BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492650
Length=1039
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22150.1 | Symbols: PUX3 | plant UBX domain-containing prote... 1434 0.0
AT4G04210.1 | Symbols: PUX4 | plant UBX domain containing prote... 568 5e-161
> AT4G22150.1 | Symbols: PUX3 | plant UBX domain-containing protein
3 | chr4:11731138-11732901 REVERSE LENGTH=1339
Length=1339
Score = 1434 bits (776), Expect = 0.0
Identities = 874/921 (95%), Gaps = 8/921 (1%)
Strand=Plus/Plus
Query 123 GAGATATGTCGTCTAAGGACAAGAAACCGGCGAAGCCAACGAGTGGTCGGACTGGTGGTA 182
||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||
Sbjct 292 GAGATATGTCGTCTAAGGACAAGAAACTATCGAAGCCAACAAGTGGTCGTACTGGTGGTA 351
Query 183 TCCGTACACTTTCCGATCTGAACCGAAGATCAGAGCCTGATTCCGATAGTGACTCCGATG 242
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 352 TCCGTACACTTTCCGATCTGAACCGAAGATCAGAACCTGATTCCGATAGTGACTCCGATG 411
Query 243 GACCTCAAGAGTACTACACCGGTGGCGAAAAAAGTGGTATGCTTGTTCAGGATCCTACAA 302
|||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 412 GACCTCAAGAATACTTCACCGGTGGCGAAAAAAGTGGTATGCTTGTTCAAGATCCTACAA 471
Query 303 AAGAACCAAAACACGATGATGTTGATGAGATATTTAATCAAGCAAGACAACTAGGAGCTG 362
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 472 AAGAACCAAAACACGATGATGTTGATGAGATATTTAATCAAGCAAGACAGCTAGGAGCTG 531
Query 363 TAGAAGGACCTCTTGAGCGTCCTTCAAGTTCCAGAAGCTTTACTGGAACCGGGAGATTGC 422
| |||||||||||||||| |||||| ||||| ||||||||||| ||||| || |||||||
Sbjct 532 TGGAAGGACCTCTTGAGCATCCTTCGAGTTCTAGAAGCTTTACAGGAACAGGAAGATTGC 591
Query 423 TTTCTGGAGAAAGTGTGCCAACGGCTCTTCAACAGCCTGAGCCTGTGATTCACAATATTA 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 TTTCTGGAGAAAGTGTGCCAACGGCTCTTCAACAGCCTGAGCCTGTGATTCACAATATTA 651
Query 483 TTTTCTGGTCTAATGGATTCACTGTAGATGATGGACCTTTGAGGAAGTTGGATGATCCAG 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 TTTTCTGGTCTAATGGATTCACTGTAGATGATGGACCTTTGAGGAAGTTGGATGATCCAG 711
Query 543 AGAATGCATCTTTTCTTGATAGCATTCGAAAGTCTGAATGCCCGAAAGAGCTTGAGCCTG 602
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 712 AGAATGCTTCTTTTCTTGATAGCATTCGAAAGTCTGAATGTCCGAAAGAGCTTGAGCCTG 771
Query 603 CTGATAAGAGAGCTCCGGTACATGTCAATCTTATGAGAAGAGATGAGAAATGCCCTGAGA 662
|||||| |||||||| |||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 772 TTGATAAAAGAGCTCCTGTACATGTTAATCTTATGAGAAGAGATGAGAAGTGCCCTGAGA 831
Query 663 AAGAGAAA-CTTAAGGTTGCATTTCAAGGAGTTGGAAGGACTCTAGGTGGTGCAAGCTCA 721
|||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 832 AAGA-AAAGCTTAAGGTTTCATTTCAAGGAGTTGGAAGGACTCTAGGTGGTGCAAGCTCA 890
Query 722 TCAGCAGCTTCAAGCCTA-GACAACCTAACTGATGTAGCAGCGGTTTCA-TCACCGTCAC 779
||| |||||||||||| | | |||||||||||||||||||||||| || ||||||| ||
Sbjct 891 TCAACAGCTTCAAGCCAAAGT-AACCTAACTGATGTAGCAGCGGTT-CAATCACCGTTAC 948
Query 780 AGAGCCTTGTTGTAGATGAAACTCTTCCATCCACATCGATCCAGCTTAGACTCGCGGACG 839
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 949 AGAGCCTTGTAGTAGATGAAACTCTTCCATCCACATCGATCCAGCTTAGACTCGCGGATG 1008
Query 840 GGACACGCATGGTAGCTAAGTTCAACAACCATCACACGGTCAACGACATTCGTGGTTTCA 899
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1009 GGACACGCATGGTAGCAAAGTTCAACAACCATCACACGGTTAACGACATTCGTGGTTTCA 1068
Query 900 TCGAGTTTTCTCGACCAGGGAATCCAATGAACTACACCCTTCAGGTCATGGGGTTCCCAC 959
| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1069 TTGAGTTTTCTCGACCAGGGAATCCAAACAACTATACCCTTCAGGTCATGGGGTTCCCAC 1128
Query 960 CAAAGCCACTTACTGACCCTTCTCAGACCATTGATCAAGCCGGTCTCGCGAA-TTCTGTA 1018
|||||||||||||||||||||||||||||||||| ||||||||||| || || |||||||
Sbjct 1129 CAAAGCCACTTACTGACCCTTCTCAGACCATTGAACAAGCCGGTCTAGC-AAGTTCTGTA 1187
Query 1019 GTCATTCAGAAATTCTAGAAA 1039
|||||||||||||||||||||
Sbjct 1188 GTCATTCAGAAATTCTAGAAA 1208
Score = 156 bits (84), Expect = 5e-37
Identities = 94/99 (95%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 1 TTAATGTTAGTTTTGTTTCTGGCTAAGCACACGCGCATAAGAGAACACGCTTTAGAATTA 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 99 TTAATGCTAGTTTTGTTTCTGGCTAAGCACACGCGCATAAGAGAACACGCTTTAGAATTA 158
Query 61 ACTAGGAGTGGGTTACACGCGCTTAGTTTTCGCGTAAAA 99
|| ||||||| |||||||||||| ||||||||||||||
Sbjct 159 ACAAGGAGTGTATTACACGCGCTTGGTTTTCGCGTAAAA 197
> AT4G04210.1 | Symbols: PUX4 | plant UBX domain containing protein
4 | chr4:2030319-2031853 FORWARD LENGTH=1167
Length=1167
Score = 568 bits (307), Expect = 5e-161
Identities = 507/599 (85%), Gaps = 31/599 (5%)
Strand=Plus/Plus
Query 128 ATGTCGTCTAAGGACAAGAAACCGGCGAAGCCAACGAGTGGTCGGACTGGTGGTATCCGT 187
||||| || || |||||||||||| |||||||| ||||| ||| | |||||| |||||
Sbjct 73 ATGTCTTCGAAAGACAAGAAACCGTCGAAGCCATCGAGTAGTC-G--TGGTGGAATCCGA 129
Query 188 ACACTTTCCGATCTGAACCGAAGATCAGAG-CCTGATTCCGATAGTGACTCCGATGGACC 246
|| ||||||||||| ||||| || || | | ||||| ||||| ||||| |||||||| ||
Sbjct 130 ACTCTTTCCGATCTTAACCGTAGGTCTG-GTCCTGACTCCGACAGTGATTCCGATGGTCC 188
Query 247 TCAAGAGTACTACACCGGTGGCGAAAAAAGTGGTATGCTT-GTTCAGGATCCTACAAAAG 305
||||| |||||||| ||||| || |||||||||||| || ||||| ||| | | | |
Sbjct 189 ACAAGAATACTACACAGGTGGTGAGAAAAGTGGTATG-TTAGTTCAAGAT-C--C-ATCG 243
Query 306 AACCAAAACACGATGATGTTGATGAGATATTTAATCAAGCAAGACAACTAGGAGCTGTAG 365
| |||| | ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 244 -A--AAAA-A-GATGATGTTGATGAGATATTTAATCAAGCTAGACAACTAGGAGCTGTAG 298
Query 366 AAGGACCTCTTGAGCGTCCTTCAAGTTCCAGAAGCTTT-ACTGGAACCGGGAGATTGCTT 424
||||||||||||||| ||| | |||||||| || ||| |||||||| || |||||||||
Sbjct 299 AAGGACCTCTTGAGCCACCTCCGAGTTCCAGGAG-TTTCACTGGAACTGGTAGATTGCTT 357
Query 425 TCTGGAGAAAGTGTGCCAAC-GGCTCTTCAACAGCCTGAGCCTGT-GATTCACAATATTA 482
||||| |||| |||||| || || | |||||||||||||||||| | ||||||| |||
Sbjct 358 TCTGGTGAAAATGTGCCTACTGG-TAATCAACAGCCTGAGCCTGTTG-TTCACAACATTG 415
Query 483 TTTTCTGGTCTAATGGATTCACTGTAGATGATGGACCTTTGAGGAAGTTGGATGATCCAG 542
|||||||||||||||| |||||| | |||||||| ||||||||||| ||||||||||| |
Sbjct 416 TTTTCTGGTCTAATGGTTTCACTATTGATGATGGTCCTTTGAGGAAATTGGATGATCCTG 475
Query 543 AGAATGCATCTTTTCTTGATAGCATTCGAAAGTCTGAATGCCCGAAAGAGCTTGAGCCTG 602
|||||||||| ||||| || ||||||||||||||||| ||||||||||||||||||||||
Sbjct 476 AGAATGCATCGTTTCTCGAGAGCATTCGAAAGTCTGAGTGCCCGAAAGAGCTTGAGCCTG 535
Query 603 CTGATAAGA-GAGCTCCGGTACATGTCAATCTT-ATGAGAAGAG-ATGAGAAATGCCCTG 659
| |||| || |||||||||| |||||||| ||| ||| ||| || | |||||||||||||
Sbjct 536 CCGATA-GAAGAGCTCCGGTTCATGTCAA-CTTGATGCGAA-AGGAAGAGAAATGCCCTG 592
Query 660 AGAA-AGAGAAACTTAAGGTTGCATTTCAAGGAGTTGGAAGGACTCTAGGTGGT-GCAA 716
| || | |||||| || |||| ||||||| || |||||||| |||||||||||| ||||
Sbjct 593 A-AAGACAGAAACGTAGGGTTTCATTTCAGGGTGTTGGAAGAACTCTAGGTGGTAGCAA 650
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50937425058
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5