BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492673
Length=1530
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21960.1 | Symbols: PRXR1 | Peroxidase superfamily protein |... 2359 0.0
> AT4G21960.1 | Symbols: PRXR1 | Peroxidase superfamily protein
| chr4:11646174-11648462 REVERSE LENGTH=1582
Length=1582
Score = 2359 bits (1277), Expect = 0.0
Identities = 1457/1540 (95%), Gaps = 27/1540 (2%)
Strand=Plus/Plus
Query 3 AAAATAAAAATAAAGAAAACTCCATTTTCCTTTATTTAAGGAGGCTGCATTGCTTGCTCA 62
|||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 41 AAAA-ATAAATAAAGAAAACTCCATTTCCCTTTATTTAAGGAGGCTGCATTGCTTGCTCA 99
Query 63 CTGACTCAACTCAAGA---GTG-A---AGA-AAGAAAGAGACaaaaaaaaaaTGGGAGGC 114
|||||||||||||||| ||| | ||| |||||||| | | ||||||||||||||||
Sbjct 100 CTGACTCAACTCAAGAGTGGTGTAGTGAGAGAAGAAAGATAGAGAAAAAAAATGGGAGGC 159
Query 115 AAAGGTGTGATGATGGTGGCGATACTTTGCCTTTGGGCACTCTCTGCAACATCTGAAGCA 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 160 AAAGGTGTGATGATGGTGGCGATACTTTGCCTTTGGGCACTCTCTGCAACATCTGAAGCA 219
Query 175 GTAACAGAGGCGGAGCCAGGTTTGATGATGAACTTCTACAAGGACACGTGTCCTCAGGCT 234
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 220 GTAACAGAGGCTGAGCCAGGTTTGATGATGAACTTCTACAAGGACACGTGTCCTCAGGCC 279
Query 235 GAAGATATCATCCGTGAACAAGTCAAACTCCTCTACAAACGCCACAAGAACACCGCTTTC 294
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 280 GAAGACATCGTCCGTGAACAAGTCAAACTCCTCTACAAACGCCACAAGAACACCGCTTTC 339
Query 295 TCTTGGCTCCGTAACATCTTCCACGACTGCGCCGTCGAGTCGTGTGATGCGTCGCTTTTG 354
||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct 340 TCTTGGCTCCGTAACATCTTCCATGACTGCGCCGTTGAGTCATGTGATGCGTCGCTTTTG 399
Query 355 CTGGATTCGACAAGAAGAGAGCTAGGAGAGAAAGAACATGACAGGAGCTTCGGACTGAGA 414
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 400 CTGGATTCGACAAGAAGAGAGCTAGGAGAGAAAGAACACGACAGGAGCTTCGGACTTAGA 459
Query 415 AACTTCAGGTACATCGAGGAGATCAAGGAAGCTCTTGAGAGGGAGTGTCCTGGTGTTGTC 474
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 460 AACTTTAGGTACATCGAGGAGATCAAGGAAGCTCTCGAGAGGGAGTGTCCTGGTGTTGTC 519
Query 475 TCATGTTCCGACATTCTCGTCTTGTCGGCAAGAGAAGGAATCGAAGCAGTGGGAGGACCA 534
|||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct 520 TCATGTTCTGACATTCTCGTCTTGTCCGCAAGAGAAGGCATCGAAGCAGTAGGAGGACCT 579
Query 535 TATATTCCTTTGAAGACAGGAAGGAGAGATGGACTTAAAAGCAGGACCGATATGCTTGAG 594
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 580 TATATTCCTTTGAAGACAGGAAGGAGAGATGGACTTAAAAGCAGGACGGATATGCTCGAG 639
Query 595 TCATATCTTCCCGACCACAACGAGAGTATCTCCGTCGTTCTTGACAAGTTCAAATCCATC 654
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 640 TCATATCTTCCCGACCACAACGAGAGTATCTCCGTCGTTCTTGAAAAGTTCAAATCCATC 699
Query 655 GGAATCGACACTCCCGGCCTCGTTGCTCTCCTAGGGTCACACAGCGTGGGAAGAACTCAT 714
|| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 700 GGTATCGACACTCCCGGCCTCGTCGCCCTCCTAGGGTCACACAGCGTGGGAAGAACTCAC 759
Query 715 TGTGTCAAGCTGGTCCATCGTTTGTACCCTGAGGTGGATCCGTCCTTGAACCCGGACCAC 774
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 760 TGTGTCAAGCTGGTCCATCGTTTGTACCCTGAGGTGGACCCGTCCTTAAACCCGGACCAC 819
Query 775 GTCCCTCACATGCTACACAAGTGTCCTGACTCTATCCCTGACCCAAAGGCGGTCCAGTAC 834
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 820 GTCCCTCACATGCTACACAAGTGTCCTGACTCGATCCCTGACCCAAAGGCGGTCCAGTAC 879
Query 835 GTGCGTAACGACCGTGGCACCCCCATGGTGCTAGACAACAATTACTACCGTAACATCCTA 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 880 GTGCGTAACGACCGTGGCACCCCCATGGTGCTAGACAACAATTACTACCGTAACATCCTA 939
Query 895 GACAACAAGGGTTTGCTTCTTGTGGACCATCAGCTCGCACACGACAAAAGAACTAGACCA 954
||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||
Sbjct 940 GACAACAAGGGTTTGCTCCTTGTGGACCATCAGCTCGCACACGACAAACGAACCAGACCA 999
Query 955 ATTGTTAAGAAGATGGCTAAGGACCAGGCCTACTTCTTCAAGGAGTTCACTAGGGCAATC 1014
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1000 ATCGTTAAGAAGATGGCTAAGGACCAGGCCTACTTCTTCAAGGAGTTCACTAGGGCAATC 1059
Query 1015 CAGATCTTATCCGAGAACAACCCTTTGACTGGCTCTAAGGGTGAGATCAGGAAGCAATGC 1074
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1060 CAGATCTTATCCGAGAACAACCCCTTGACTGGCTCTAAGGGTGAGATCAGGAAGCAATGT 1119
Query 1075 AATCTTGCAAACAAGAACCATTGAAGTTGGAAAAAGTGAGAAAGGCAGAGGCTCTGGTGT 1134
||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 1120 AATCTCGCAAACAAGAACCATTGAAGTTGGAAAAAGTGAGAAAGACAGGGGCTCTGGTGT 1179
Query 1135 GTTGGGATCTCTGCTTGGTACGAACTAAGATGAATaaaaaaaaTCTTTTAAGTTAAATCA 1194
|||| | |||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 1180 GTTGAGTTCTCTGCTTGGTACGAACCAAGATGAATAAAAAAA-TCTTTTAAGTTAAATCA 1238
Query 1195 AAGAAAGGGTGATGATGAATGCATCATGGTGGTGACCACATCCTTCTTTTGTGTGTTCTT 1254
|||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||
Sbjct 1239 AAGAAAGGGTGATGATGAATACATCATGGTAGTGACCACCTCCTTCTTTTGTGTGTTC-- 1296
Query 1255 GTTGCAGCCTTAATGCTTTAATTATGATGTTTAGTGGCTTTGAGTTATTTAATCTAAATG 1314
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1297 -----AGCCTTAATGCTTTAATTATGATGTT-AGTGGCTTTGAGTTATTTAATCTAAATG 1350
Query 1315 TTGGCTCTTCGTTGATTTTGGGTTTGTGGTGGGGATGAGATAATGATAATGGAAAGGATG 1374
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 1351 TTGGCTCTTCGTTGATTTTGGGTTTGTGGTGGGGGTGATATAATGATAATGGAAAGGATG 1410
Query 1375 TATGATATGATGGATGGTGTTTGGGTA--ATTGTATGACGATGTAATAATAAGTAAACA- 1431
||||||||||||||||||||| ||||| || ||||||||||||||| |||||||||||
Sbjct 1411 TATGATATGATGGATGGTGTT-GGGTATCAT-GTATGACGATGTAATGATAAGTAAACAT 1468
Query 1432 GTCGGAATCTTTTCTATAACTTGTTCAACATGCATGATATATATATAAGTACTGTGTTTG 1491
||| ||||||||| |||| |||||||||||||||| |||| ||| | ||||||||| ||
Sbjct 1469 GTCCGAATCTTTTG-ATAATTTGTTCAACATGCATGGTATACATA-A-GTACTGTGTATG 1525
Query 1492 G-TGATATCGATCTATTTTACTGATCTCACTAAAGATTTT 1530
| |||||||||||||||||||||||||||| |||||||||
Sbjct 1526 GGTGATATCGATCTATTTTACTGATCTCACCAAAGATTTT 1565
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75501619680
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5