BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492665
Length=1481
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22080.1 | Symbols: RHS14 | root hair specific 14 | chr4:117... 2283 0.0
AT4G22090.1 | Symbols: | Pectin lyase-like superfamily protein... 1812 0.0
> AT4G22080.1 | Symbols: RHS14 | root hair specific 14 | chr4:11700555-11702666
REVERSE LENGTH=1477
Length=1477
Score = 2283 bits (1236), Expect = 0.0
Identities = 1405/1486 (95%), Gaps = 14/1486 (1%)
Strand=Plus/Plus
Query 1 CACCTTCTAATCTTTCCGACACAATCTCTCATCTAAACACTCCCTTAAGTACTTGCCCAT 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 CACCTTCTAATCTTTCCGACACAATCTCTCATCTAAACACTTCCTTAAGTACTTGCCCAT 60
Query 61 CTTTTCTCTTTTCTTAG--T--ATCCCTACTCAAACCTTAAACCCACCCGACCATGACTC 116
||||||||||||||||| | ||||||||||||||| ||||||||||| ||||||||||
Sbjct 61 CTTTTCTCTTTTCTTAGTATCGATCCCTACTCAAACCATAAACCCACCCAACCATGACTC 120
Query 117 TTTTCACCGTTTCTTGCCTCCTCGTGGCACTATTCTTATGTCAGTCATTGGTCCATGCCG 176
||||||||||||| ||||||||||||| ||||||||||||||| || |||||||||||||
Sbjct 121 TTTTCACCGTTTCGTGCCTCCTCGTGGTACTATTCTTATGTCATTCCTTGGTCCATGCCG 180
Query 177 TAAATAATGGTTATTACGGGTATACCCCCACGGTTGCCAACTACCTCCCCGAGAAACCTC 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 181 AAAATAATGGTTATTACGGGTATACCCCCACGGTTGCCAACTACCTCCCCGAGAAACCGC 240
Query 237 AGAACATCATGAATCCGGTGGACTCCTGTTGGCGGCTCAAGTCTGACTGGGCTGTCAATC 296
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 241 AGAACATCATGAATCCGGTGGACTCCTGTTGGCGGCTCAAGTCTGACTGGGCTGCCAATC 300
Query 297 GTAAAGACCTAGCGAATTGCGTGGTTGGGTTTGGTTCATCTACCTTGGGCGGCAAGAAAG 356
|||||||||||||| ||||||||||||| || |||||||||||||||||||| |||||||
Sbjct 301 GTAAAGACCTAGCGGATTGCGTGGTTGGATTCGGTTCATCTACCTTGGGCGGAAAGAAAG 360
Query 357 GTAAGTTATATGTTGTCACAAACCCTAACGACAATGCACAAAACCCTCAACCAGGTTCTT 416
|||| ||||| ||||||||||||||| ||||||||||||| || ||||||||||||||||
Sbjct 361 GTAATTTATACGTTGTCACAAACCCTTACGACAATGCACAGAATCCTCAACCAGGTTCTT 420
Query 417 TGCGGTACGGCGTGATCCAAGCCAAGCCATTGTGGATCACTTTCGCTAAGGATATGGTCA 476
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 421 TGCGGTACGGCGTGATCCAAGCCAAACCATTGTGGATCACTTTCGCTAAGGATATGGTCA 480
Query 477 TAACCCTAGAGAATGAGCTCATGGTCAATAGCTATAAGACCATTGATGGGAGAGGGGCAA 536
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 481 TAACCCTAGAAAATGAGCTCATGGTCAATAGCTATAAAACCATTGATGGGAGAGGGGCAA 540
Query 537 AAGTGGAAATTGCATACGGACCATGCATTACCATACAAGACGTGACGAACGTAATCGTGC 596
|||| ||||| ||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 541 AAGTAGAAATCGCATACGGACCATGCATCACGATACAAGACGTGACGAACGTAATCGTGC 600
Query 597 ACGGGATCAGTATCCATGACTGCAAACCAGGGAAGTACGGAATGGTGAGGAGCAGCCCGA 656
|||||||||| ||||| ||||||||||| ||||||||||| ||||||||||| |||||||
Sbjct 601 ACGGGATCAGCATCCACGACTGCAAACCGGGGAAGTACGGTATGGTGAGGAGTAGCCCGA 660
Query 657 CGCATGTCGGTCACCGTCAGGGATCGGACGGTGATGCTATCGCTATTTTTGGGTCGTCGA 716
||||||| ||||||||| ||||||||||||||||||| ||||||||||| || || ||||
Sbjct 661 CGCATGTTGGTCACCGTAAGGGATCGGACGGTGATGCGATCGCTATTTTCGGTTCATCGA 720
Query 717 ATGTTTGGATCGATCATTGTTACCTAGCAAGTTGTACGGACGGGCTCATCGATGTGATCC 776
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 721 ATATTTGGATCGATCATTGTTACCTAGCGAGTTGTACGGACGGGCTCATCGATGTGATCC 780
Query 777 ATGCTTCCACGGGAATCACAATTTCCAACAACTATTTCACTCAGCATGACAAAGTGATGT 836
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 781 ATGCTTCCACGGGAATCACTATTTCCAACAACTATTTCACTCAGCATGACAAAGTGATGT 840
Query 837 TGCTTGGACACAACGATGATTTTGTTCAAGATGTGAACATGAAAGTGACCGTGGCATTCA 896
| ||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 841 TACTTGGGCACAACGATGATTTTGTGCAAGATGTGAAAATGAAAGTGACCGTGGCATTCA 900
Query 897 ATCATTTTGGACCAGGACTTGTCGAGAGAATGCCAAGGGTAAGACGAGGGTACGCTCATG 956
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 901 ATCATTTTGGACCAGGACTTGTGGAGAGAATGCCAAGAGTAAGACGAGGGTACGCTCATG 960
Query 957 TAGCAAACAATAGATACGATAAATGGATAATGTATGCAATTGGTGGTAGCGCCGATCCCA 1016
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 961 TGGCAAACAATAGATACGATAAATGGATAATGTATGCAATTGGTGGTAGCGCCGATCCAA 1020
Query 1017 CCATTTTTAGTGAAGGCAACTATTTCATTGCTTCTGATAAATCTAACAGCAAGGAGGTGA 1076
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1021 CCATTTTTAGTGAAGGCAACTATTTCATTGCTTCTGATAAATCTAACAGCAAAGAGGTGA 1080
Query 1077 CGAAGAGAGAAGTAAAAGGAGGATGGAACAATTGGAGATGGAGAACCTCAAAAGATGTTT 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 CGAAGAGAGAAGTAAAAGGAGGATGGAACAATTGGAGATGGAGAACCTCAAAAGATGTTT 1140
Query 1137 TCAAGAACGGAGCTTACTTCGTACCTTCTGGTTATGGCAGCATTTCGCTACCGTATAGTT 1196
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1141 TCAAGAACGGAGCTTACTTCGTACCTTCTGGTTATGGCAGCATTTCGCTACCTTACAGTT 1200
Query 1197 CTGCTCAGCGATTCACAGTCGCTCCAGGAAACTTGGTTCCTTCTTTAACCGCAGACGCTG 1256
||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1201 CTGCTCAGCGATTCACAGTAGCTCCGGGAAACTTGGTTCCTTCTTTAACTGCAGACGCTG 1260
Query 1257 GCCCTCTAAACTGCAACCGCAACGGCCCTTGTTATTAGTATACATGA-TCTTTTCACGAG 1315
||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||
Sbjct 1261 GCCCTCTAAACTGCAACCGCAACGGCCCTTGTTATTAGTATTCAT-ACTCTTTTCACGAG 1319
Query 1316 ATTCATCTAATTTCTGGTATAGCACGTTACTTTTCCTTTTTTACTTAGTTGTGTTTGATC 1375
|| |||||||||||||||||||||||||| ||||| ||||||||||||||| | |
Sbjct 1320 ATGCATCTAATTTCTGGTATAGCACGTTAATTTTCTTTTTTTACTTAGTTGA-----A-C 1373
Query 1376 TATATATGTTTTGGTCTGGATTTGCTACACATGGATCACTGGTTATGAAAGATGAGAAAC 1435
|||||||||||||||||||| |||||||| || | ||||||||||||||||||||||||
Sbjct 1374 TATATATGTTTTGGTCTGGACTTGCTACA--TGTAGCACTGGTTATGAAAGATGAGAAAC 1431
Query 1436 GACAAGAGGTTGTAAGAAAAGAATGCATATTTTGTTTATTTTGTGT 1481
| |||||| |||||||||||||||| | ||||| ||||||||||||
Sbjct 1432 GTCAAGAGTTTGTAAGAAAAGAATGAAAATTTTATTTATTTTGTGT 1477
> AT4G22090.1 | Symbols: | Pectin lyase-like superfamily protein
| chr4:11704003-11706042 REVERSE LENGTH=1185
Length=1185
Score = 1812 bits (981), Expect = 0.0
Identities = 1123/1191 (94%), Gaps = 12/1191 (1%)
Strand=Plus/Plus
Query 110 ATGACTCTTTTCACCGTTTCTTGCCTCCTCGTGGCACTATTCTTATGTCAGTCATTGGTC 169
||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGACTCATTTCACCGTTTCGTGCCTCCTCGTGGCACTATTCTTATGTCAGTCCTTGGTC 60
Query 170 CATGCCGTAAATAATGGTTATTACGGGTATACCCCCACGGTTGCCA-ACTACCTCC-CCG 227
||||||| | |||| |||||||||||||||| |||| ||| || || ||||| || |||
Sbjct 61 CATGCCGCATATAACGGTTATTACGGGTATAGCCCCGCGGCTG-CACCCTACC-CCGCCG 118
Query 228 -AGAAACCTCAGAACATCATGAATCCGGTGGACTCCTGTTGGCGGCTCAAGTCTGACTGG 286
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 AAG-AACCTCAGAACATCATGAATCCGGTGGACTCCTGTTGGCGGCTCAAGTCTGACTGG 177
Query 287 GCTGTCAATCGTAAAGACCTAGCGA-ATTGCGTGGTTGGGTTTGGTTCATCTACCTTGGG 345
| |||||||||| |||||||||| | |||||| |||||||||||||||||||||||||||
Sbjct 178 GATGTCAATCGTGAAGACCTAGC-AGATTGCGCGGTTGGGTTTGGTTCATCTACCTTGGG 236
Query 346 CGGCAAGAAAGGTAAGT-TATATGTTGTCACAAACCCTAACGACAATGCACAAAACCCTC 404
|||||||||||||| | |||||||||||||||||||| ||||||||||||||||||| |
Sbjct 237 TGGCAAGAAAGGTAA-TATATATGTTGTCACAAACCCTTACGACAATGCACAAAACCCCC 295
Query 405 AACCAGGTTCTTTGCGGTACGGCGTGATCCAAGCCAAGCCATTGTGGATCACTTTCGCTA 464
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 296 ACCCAGGTTCTTTGCGGTACGGCGTGATCCAAGCCAAGCCATTGTGGATTACTTTCGCTA 355
Query 465 AGGATATGGTCATAACCCTAGAGAATGAGCTCATGGTCAATAGCTATAAGACCATTGATG 524
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 356 AGGATATGGTCATAACCCTAGCGAATGAGCTCATGGTCAATAGCTATAAGACCATAGATG 415
Query 525 GGAGAGGGGCAAAAGTGGAAATTGCATACGGACCATGCATTACCATACAAGACGTGACGA 584
|| ||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||
Sbjct 416 GGCGAGGGGCAAAAGTAGAAATTGCATACGGACCATGCATCACGATACAAGACGTGACGA 475
Query 585 ACGTAATCGTGCACGGGATCAGTATCCATGACTGCAAACCAGGGAAGTAC-GGAATGGTG 643
|||| || ||||| |||||||||||||| ||||||||||||||||| | | |||| ||||
Sbjct 476 ACGTCATTGTGCATGGGATCAGTATCCACGACTGCAAACCAGGGAAAT-CTGGAAAGGTG 534
Query 644 AGGAGCAGCCCGACGCATGTCGGTCACCGTCAGGGATCGGACGGTGATGCTATCGCTATT 703
|||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||
Sbjct 535 AGGAGCAGCCCGACGCATGTCGGTCACCGTAAGGGATCGGACGGTGATGCCATCACTATT 594
Query 704 TTTGGGTCGTCGAATGTTTGGATCGATCATTGTTACCTAGCAAGTTGTACGGACGGGCTC 763
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 595 TTTGGTTCGTCGAATGTTTGGATCGATCATTGTTACCTAGCGAGTTGTACGGACGGACTC 654
Query 764 ATCGATGTGATCCATGCTTCCACGGGAATCACAATTTCCAACAACTATTTCACTCAGCAT 823
|||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 655 ATCGATGTAATCCATGCTTCCACGGCAATCACTATTTCCAACAACTATTTCACTCAGCAT 714
Query 824 GACAAAGTGATGTTGCTTGGACACAACGATGATTTTGTTCAAGATGTGAACATGAAAGTG 883
||||||||||||||||| |||||||||||| ||||||| |||||||||| |||||||||
Sbjct 715 GACAAAGTGATGTTGCTCGGACACAACGATAATTTTGTGAAAGATGTGAAAATGAAAGTG 774
Query 884 ACCGTGGCATTCAATCATTTTGGACCAGGACTTGTCGAGAGAATGCCAAGGGTAAGACGA 943
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 775 ACCGTGGCATTCAATCATTTTGGACCAGGACTTGTGGAGAGAATGCCAAGGGTAAGACGA 834
Query 944 GGGTACGCTCATGTAGCAAACAATAGATACGATAAATGGATAATGTATGCAATTGGTGGT 1003
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 GGCTACGCTCATGTGGCAAACAATAGATACGATAAATGGATAATGTATGCAATTGGTGGT 894
Query 1004 AGCGCCGATCCCACCATTTTTAGTGAAGGCAACTATTTCATTGCTTCTGATAAATCTAAC 1063
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 895 AGCGCCGATCCCACCATTTTCAGTGAAGGCAACTATTTCATTGCTTCTGATAAATCTTAC 954
Query 1064 AGCAAGGAGGTGACGAAGAGAGAAGTAAAAGGAGGATGGAACAATTGGAGATGGAGAACC 1123
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 AGCAAAGAGGTGACGAAGAGAGAAGTAAAAGGAGGATGGAACAATTGGAGATGGAGAACC 1014
Query 1124 TCAAAAGATGTTTTCAAGAACGGAGCTTACTTCGTACCTTCTGGTTATGGCAGCATTTCG 1183
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 1015 TCAAACGATGTTTTCAAGAACGGAGCTTTCTTCGTACCTTCTGGTTATGGCAGCATTCCG 1074
Query 1184 CTACCGTATAGTTCTGCTCAGCGATTCACAGTCGCTCCAGGAAACTTGGTTCCTTCTTTA 1243
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1075 CTACCGTACAGTTCTGCTCAGCGATTCACAGTCGCTCCCGGAAACTTGGTTCCTTCTTTA 1134
Query 1244 ACCGCAGACGCTGGCCCTCTAAACTGCAACCGCAACGGCCCTTGTTATTAG 1294
|||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1135 ACCGCAGACGCTGGCCCTCTAAACTGCAACCGCAACGGTCCTTGTTATTAG 1185
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73041792975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5