BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492672
Length=666
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21970.1 | Symbols: | Protein of unknown function, DUF584 |... 983 0.0
> AT4G21970.1 | Symbols: | Protein of unknown function, DUF584
| chr4:11653380-11654136 FORWARD LENGTH=663
Length=663
Score = 983 bits (532), Expect = 0.0
Identities = 623/667 (93%), Gaps = 5/667 (1%)
Strand=Plus/Plus
Query 1 TCTGTCTCTCATTTGCCAGCAAAGAGAGATTGTTTAATGTTGTTTATGGTTCACATTTTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTGTCTCTCATTTGCCAGCAAAGAGAGATTGTTTAATGTTGTTTATGGTTCACATTTTT 60
Query 61 ATACAATATCACATTTTCACTGAATCTTCCTCTGCGTCTCTCAGAATCACTTAGTTGAAG 120
|||||||||||||||||||||||||||||||||||||||||||| | | || | |
Sbjct 61 ATACAATATCACATTTTCACTGAATCTTCCTCTGCGTCTCTCAGGAGGAAGAAGATCATT 120
Query 121 CAGAAGAAGCATATATTGAAAGGGTTTTGTTGAGTGACAATGGAAGGGGGAGAAGAGTTT 180
||| |||||| | ||| |||||||||||||||| | |||||||||||||||||||||||
Sbjct 121 CAGTTGAAGCACACATTTAAAGGGTTTTGTTGAGAGGCAATGGAAGGGGGAGAAGAGTTT 180
Query 181 CAAGAAGAAGAAGTGTGGTCAGTTTTAAGAGAAAGTGAAACTCCAGGTCCTGAAATGAAA 240
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 181 CAAGAAGAAGAAGTGTGGTCAGTTTTGAGAGAAAGTGAAACTCAAGGTCCTGAAATGAAA 240
Query 241 ATGTCCAAAAGTAACAATCTCTTCTCAGCCTCTTCTTCATCTTCTGC-ACGGTACATTCC 299
||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||
Sbjct 241 ATGTCCAAAAGTAACAATCTCTTCTCAGCCTCTTCCTCATCTTCTGCGA-GGTACATTCC 299
Query 300 TAAGGGCAACGAGGTCTCTGGAGGGGTAAAACAGTCATCTGCTCCAATGAATATTCCTGA 359
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 300 TAAAGGCAACGAGGTCTCTGGAGGGGCAAAACAGTCATCTGCTCCAATGAATATTCCTGA 359
Query 360 CTGGTCCAAGGTTTATGGGTTTTCAAAGAAGAACACAAGGAGCCACTTGCATTTGTGGGC 419
|||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||
Sbjct 360 CTGGTCCAAGGTTTATGGGTATTCAAAGAAGAACACAAGCAGCCACTTGCATTCATGGGC 419
Query 420 CATtgatgatgatgatgatgaAGGCTCAATGGTTCCTCCACATGAATTGGTAGCAAAAAG 479
|| | ||| ||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 420 CA-T--TGACGATGATGATGAAGGCTCAATGGTTCCTCCACATGAGTTAGTAGCAAAAAG 476
Query 480 GCTTGCAAGAACGCAGATCTCATCGTTCTCTATGTGTGAAGGAATCGGAAGAACACTCAA 539
||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||
Sbjct 477 ACTTGCAAGAACGCAGATCTCATCATTCTCTATGTGCGAAGGAATCGGAAGAACGCTCAA 536
Query 540 AGGAAGAGATCTCAGCAAAACAAGAAATGCTATCTTGAGAAGAACTGGTTTCTTGGAATC 599
||||||||||||||||||||||||||| ||| |||| | |||||||||||||||||||||
Sbjct 537 AGGAAGAGATCTCAGCAAAACAAGAAACGCTGTCTTAACAAGAACTGGTTTCTTGGAATC 596
Query 600 GAATATCACATCTTCATCAACAACATCACCACCATAGTTATGGCATGGCATGGAGCATGG 659
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 597 GAATATCACATCTTCATCAACAACATCACCACCATAGTTTTGGCATGGCATGGAGCATGG 656
Query 660 GTGGATG 666
||||||
Sbjct 657 CTGGATG 663
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32200088227
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5