCAGAGGAGATACACCCAATTCCTGGT 64
Query 65 CGGAGCTTCCTCTAGATCTCTTGACTTCATTGTTCGAACGCCTCAGCTTTGCTAATTTCC 124
|||||||||||||||||||||||||| || |||||||||||||||||| ||| |||||||
Sbjct 65 CGGAGCTTCCTCTAGATCTCTTGACTGCAGTGTTCGAACGCCTCAGCTATGCAAATTTCC 124
Query 125 AACGAGCTAAATCCGTCTGTTCGTCTTGGCACTCCGCATCGCGACAATCCGTTCCCATAC 184
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 125 AACGAGCTAAATCCGTCTGTTCGTCTTGGCACTCCGGATCGAGACAATCCGTTCCCATAC 184
Query 185 AGATCCCTTGGCTAATTCTCTTCCCGGAAGAAGACAACAACAACAACAATTCATGCACGT 244
||||||||||||| ||||||||||| | | | | || |||||||||||||||||||||
Sbjct 185 AGATCCCTTGGCTGATTCTCTTCCC-G--G-A-A-TACGACAACAACAATTCATGCACGT 238
Query 245 TGTTCAATCCCGAGGAAAAAGGCAAAGTTTACAAAACGAAAGATCTTGGTGTTGAATTTG 304
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 239 TGTTCAATCCCGAGGAAAAAGGCCAAGTTTACAAAATGAAAGATCTTGGTGTTGAATTTT 298
Query 305 CAAAGAGTGTTTGTACTGCAACCTACGGAAGCTGGCTCCTTATGCGAGATCCACCGTATA 364
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 299 CAAAGAGTGTTTGTACTGCAACCTACGGAAGCTGGCTCCTTATGCGAGATCCACTGTATA 358
Query 365 ATCTCTATATTCTGAATCTATTCACCCGCGAGAGGATCAATCTACCTCCTTTTGAGTCAC 424
||||||||||| ||||||||||||||| ||||||| | |||||||||||||| |||||||
Sbjct 359 ATCTCTATATTTTGAATCTATTCACCCACGAGAGGGTAAATCTACCTCCTTTCGAGTCAC 418
Query 425 AACTTGGGATGACAAAGATCGAGCGAACCATAGATGATCAGTTTCGCATTT-CACCCCAT 483
||||||| ||| |||||| || ||||||||| ||||| ||||| | | | ||| ||||
Sbjct 419 AACTTGGCATGGTAAAGATTGAACGAACCATATATGATTGGTTTCAC-TCTACACTCCAT 477
Query 484 TACAACGGTAGGGAGTACCACAAACGTATTAGAATACAATCCCCTGTGTTTTGGATCGAC 543
|||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 478 TACAACGGTAAGGAGTACCACAAACGTATTAGAATACTATCCACTGTGTTTTGGATCGAT 537
Query 544 GAGAAAACCAAAGATTACGTAGTTATATGGGGACTTGGAAGTTTGTGTGTGGTTTATTCC 603
|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 538 GAGAAAACAAAAGATTACGTAGTTATATGGGGACTTGGAAGTTCATGTGTGGTTTATTCC 597
Query 604 AAGAAAGGAGATAAATGTTGGAATCAAATTCCAGAAAGTTCACATTGTCATCACATGGTT 663
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 598 AAGAAAGGAGATAAATGTTGGAATCAAATTCCAGAAACTTCAAATTGTCATCACATGGTT 657
Query 664 TACAAGGATCACAAGCTTTACCTCTCCAAGTCTAACTACAAATATGAATTCAGAATCTTT 723
||||||||||||||||||||| |||| | ||||| |||||||||||||||||||||||||
Sbjct 658 TACAAGGATCACAAGCTTTACTTCTCTACGTCTACCTACAAATATGAATTCAGAATCTTT 717
Query 724 GATTTCTCTAGAGAGATTCCGCAACAAACCTTTCAAGGTTGTGTCATTATGCAAGGACTT 783
|||||||||||||||||||| ||||||| ||||||||| | |||||||||||||||||||
Sbjct 718 GATTTCTCTAGAGAGATTCCTCAACAAATCTTTCAAGGCTATGTCATTATGCAAGGACTT 777
Query 784 ACATTAAATCATCATCCTGGTCAACCAGGTTATCCCTTTAG-TACTATTGATACAAAACT 842
|||||||||| ||||| |||||||||||||||||||||| | ||||||||||||||||||
Sbjct 778 ACATTAAATCGTCATCGTGGTCAACCAGGTTATCCCTTT-GCTACTATTGATACAAAACT 836
Query 843 TGTTGTCACAGTAACTGGAGATGTCCTCAAGGTTGATAGAATAGTGGAACGTAACAC-C- 900
||||||||||||||||||||||||||| |||||||| ||||||||||| | || | |
Sbjct 837 TGTTGTCACAGTAACTGGAGATGTCCTTAAGGTTGACAGAATAGTGGA--GAAAGAGACT 894
Query 901 AGAATCTGCAGATTTTTCGACGTCTACAAGGTTTATTCATCGGTGTCCTATAAGAAATAT 960
||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 895 AGAATCTGCAGATTTTTTTACGTCTACAAGGTTTATTCATCGGGGTCCTATAAGAAATAT 954
Query 961 GAAAAAGTTGAATCTTTGGGCAACGAGGCAATTCTTTTGGATCTAGGTATCACTATGCTA 1020
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 955 GAAAAAGTTGAATCTTTGGGGGACGAGGCAATTCTTTTGGATCTAGGTATCACTATGCTC 1014
Query 1021 GCCAATGACATTGTGGGACTCGaaaaaaaTTCCATCTATTTCAGTGGTACTCATACAAAG 1080
|||||||||| |||||||||| | ||||||||| ||||||||||||||||||||||||
Sbjct 1015 GCCAATGACACTGTGGGACTCCTAGGAAATTCCATTTATTTCAGTGGTACTCATACAAAG 1074
Query 1081 TCAGA-GGTCATTAACGATACATTTATCTTCAGTCTCGAGACACAGAAGATGGATC 1135
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 TC-GAAGGTCATTAACGATACATTTATCTTCAGTCTCGAGACACAGAAGATGGATC 1129
> AT4G22185.1 | Symbols: | pseudogene, similar to P0537A05.16,
similar to protein; blastp match of 28% identity and 3.1e-07
P-value to GP|13366010|dbj|BAB39287.1||AP002971 P0537A05.16
{Oryza sativa (japonica cultivar-group)} | chr4:11740053-11741234
FORWARD LENGTH=1182
Length=1182
Score = 575 bits (311), Expect = 4e-163
Identities = 579/703 (82%), Gaps = 39/703 (6%)
Strand=Plus/Plus
Query 12 GCATGAA-CCTAGTTCTCCTAAGCGTCTCAGACGAGATACA-CCCAATTCCTGGTCGGAG 69
|||| || |||| ||||| |||||||||||||||||| || ||| ||||||||||||||
Sbjct 30 GCAT-AACCCTAATTCTCAAAAGCGTCTCAGACGAGATTCATCCC-ATTCCTGGTCGGAG 87
Query 70 CTTCCTCTAGATCTCTTG-ACTTCATTGTTCGAACGCCTCAGCTTTGCTAATTTCCAACG 128
|||||||||||||||||| | || | ||||| ||||||||| |||||||||||||||||
Sbjct 88 CTTCCTCTAGATCTCTTGGATTT-AGTGTTCCAACGCCTCAATTTTGCTAATTTCCAACG 146
Query 129 AGCTAAATCCGTCTGTTCGTCTTGGCACTCCGCATCGCGACAATCCGTTCCCATA-C-A- 185
||| ||||| || |||||||||||| |||| || ||| |||||| ||| ||| | | |
Sbjct 147 AGCCAAATCTGTGTGTTCGTCTTGGTACTCTGCTTCGAGACAATGCGTGACCAAAACTAA 206
Query 186 GATCCCTTGGCTAATTCTCTTCCCGGAAGAAGACAACAACAACAACAATTCATGCACGTT 245
|||||||||||| ||||| ||||| || ||| | | || || |||||||||| |||| |
Sbjct 207 GATCCCTTGGCTGATTCTATTCCCC-AA-AAG-CGA-AA-AA-AACAATTCATTCACGCT 260
Query 246 GTTCAATCCCGAGGAAAAAGGCAAA-GTTTACAAAACGAAAGATCTTGGTGTTGAATTTG 304
||||||||||||||||| |||| ||| |||||||| ||||||||||||| |||||||
Sbjct 261 CCTCAATCCCGAGGAAAAACACAAACGTT-ACAAAACGCAAGATCTTGGTGTGGAATTTG 319
Query 305 CAAAGAGTGTTTGTACT-GCAACCTACGGAAGCTGGCTCCTTATGCGAGATCCACCGTAT 363
| ||| ||||||||| | |||||||| ||||| ||||||||||||| |||| || || |
Sbjct 320 CGAAGTGTGTTTGTA-TAGCAACCTATGGAAGTTGGCTCCTTATGCAAGATTCAAAGTGT 378
Query 364 AATCTCTATATTCTGAATCTATTCACCCGCGAGAGGATCAATCTACCTCCTTTTGAGTCA 423
||||| | ||| |||||| ||||||||||||||||||||| || |||||| | ||||||
Sbjct 379 AATCTAAACATTTTGAATCCATTCACCCGCGAGAGGATCAACCTTCCTCCTGTGGAGTCA 438
Query 424 CAACTTGGGATGACAAAGATC-GAGCGAACCATAGATGATCAG-TTTCGCATTTCACCCC 481
|||| ||| | | |||| | || |||| |||||||||| || ||||||||||||| |
Sbjct 439 CAACGTGGCAAGGTAAAGGTTAGA-CGAATCATAGATGAT-AGATTTCGCATTTCACACT 496
Query 482 ATTACAACGGTAGGGAGTACCACAA-ACGTATTAGAATACAATCCCCTGTGTTTTGGATC 540
|| ||| ||| || |||| ||| || | ||| || ||| ||||||||||||||||||
Sbjct 497 ATCACATCGGAAGCGAGT-CCA-AATA--TATGAGTATAGGATCCCCTGTGTTTTGGATT 552
Query 541 GACGAGAAAACCAAAGATTACGTAGTTATATGGGGACTTGGAAGTTTG-TGTGTGGTTTA 599
|||||||||||||||||||| ||||| | ||||||||| || | ||| ||||||||||
Sbjct 553 GACGAGAAAACCAAAGATTATATAGTTTTTTGGGGACTTAGA-GATTGGTGTGTGGTTTC 611
Query 600 TTCCAAGAAAGGAG-ATAAAT-GTTGGAATCAAATTCC-AGAAAGTTCACATTGTCATCA 656
| |||||||||| | ||| | || ||||||||||||| | ||| |||| |||||| | |
Sbjct 612 TGCCAAGAAAGG-GTATACCTCGT-GGAATCAAATTCCCA-AAACTTCAAATTGTCGTGA 668
Query 657 CATGGTTTACAAGGATCACAAGCTTTACCTC-T--CCAAGTCT 696
|||||| ||||||||||||||||||||| || | ||||||||
Sbjct 669 CATGGTGTACAAGGATCACAAGCTTTACTTCCTAACCAAGTCT 711
> AT4G22660.1 | Symbols: | F-box family protein with a domain
of unknown function (DUF295) | chr4:11914981-11916171 REVERSE
LENGTH=1191
Length=1191
Score = 545 bits (295), Expect = 3e-154
Identities = 820/1063 (77%), Gaps = 78/1063 (7%)
Strand=Plus/Plus
Query 51 ACCC-AATTCCTGGTCGGAGCTTCCTCTAGATCTCTTG-ACTTCA-TTGTTCGAACGCCT 107
|||| ||| |||||||||| |||||||||||||||||| |||| | || ||| |||||||
Sbjct 17 ACCCTAATACCTGGTCGGATCTTCCTCTAGATCTCTTGAACTT-AGTT-TTCAAACGCCT 74
Query 108 CAGCTTTGCTAATTTCCAACGAGCTAAATCCGTCTGTTCGTCTTGGCACTCCGCATCGCG 167
||||||||||||||| | || ||| ||||| || |||||||||||| |||| || |||
Sbjct 75 CAGCTTTGCTAATTTTCGACAAGCCAAATCGGTGTGTTCGTCTTGGTACTCTGCTTCGAA 134
Query 168 ACAATCCGTTCCC--ATA-CAGATCCCTTGGCTAATTCTCTTCCCGGAAG---AAGACAA 221
||||||||| ||| | | |||||||||||||| || |||||||| ||| || ||||
Sbjct 135 ACAATCCGTGCCCAAAAATCAGATCCCTTGGCTGATGCTCTTCCCCAAAGACAAAAACAA 194
Query 222 CAACAACAACAATTCATGCACG---TTGTTCAATCCCGAGGAAAAAGGCAAAGTTTACAA 278
|||||| |||| |||||||||| || |||||||||||||| |||| | || ||||| |
Sbjct 195 CAACAAAAACAGTTCATGCACGATTTTTTTCAATCCCGAGGACAAAGACCAACTTTACCA 254
Query 279 AACGAAAGATCTTGGTGTTGAATTTGCAAAGAGTGTTTGTACT-GCAACCTACGGAAGCT 337
|||| ||||||||||||||||||||||||||||||||||| || |||||||| ||||| |
Sbjct 255 AACGCAAGATCTTGGTGTTGAATTTGCAAAGAGTGTTTGT-CTAGCAACCTATGGAAGTT 313
Query 338 GGCTCCTTATGCGAGATCCACCGTATAATCTCTATATTCTGAATCTATTCACCCGCGAGA 397
||||||| |||| |||| || ||||||||| || ||| |||||| ||||||| |||||
Sbjct 314 GGCTCCTGATGCAAGATTCAAAGTATAATCTATACATTTTGAATCCATTCACCTACGAGA 373
Query 398 GGATCAATCTACCTC-CTTTTGAGTCACAAC---TTGGGATGACAAAGATCGAGCGAACC 453
|||| ||| || | || |||| ||||||| |||| ||| |||| | || | ||||
Sbjct 374 AGATCGGTCTTCC-CGCTATTGAATCACAACAAGTTGGCATGGTAAAGGTTGACCAAACC 432
Query 454 ATAGATGATCAGTTTCGCA-TTTC-ACCC-CATTACAACGGTAGGGAGT-ACCACAAACG 509
||||||||| | |||| | |||| || || || ||| || ||| | |||| |
Sbjct 433 ATAGATGATGATTTTCTAACTTTCGACGATCACAACCACGTTA---AGTTATT-CAAAGG 488
Query 510 TATTAGA-A---TACA-ATCCCCTGTGTTTTGGATCGACGAGAAAACCAAAGATTACGTA 564
|| || | | ||| | |||||||||||||||| ||||||||||||||||| ||| ||
Sbjct 489 TAATA-ATACCGTACGTA-CCCCTGTGTTTTGGATTGACGAGAAAACCAAAGAGTACATA 546
Query 565 GTTATATGGGGACTTGGA-AGTTTGTGTGTGGTTTATTCCAAGAAAGGAGATAAAT-GTT 622
| | | ||||| |||||| | || ||||||||||||| ||||||| |||||||| | ||
Sbjct 547 GCTCTGTGGGGGCTTGGATA-TTGGTGTGTGGTTTATGCCAAGAACGGAGATAAGTTGT- 604
Query 623 GGAATCAAATTCCAGAAAGT-TC--ACATTGTCATCACATGGTTTACAAGGATCACAAGC 679
|||||||||||||||||| | | | ||| || | ||||||||||||||||||||||||
Sbjct 605 GGAATCAAATTCCAGAAATTATTTTAGATTCTCTTGACATGGTTTACAAGGATCACAAGC 664
Query 680 TTTACCTC-TCCAAGTCTAACTACAAATATGAATTCAGAATCTTTGATTTCTCTAGAGAG 738
||||| || | | | ||| | | |||| | |||| |||| | ||||| ||| |||||
Sbjct 665 TTTAC-TCATTTA-G-CTA-C-AGAAATCTT--TTCACAATCCTAGATTTTTCTGGAGAG 717
Query 739 ATTCCGCAACAAA-CCTTTCAAGGTTGTGT-CAT-TATGCAAGGA-CTTACA--TTAAAT 792
||||| | | ||| |||||||| ||| | | ||| | | | | | || | |||| |
Sbjct 718 ATTCCTCGA-AAAGCCTTTCAATGTTTTATGCATGTCTATA-G-ATCTGAGTGGTTAAGT 774
Query 793 CATCATCCTGGTCAACCAGGTTATCCCTTTAGTAC-TAT--TGATACAAAACTTGTTGTC 849
| || | | ||||| | || || | | || | | | ||| ||||||||||| |||
Sbjct 775 CCTCGTAGTCGTCAATTAAGTAATTCATG--GTGCGT-TGCTGAGACAAAACTTGTAGTC 831
Query 850 ACAGTAACTGGAGATGTCCTCAAGGTTGATAGAATAGTGGA-ACGTAACACCAGAATCTG 908
|||||||| |||||||||||| |||||| ||||| || | || | | ||||||
Sbjct 832 ACAGTAACCGGAGATGTCCTCTTGGTTGAAAGAAT-GTTAAGACATTGGTCTAGAATC-- 888
Query 909 CAGATTTTTCGACGTCTACAAGGTTTATTCATC-GGTGTCCTATAA-GA-AA-TATGAAA 964
||| | ||| ||||||||||| ||||||| || || | | | | || || ||||||
Sbjct 889 CAG-TCATTCAACGTCTACAAGTTTTATTCGTCAGG-GACATTTCTTGATAAATATGAAC 946
Query 965 AAGTTGAATCTTTGGGCAACGAGGCAATTCTTTTGGATCTAGGTATCACTATGCTAGCCA 1024
| ||| ||||||||| |||||||||| |||||||||||||| ||||| |||| ||||
Sbjct 947 TTGCTGATTCTTTGGGCGACGAGGCAATGCTTTTGGATCTAGGCATCACCGTGCTCGCCA 1006
Query 1025 ATGACA-TTGTGGGACTCGaaaaaaaTTCCATCTATTTCAGTG 1066
|||| | ||| ||||||| | | |||| | || ||||||||||
Sbjct 1007 ATGA-AGTTGAGGGACTCCATAGAAATACTATATATTTCAGTG 1048
> AT4G22165.1 | Symbols: | F-box family protein with a domain
of unknown function (DUF295) | chr4:11734328-11735419 FORWARD
LENGTH=1092
Length=1092
Score = 457 bits (247), Expect = 1e-127
Identities = 523/652 (80%), Gaps = 35/652 (5%)
Strand=Plus/Plus
Query 47 ATACACCC-AATTCCTGGTCGGAGCTTCCTCTAGATCTCTTGA-CTTCA-TTGTTCGAAC 103
||| |||| ||| | |||||||||||||||||||||||||||| ||| | || ||| |||
Sbjct 14 ATA-ACCCTAATACATGGTCGGAGCTTCCTCTAGATCTCTTGAACTT-AGTT-TTCAAAC 70
Query 104 GCCTCAGCTTTGCTAATTTCCAACGAGCTAAATCCGTCTGTTCGTCTTGGCACTCCGCAT 163
|||||||||| | |||||||||||||||||||||||| || || || || |||| | |
Sbjct 71 GCCTCAGCTTAGTTAATTTCCAACGAGCTAAATCCGTATGCTCCACTCGGTACTCTGTTT 130
Query 164 CGCGACAATCCGTTCCC-ATAC---AGATCCCTTGGCTAATTCTCTTCCCGGAAGAAGAC 219
|| |||||| ||| ||| | || ||||| ||| ||| ||||||||||| ||||||||
Sbjct 131 CGAGACAATGCGTGCCCGA-ACGTCAGATCGCTTTGCTGATTCTCTTCCCCAAAGAAGAC 189
Query 220 AACAACAACAACAATTCATGCACGTTGTTCAATCCCGAGGAAAAAGGCAAAGTTTACAAA 279
|||| | | |||| | | || | ||||||||||||||| ||||||| |||| |||||||
Sbjct 190 AACACCGATAACAGTACTTGTAAGTTGTTCAATCCCGACGAAAAAGACAAACTTTACAAG 249
Query 280 ACGAAAGATCTTGGTGTTGAATTTGCAAAGAGTGTTTGTACTGCAACCTACGGAAGCTGG 339
| | ||||||||||||| |||||||||||||||||||||| ||||| || ||||| |||
Sbjct 250 ATGCAAGATCTTGGTGTGGAATTTGCAAAGAGTGTTTGTAGGGCAACTTATGGAAGTTGG 309
Query 340 CTCCTTATGCGAGATCCACCGTATAATCTCTATATTCTGAATCTATTCACCCGCGAGAGG 399
||||| |||| |||| || |||| |||| || ||| ||||| ||||||| ||| |||||
Sbjct 310 CTCCTGATGCAAGATTCAAAGTATCATCTATACATTTTGAATATATTCACTCGCAAGAGG 369
Query 400 ATCAATCTACCTCCTTTTGAGTCACAACTTGGGATGACAAAGATCGAGCGAACCATAGAT 459
|||||||| |||||| | |||||||||||||| ||| |||||| || ||||||||| ||
Sbjct 370 ATCAATCTTCCTCCTGTGGAGTCACAACTTGGCATGGTAAAGATTGAACGAACCATATAT 429
Query 460 GATCAGTTTCGCATTTCACCCCATTACAACGGTAGGGAGTACCACAAACGTATTAGAATA 519
||| ||||| | |||||| | | || | || || | | || | ||
Sbjct 430 GATTGGTTTCACTTTTCACACGGT--CA-C--TAT--AG--CT-------T-TTCGC-TA 471
Query 520 CAAT-CCCCTGTGTTTTGGATCGACGAGAAAACCAAAGATTACGTAGTTATATGGGGACT 578
| | |||||||||||||||| |||||| || |||||||||| ||||||| ||||||||
Sbjct 472 -AGTTCCCCTGTGTTTTGGATTGACGAGGAATCCAAAGATTATATAGTTATGTGGGGACT 530
Query 579 TGGAAGTTTGT-GTGTGGTTTATTCCAAGAAAGGAGATAAAT-GTTGGAATCAAATTCCA 636
|||| |||| | ||||||||||| ||||||||||||||| | || |||||||||| ||
Sbjct 531 TGGA-GTTTATTGTGTGGTTTATGCCAAGAAAGGAGATACCTCGT-GGAATCAAATCCCC 588
Query 637 GAAAGTTCACATTGTCATCACATGGTTTACAAGGATCACAAGCTTTACCTCT 688
||| |||| ||| | || ||||||||||||||||||||||||||||| |||
Sbjct 589 CAAACTTCATATTTTTATGACATGGTTTACAAGGATCACAAGCTTTACTTCT 640
> AT4G22170.1 | Symbols: | F-box family protein with a domain
of unknown function (DUF295) | chr4:11736653-11737744 FORWARD
LENGTH=1092
Length=1092
Score = 357 bits (193), Expect = 1e-97
Identities = 319/378 (84%), Gaps = 16/378 (4%)
Strand=Plus/Plus
Query 47 ATACACCC-AATTCCTGGTCGGAGCTTCCTCTA-GATCTCTTG-ACTTCATTGTTCGAAC 103
||| |||| ||||||||||| || ||||||| | ||||||||| |||| |||||||||
Sbjct 14 ATA-ACCCTAATTCCTGGTCTGATCTTCCTC-ACGATCTCTTGAACTT-GGTGTTCGAAC 70
Query 104 GCCTCAGCTTTGCTAATTTCCAA-CGAGCTAAATCCGTCTGTTCGTCTTGGCACTCCGCA 162
||||||||||||||||||| ||| ||||| | ||||| |||||||||||| |||| ||
Sbjct 71 GCCTCAGCTTTGCTAATTT-CAACCGAGCCAGGTCCGTGTGTTCGTCTTGGTACTCTGCT 129
Query 163 TCGCGACAATCCGTTCCC--ATA-CAGATCCCTTGGCTAATTCTCTTCCCGGAAG--AA- 216
||| ||||||| || ||| | | ||||||| |||||| ||||||||||| |||| ||
Sbjct 130 TCGAGACAATCGGTGCCCAAAAATCAGATCCATTGGCTGATTCTCTTCCCTGAAGACAAC 189
Query 217 GACAACAACAACAACAATTCATGCACGTTGTTCAATCCCGAGGAAAAAGGCAAAGTTTAC 276
||||||| ||||||| |||||||||||||||||||||||| ||||||| |||| |||||
Sbjct 190 AACAACAAGAACAACAGTTCATGCACGTTGTTCAATCCCGATGAAAAAGACAAACTTTAC 249
Query 277 AAAACGAAAGATCTTGGTGTTGAATTTGCAAAGAGTGTTTGTACTGCAACCTACGGAAGC 336
|||||| || |||||| || |||||||||||||||||||||| |||||||| |||||
Sbjct 250 AAAACGCAACATCTTGATGAGGAATTTGCAAAGAGTGTTTGTAGGGCAACCTATGGAAGT 309
Query 337 TGGCTCCTTATGCG-AGATCCACCGTATAATCTCTATATTCTGAATCTATTCACCCGCGA 395
||| |||| ||| | |||||| | || ||||||||||||| ||||||| || ||||||||
Sbjct 310 TGGTTCCTAATG-GTAGATCCTCTGTTTAATCTCTATATTTTGAATCTCTTTACCCGCGA 368
Query 396 GAGGATCAATCTACCTCC 413
||| |||||||||| |||
Sbjct 369 GAGAATCAATCTACATCC 386
> AT4G14165.1 | Symbols: | F-box family protein-related | chr4:8174598-8175715
REVERSE LENGTH=807
Length=807
Score = 113 bits (61), Expect = 3e-24
Identities = 125/154 (81%), Gaps = 12/154 (8%)
Strand=Plus/Plus
Query 606 GAAAGGAGATAAATGTTGGAATCAAAT-TCCAGAAAGTTCACATTGTCAT-CACATGGTT 663
||||||||||| ||||||||||||||| ||| ||| |||| ||||| | |||||||||
Sbjct 276 GAAAGGAGATACATGTTGGAATCAAATCCCCA-AAACTTCAGATTGT-TTCCACATGGTT 333
Query 664 TACAAGGATCACAAGCTTTACCTCTCC-AAGTCTAACTACAAATATGAATTCAGAATCTT 722
||||||||||||||||||||| | ||| || | || || || | |||| ||||||
Sbjct 334 TACAAGGATCACAAGCTTTAC-T-TCCTAAA-CAAA--ACTGGTA-GT-TTCAAAATCTT 386
Query 723 TGATTTCTCTAGAGAGATTCCGCAACAAACCTTT 756
|||||| | | |||| ||||| ||||||||||||
Sbjct 387 TGATTTTTGTGGAGATATTCCACAACAAACCTTT 420
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58784838195
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5