BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492649
Length=608
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22160.2 | Symbols: | unknown protein; Has 30201 Blast hits... 560 5e-159
> AT4G22160.2 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:11733123-11734027
FORWARD LENGTH=698
Length=698
Score = 560 bits (303), Expect = 5e-159
Identities = 395/437 (90%), Gaps = 15/437 (3%)
Strand=Plus/Plus
Query 1 ATGGGCAAGTCGGCAAGATTTCGCCGGAGCCAGACCTCATCGTCGGAGAATAATCCGACC 60
|||||||||||||||||| ||||||||||||||||||||||| | | ||
Sbjct 60 ATGGGCAAGTCGGCAAGACTTCGCCGGAGCCAGACCTCATCG-C----------CGGA-- 106
Query 61 GACGATGTCTTGACGGGTAAAGATAGCTCCGACGATCCTTACAGCTCCGACTCAGACACT 120
|| |||||||| |||||||||||||||||| ||||||||||| ||||||||||| |||
Sbjct 107 GA--ATGTCTTGTTGGGTAAAGATAGCTCCGATGATCCTTACAGATCCGACTCAGAGACT 164
Query 121 GAGTCAAACTTGAGCTCCGGGACCGAGTCAAACATGAGCTGTGACTCGGCAACTTCGACG 180
|| ||||||| |||||||||||||||||| |||||||||| |||||| |||||||| |
Sbjct 165 GAATCAAACTCGAGCTCCGGGACCGAGTCGAACATGAGCTCTGACTCTACAACTTCGGCA 224
Query 181 GGACTGTCGGCGATCATACGAGTCTTGTCTGATTCTCTGCTTCGAACGGAATTAGCGGAG 240
||| |||||||||| |||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 225 GGAGTGTCGGCGATGATACGAGTCTTGTCTGATTCTCTGCTTCGAACGGAACTCGCGGAG 284
Query 241 ATGGAGATGATCAAGGCTCGTGAAGCAGCGAGGTTGGAAGCTGAGAAGAGAAGGTTGGAA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 285 ATGGAGATGATCAAGGCTCGTGAAGCAGCGAGGTTGGAAGCTGAGAAGAGAAGGTTGGAA 344
Query 301 ATGGAAGTCGACTTGACTCAGATGATGCTTCAGACTCATTTGCAAGCTACGACGTCGTTA 360
|||||||||||||||||||||||| |||||||||||||||||||||| | | ||||||||
Sbjct 345 ATGGAAGTCGACTTGACTCAGATGGTGCTTCAGACTCATTTGCAAGCGATGTCGTCGTTA 404
Query 361 TTCGTCGGAGAACATAAGATTTCTCCGGCACAGAGGAAGAGGAAGAGATCAGACGTTGAA 420
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 405 CCCGTCGGAGAACATAAGATTTATCAGGCACAGAGGAAGAGGAAGAGATCAGACGTTGAA 464
Query 421 GAACTCGAGTCCTCTAC 437
|||||||||||||||||
Sbjct 465 GAACTCGAGTCCTCTAC 481
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29286507701
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5