BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg492675

Length=670
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G21930.1 | Symbols:  | Protein of unknown function, DUF584 |...   826    0.0  
  AT4G21926.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   250    1e-65


> AT4G21930.1 | Symbols:  | Protein of unknown function, DUF584 
| chr4:11639757-11640583 FORWARD LENGTH=827
Length=827

 Score =  826 bits (447),  Expect = 0.0
 Identities = 613/689 (89%), Gaps = 28/689 (4%)
 Strand=Plus/Plus

Query  1    TAAATCAAAGCGGGTATACACTTTTCTTAGGTAAAAAAGAGATTTATATGGGCAAAGGTC  60
            ||||||| |||||||||||| |||||||||||||  ||||||   |||||||||||||||
Sbjct  92   TAAATCACAGCGGGTATACAATTTTCTTAGGTAACCAAGAGA--GATATGGGCAAAGGTC  149

Query  61   GGAGTTTACCGATTAGTCGGAGCGAGCGATTTCTTGGAAGCCATCAGCA-----AT---C  112
            |||| |||||||||||||| |||||| | |||||||| |||||||||||     ||   |
Sbjct  150  GGAGCTTACCGATTAGTCGAAGCGAGAGGTTTCTTGGGAGCCATCAGCAGTCCGATGACC  209

Query  113  --C--GTGGACGGAGTAACCACCGTCGAGCTGGAGCTCATGGAAGAGGATGTCTGGTCGG  168
              |  |||||||||| ||| ||| | ||||||||||||||||||||||||||||||||||
Sbjct  210  ATCATGTGGACGGAGAAACTACCTTTGAGCTGGAGCTCATGGAAGAGGATGTCTGGTCGG  269

Query  169  TGGTCGAGCCTGACGAACCAACGGAAGTAGGCGCGTGGATCACACGCTCTCTCGAGGGGA  228
            ||||||||||||||||||||| |||| |||| ||||||| | |||||||||||||||  |
Sbjct  270  TGGTCGAGCCTGACGAACCAAAGGAACTAGGTGCGTGGAACGCACGCTCTCTCGAGGCCA  329

Query  229  CTGACAATGAATGGAGACGGAACGGAGGCCGCGTGAGTGACCTGACCG-TCTCGAGTGAA  287
             || || ||||||||||||||| ||||| ||||||||||||||||||| || ||||||| 
Sbjct  330  GTGGCAGTGAATGGAGACGGAAGGGAGGACGCGTGAGTGACCTGACCGTTC-CGAGTGAT  388

Query  288  GGGCGGAGGAAGAGACACGTGGCGACTTCTGCGCCGGTGAAAGTTCCTGACTGGAGCAAG  347
            || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  389  GGACAGAGGAAGAGACACGTGGCGACTTCTGCGCCGGTGAAAGTTCCTGACTGGAGCAAG  448

Query  348  ATCCTAAAGGTGGAGTCCATCAAGTCAATGCATAATAATAATAATGAT---GAT---GCT  401
            |||||||||||||||||| ||||||||||||||||||||||||| |||   |||   |||
Sbjct  449  ATCCTAAAGGTGGAGTCCGTCAAGTCAATGCATAATAATAATAACGATAATGATAATGCT  508

Query  402  GACGCGGCGGTTTTTAATTGGGGGAGTGAGATAGTGCCGCCTCATGAATACGTGGCCGCG  461
            |||| ||||| || | |||||| ||||| ||| || ||||||||||||||||||||||||
Sbjct  509  GACGTGGCGGATTGTGATTGGGAGAGTGCGATGGTACCGCCTCATGAATACGTGGCCGCG  568

Query  462  CGTAGCCGTAACGGTGACGGTAGTTCGTCGGTGTTTTTGGGCGTGGGGAGGACGTTAAAG  521
            ||||||||||||||||||||| ||||||| ||||||||||||||||| || |||||||| 
Sbjct  569  CGTAGCCGTAACGGTGACGGTGGTTCGTCCGTGTTTTTGGGCGTGGGAAGAACGTTAAAA  628

Query  522  GGACGTGACATGAGACGGGTCAGAGACGCCGTGTGGAGACAAACCGGGTTTTATGGTTAA  581
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  629  GGACGTGACATGAGACGGGTCAGAGACGCCGTGTGGAGCCAAACCGGGTTTTATGGTTAA  688

Query  582  TTTTACGTAATTAATTTGATCATTAATATTAGATTATAGTAGTAGTATATAATTTGTCCA  641
            |||||||||||||||||||||||||||||| ||||   |||||| |||  | ||||||||
Sbjct  689  TTTTACGTAATTAATTTGATCATTAATATTTGATT---GTAGTA-TATG-A-TTTGTCCA  742

Query  642  TAGAGTTGGAGTAATTAATTAAGCACTAT  670
            |||||||| ||||||||||||||||||||
Sbjct  743  TAGAGTTGAAGTAATTAATTAAGCACTAT  771


> AT4G21926.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; Has 30201 Blast 
hits to 17322 proteins in 780 species: Archae - 12; Bacteria 
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:11638701-11640164 
REVERSE LENGTH=664
Length=664

 Score =  250 bits (135),  Expect = 1e-65
 Identities = 216/253 (85%), Gaps = 14/253 (6%)
 Strand=Plus/Minus

Query  68   ACCGATTAGTCGGAGCGAGCGATTTCTTGGAAGCCATCAGCA-----AT---C--C--GT  115
            |||||||||||| |||||| | |||||||| |||||||||||     ||   |  |  ||
Sbjct  252  ACCGATTAGTCGAAGCGAGAGGTTTCTTGGGAGCCATCAGCAGTCCGATGACCATCATGT  193

Query  116  GGACGGAGTAACCACCGTCGAGCTGGAGCTCATGGAAGAGGATGTCTGGTCGGTGGTCGA  175
            |||||||| ||| ||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct  192  GGACGGAGAAACTACCTTTGAGCTGGAGCTCATGGAAGAGGATGTCTGGTCGGTGGTCGA  133

Query  176  GCCTGACGAACCAACGGAAGTAGGCGCGTGGATCACACGCTCTCTCGAGGGGACTGACAA  235
            |||||||||||||| |||| |||| ||||||| | |||||||||||||||  | || || 
Sbjct  132  GCCTGACGAACCAAAGGAACTAGGTGCGTGGAACGCACGCTCTCTCGAGGCCAGTGGCAG  73

Query  236  TGAATGGAGACGGAACGGAGGCCGCGTGAGTGACCTGACCGTCTC-GAGTGAAGGGCGGA  294
            ||||||||||||||| ||||| |||||||||||||||||||| || |||||| || | ||
Sbjct  72   TGAATGGAGACGGAAGGGAGGACGCGTGAGTGACCTGACCGT-TCCGAGTGATGGACAGA  14

Query  295  GGAAGAGACACGT  307
            |||||||||||||
Sbjct  13   GGAAGAGACACGT  1



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32401024815


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5