BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492663
Length=1273
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22110.1 | Symbols: | GroES-like zinc-binding dehydrogenase... 1144 0.0
AT1G22440.1 | Symbols: | Zinc-binding alcohol dehydrogenase fa... 693 0.0
> AT4G22110.1 | Symbols: | GroES-like zinc-binding dehydrogenase
family protein | chr4:11711336-11714228 REVERSE LENGTH=1391
Length=1391
Score = 1144 bits (619), Expect = 0.0
Identities = 759/825 (92%), Gaps = 15/825 (2%)
Strand=Plus/Plus
Query 1 TAATAAGTTCATACTCTATCACCCACCATGGACAAGGCATC-ATCGTTCTCCATTCACGA 59
||||||||||||| ||||||| |||||||||| || |||| || |||||||||||||||
Sbjct 109 TAATAAGTTCATAATCTATCATCCACCATGGAGAAAACATCAAT-GTTCTCCATTCACGA 167
Query 60 AGGAAAGCCGATTCGATGCAAAGCAGCAATATCTAGGAAACCAGGAGAAGCATTGGTGAT 119
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 168 AGGAAAGCCGATTCGATGCAAAGCAGCAGTATCTAGAAAACCAGGAGAAGCATTGGTGAT 227
Query 120 AGAAGAGATCCATGTGGATCCACCTCAAGCTTACGAAGTTAGGATTAAGATCATATGTAC 179
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 228 AGAAGAGATCCATGTGGATCCACCTCAAGCTTATGAAGTTAGGATAAAGATCATATGTAC 287
Query 180 ATCTTTATGTCACACCGATGTTTCTTTCTGGAAAGTAGAAAGTGGACCGCTTGTAAGGTT 239
|||||||||||| |||||||||||||||| |||| |||| ||||||||||||| ||||||
Sbjct 288 ATCTTTATGTCATACCGATGTTTCTTTCTCGAAAATAGACAGTGGACCGCTTGCAAGGTT 347
Query 240 TCCTATGATTCTAGGACACGAAGCAGTCGGTGTGATCGAGAGTATTGGTGAACCTGTGAA 299
||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 348 TCCTAGGATTCTAGGACACGAAGCAGTCGGTGTGATCGAGAGCATTGGTGAACATGTGAA 407
Query 300 TGGATTTCAACAAGGTGACGTCGTTTTGCCAGTGTTTCACCCTCATTGTGAAGAATGTAG 359
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 408 TGGATTTCAACAAGGTGACGTCGTTTTGCCAGTGTTTCACCCTCACTGTGAAGAATGTAG 467
Query 360 AGACTGCAAATCCTCAAAGAGCAACTGGTGTGCAAGATTTGCCGATGATTT-TGCATCAA 418
||| |||||||||||||||||||||||||| |||||||||||||| ||||| | |||||
Sbjct 468 AGATTGCAAATCCTCAAAGAGCAACTGGTGCGCAAGATTTGCCGACGATTTCTT-ATCAA 526
Query 419 ACACAAGACGGTATGGAATGACTTCAGGATTCAAAGACTC-TTCGGGAGAAGATATTAAC 477
|||| ||||| ||||||||||||||| ||||||||||||| || || |||||||||| ||
Sbjct 527 ACACGAGACGATATGGAATGACTTCACGATTCAAAGACTCCTTTGG-AGAAGATATTTAC 585
Query 478 CATTTTCTCTTTGTCTCAAGTTTTTCTGAATATACCGTCGTAGATATCGCACATCTCGTC 537
||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||| |||
Sbjct 586 CATTTTCTCTTTGTCTCGAGTTTTTCTGAATATACGGTCGTCGACATCGCACATCTTGTC 645
Query 538 AAAATGTCTCCTGATATTCCGGTTGATAAAGCAGCATTGCTCAGCTGCGGTGTTTCCACA 597
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 646 AAAATCTCTCCTGATATTCCGGTTGATAAAGCAGCATTGCTTAGCTGCGGTGTTTCCACA 705
Query 598 GGAATTGGAGCAGCTTGGAAAGTGGCTAACATGGAACAAGGCTCCACCATTGCACTTTTT 657
|||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| |||||
Sbjct 706 GGAATTGGAGCAGCTTGGAAAGTGGCTAACGTGGAAAAAGGCTCCACCGTTGCAGTTTTT 765
Query 658 GGCCTTCGTGCTGTTGGACTTGCGGT---ATCA--ATTT----TGCGTGGAGCCGGCAAG 708
|||||| ||||||||||||||||||| | | | |||||||||||||||||
Sbjct 766 GGCCTTGGTGCTGTTGGACTTGCGGTTGGAGAAGGAGCCAGGCTGCGTGGAGCCGGCAAG 825
Query 709 ATCATTGGTGTTGATCTCAATGCTGAAAAATTCGACCTAGGTAAGAAATTTGGTTTCACG 768
||||||||||||||||||||| | ||||||||||| ||||| ||||||||||||||||||
Sbjct 826 ATCATTGGTGTTGATCTCAATCCAGAAAAATTCGAGCTAGGCAAGAAATTTGGTTTCACG 885
Query 769 GATTTCATCAATCCTACCTTGTGTGGAAAAAAGAAGATTAGCGAG 813
|||||||||||| |||||||||||||| |||| ||||||||||||
Sbjct 886 GATTTCATCAATTCTACCTTGTGTGGAGAAAATAAGATTAGCGAG 930
Score = 377 bits (204), Expect = 1e-103
Identities = 246/266 (92%), Gaps = 4/266 (2%)
Strand=Plus/Plus
Query 972 GGGTAGCCTTGATCTTCTTAGAGGCAGACATGTTTGTGGAAGCTTGTTTGGTGGTCTTAA 1031
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 GGGTAGCTTTGATCTTCTCAGAGGCAGACATGTTTGTGGAAGCTTGTTTGGTGGTCTTAA 1142
Query 1032 ACCCAAACTGGATATTCCCATTCTCGTTGATCATTACTTAAAAAAG---CTTAATCTGGA 1088
||||||||| |||||||| ||||| ||||||||||||||||||||| |||||| ||||
Sbjct 1143 ACCCAAACTAGATATTCCGATTCTGGTTGATCATTACTTAAAAAAGGAGCTTAATTTGGA 1202
Query 1089 TAGTTTCATTACGCATGAACTGAAATTTGAGGAAATCAATAAAGCTTTCGATTTATTAGT 1148
|||||| ||||| |||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 1203 TAGTTTTATTACACATGAATTGAAATTTGAGGAAATCAACAAAGCTTTCGATTTATTAGT 1262
Query 1149 ACAAGGGAAGTCTCTCCGCTGCATTCTATGGATGAACAAGGTAAAGTGATTAATTATGTT 1208
||||| |||||||||||||||||||| |||||||||||| | |||||||||||||||||
Sbjct 1263 GCAAGGAAAGTCTCTCCGCTGCATTCTTTGGATGAACAAG-TGAAGTGATTAATTATGTT 1321
Query 1209 GAAAGTATATATGTTGAAAAAGTGAT 1234
|||| |||||||||||||||| ||||
Sbjct 1322 GAAACTATATATGTTGAAAAATTGAT 1347
Score = 159 bits (86), Expect = 4e-38
Identities = 103/111 (93%), Gaps = 1/111 (1%)
Strand=Plus/Plus
Query 845 TGATTCAAGAAATGACAGGAGGAGGAGTTGACTATAGCTTCGAATGCGTTGGTTTACCTT 904
||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 932 TGATTAAAGAAATGACTGGAGGAGGAGTTGACTATAGTTTCGAATGCGTTGGTTTACCTT 991
Query 905 CTTTATTTGACCGAAGCTTTCAACAGCACCCCCACGGGTTCAGGAAAAACG 955
||||||| ||||||||||||| |||||| | |||||||||||||||||||
Sbjct 992 CTTTATT-GACCGAAGCTTTCTCCAGCACTCGCACGGGTTCAGGAAAAACG 1041
> AT1G22440.1 | Symbols: | Zinc-binding alcohol dehydrogenase
family protein | chr1:7922428-7924944 FORWARD LENGTH=1478
Length=1478
Score = 693 bits (375), Expect = 0.0
Identities = 651/781 (83%), Gaps = 32/781 (4%)
Strand=Plus/Plus
Query 54 TCAC-GAAGGAAAGCCGATTCGATGCAAAGCAGCAATATCTAGGAAAC-CAGGAGAAGCA 111
|||| |||||||||||||||||||||||||||||||| | || |||| |||||||| ||
Sbjct 149 TCACTGAAGGAAAGCCGATTCGATGCAAAGCAGCAATCT-TAAGAAAAGCAGGAGAACCA 207
Query 112 TTGGTGATAGAAGAGATCCATGTGGATCCACCTCAAGCTTACGAAGTTAGGATTAAGATC 171
|||||||||||||||||||| || ||||||||||||||||||||||| || || || ||
Sbjct 208 TTGGTGATAGAAGAGATCCAAGTTGATCCACCTCAAGCTTACGAAGTCAGAATCAAAATT 267
Query 172 ATATGTACATCTTTATGTCACACCGATGTTTCTTTCTGGAAAGTAGAAAGTGGACCGCTT 231
|||| || ||| |||||||||| |||||| ||||||||||| |||| ||||||||||||
Sbjct 268 TTATGCACTTCTCTATGTCACACGGATGTTACTTTCTGGAAACTAGACAGTGGACCGCTT 327
Query 232 GTAAGGTTTCCTATGATTCTAGGACACGAAGCAGTCGGTGTGATCGAGAGTATTGGTGAA 291
| ||| ||||||| ||||||||| || ||||||||||||||| ||||||||||||| |||
Sbjct 328 GCAAGATTTCCTAGGATTCTAGGTCATGAAGCAGTCGGTGTGGTCGAGAGTATTGGAGAA 387
Query 292 CCTGT-GAATGGATTTCAACAAGGTGACGTCGTTTTGCCAGTGTTTCACCCTCATTGTGA 350
|| || |||||| ||||||| ||||||||||||||||||||||| ||||| |||||
Sbjct 388 AAGGTAGAC-GGATTTAAACAAGGCGACGTCGTTTTGCCAGTGTTTCATCCTCAATGTGA 446
Query 351 AGAATGTAGAGACTGCAAATCCTC-AAAGAGCAACTGGTGTGCAAGATTTGCCGATGATT 409
|||||| | ||| |||| ||| || ||||||||||||||| ||| || | | | ||||
Sbjct 447 AGAATGCAAAGAGTGCATATC-TCCAAAGAGCAACTGGTGCACAAAATATACAAACGATT 505
Query 410 -TTGCATCAAACACAAGACGGTATGGAATGACTTCAGGATTCAAAGACTCTTCG-GGAGA 467
|| ||||||||||||||| ||||||||||||||| ||||||| |||||| || |||||
Sbjct 506 ATTT-ATCAAACACAAGACGATATGGAATGACTTCAAGATTCAAGGACTCT-CGTGGAGA 563
Query 468 AGATATTAACCATTTTC-TCTTTGTCTCAAGTTTTTCTGAATATACCGTCGTAGATATCG 526
||||||| ||||||| | ||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 564 AGATATTCACCATTT-CATCTTTGTCTCAAGTTTTACTGAATATACCGTTGTAGATATCG 622
Query 527 CACATCTCGTCAAAATGTCTCCTGATATTCCGGTTGATAAAGCAGCATTGCTCAGCTGCG 586
|||||||||||||||| |||||||| ||||| ||||||| ||| || ||||||||||||
Sbjct 623 CACATCTCGTCAAAATATCTCCTGAAATTCCCGTTGATATAGCGGCCTTGCTCAGCTGCA 682
Query 587 GTGTTTCCACAGGAATTGGAGCAGCTTGGAAAGTGGCTAACATGGAACAAGGCTCCACCA 646
||||| |||||||| ||||||| || |||||||||||| || | || |||| |||||
Sbjct 683 GTGTTGCCACAGGACTTGGAGCTGCGTGGAAAGTGGCTGACGTAGAGGAAGGTTCCACTG 742
Query 647 TTGC-ACTTTTTGGCCTTCGTGCTGTTGGACTTGCGGTAT-CA-AT----T----TTGCG 695
| | | | ||||||||| ||||||||||||| ||||| | || | | |||||
Sbjct 743 TCGTTA-TCTTTGGCCTTGGTGCTGTTGGACTAGCGGT-TGCAGAAGGAGTCAGATTGCG 800
Query 696 TGGAGCCGGCAAGA-TCATTGGTGTTGATCTCAATGCTGAAAAATTCGACCTAGGTAAGA 754
|||||||| ||| | |||| ||||| ||||||||| | | ||||| || ||||||| |
Sbjct 801 TGGAGCCG-CAAAAATCATCGGTGTGGATCTCAATCCCGCGAAATTTGAAATAGGTAA-A 858
Query 755 A-ATTTGGTTTCACGGATTTCATCAATCCTACCTTGTGTGGAAAAAAGA-AGATTAGCGA 812
| |||||| |||| ||||| |||||||| | |||||||| | |||| | ||||||||
Sbjct 859 AGATTTGGAATCACAGATTTTGTCAATCCTGCTTTGTGTGGGGAGAAGACA-ATTAGCGA 917
Query 813 G 813
|
Sbjct 918 G 918
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62600079615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5