BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492669
Length=621
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22000.1 | Symbols: | unknown protein; Has 30201 Blast hits... 776 0.0
> AT4G22000.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:11659638-11660906
REVERSE LENGTH=692
Length=692
Score = 776 bits (420), Expect = 0.0
Identities = 569/635 (90%), Gaps = 34/635 (5%)
Strand=Plus/Plus
Query 1 CGCGTTCTCAAAGTTGCTCTCACAATCAAAAGCTTCTCCGATCTCCAATCATATAAGTTA 60
|||||||||||||||||||| | | | || ||||||||||||||| |||||||||
Sbjct 78 CGCGTTCTCAAAGTTGCTCT--C-A-C---AG--TCTCCGATCTCCAATTTTATAAGTTA 128
Query 61 TGGCTGGGAAAGCTGCAGAAGCTGTGGCGAAGACAGTGACGGGGTTTCAATATCCATGGA 120
||||||| |||||||||||||||||||| ||||||||||| ||||||||| |||||||||
Sbjct 129 TGGCTGGAAAAGCTGCAGAAGCTGTGGCAAAGACAGTGACAGGGTTTCAACATCCATGGA 188
Query 121 GGGCGAAACTCGATAAGTACAGAACCGAGCTGACAAAAGGCGTGTGGGGTTATTGGGAGA 180
||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||
Sbjct 189 GGGCGAAACTCGATAAGTACAGAACCGAGTTGACGAAAGGTGTGTGGGGTTATTGGGAGA 248
Query 181 TGGGAGCATGGAAACCGTTAGGGATAAGTGCACGAAGGAGGGCGATGCTGAGGAAAGAAG 240
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 249 TGGGAGCATGGAAACCGTTAGGGATAAGTGCACGAAGGAGGGCTATGCTGAGGAAAGAAG 308
Query 241 TGTTGACTAATGGAGAAGACTGGCCTTATGATCCAGAGAGGAAAGCTATGAGGACAAAGA 300
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 309 TGTTGACTAATGGAGAAGATTGGCCTTATGATCCAGAGAGGAAAGCTATGAGGACAAAGA 368
Query 301 GGAAAGGGCATAAATGCGATAGGATTTCGGCTGAGAAAAGAGAGAACACTGCGAAACTTA 360
|||||||||||||||| ||||| ||||| |||||||||||||||||||||||||| ||||
Sbjct 369 GGAAAGGGCATAAATGTGATAGAATTTCAGCTGAGAAAAGAGAGAACACTGCGAAGCTTA 428
Query 361 TGCTGAAGATGCCTCAGATGCTGCTTGATTACaagaagagaaggtgggagaagaagatga 420
|| ||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||
Sbjct 429 TGTTGAAGATGCCTCAGATGTTGCTTGATTATAAGAAGAGAAGGTGGGAAAAGAAGATGA 488
Query 421 aggaagaagagaaagctaaagaagaCAAGTAATTGATTTGTTGAGATCATTGATGAATAA 480
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||
Sbjct 489 AGGAAGAAGAGAAAGCTAAAGAAGACAAGTAATTGATTTGTTGAGATCAT-GATTACTA- 546
Query 481 TA-ATCATTTAGTTTGTTGA-TCTCA-TGAA---A-TCTG--GAT-TT-TGAAATCTTGG 529
|| | | || ||| | ||| | | | || | | || ||| || |||||||||||
Sbjct 547 TAGA-C-TTG-GTT-GATGAATAAGAAT-AATTTAGTTTGTTGATCTTATGAAATCTTGG 601
Query 530 --G-TTTAAGAGCTCAAGTTTGCTTCTGATATGCttttgtatgatgtttttttgtttatg 586
| ||||||| | |||||||||||||||||| |||||||||||||||||||| |||
Sbjct 602 AAGGTTTAAGATCACAAGTTTGCTTCTGATATACTTTTGTATGATGTTTTTTT----ATG 657
Query 587 tttgtttttAACAGAACCCAAACGTGGTTGTGGTT 621
|||||||||||||||||||||| ||| ||||||||
Sbjct 658 TTTGTTTTTAACAGAACCCAAAAGTGTTTGTGGTT 692
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29939551612
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5