BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg492676

Length=387
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G21920.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   556    4e-158


> AT4G21920.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: N-terminal protein myristoylation; 
LOCATED IN: cellular_component unknown; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT3G20340.1); 
Has 40 Blast hits to 40 proteins in 10 species: 
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; 
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | 
chr4:11636084-11636473 REVERSE LENGTH=390
Length=390

 Score =  556 bits (301),  Expect = 4e-158
 Identities = 361/390 (93%), Gaps = 3/390 (1%)
 Strand=Plus/Plus

Query  1    ATGGGAAACTGCATATGCGTAACGGAAAAAACGACGACCTCGTGGTCAGGAGACGATAGT  60
            |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct  1    ATGGGAAACTGCATATGCGTAACGGAAAAAACGACGACGTCGTGGTCAGGAGACGATAAT  60

Query  61   GGATCATATAACAAGAGGAGGAGCAGAAGAAGATCCACCGTGGTTCAC--C-ACGACGAC  117
            ||||||||||||||||| ||||| ||||||||||||||||||||||||  | || |||||
Sbjct  61   GGATCATATAACAAGAGAAGGAGAAGAAGAAGATCCACCGTGGTTCACGACGACAACGAC  120

Query  118  GACGGAGAGAAGCTGCTCGGAGAAACAAGCAACGTTACAACATCAAGTTCGTCATCGTCT  177
            ||||||||||||||||||||||||||||||||||||||  || |||||||||||||||||
Sbjct  121  GACGGAGAGAAGCTGCTCGGAGAAACAAGCAACGTTACGTCAACAAGTTCGTCATCGTCT  180

Query  178  TGTGGGAGAAGAGAGATTAAGATAAGGATGACGAAGAAGAAACTTGAAGATCTCATGAGA  237
            | || |||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||
Sbjct  181  TCTGAGAGAAGAGAGATTAAGATAAGGATAACGAAAAAGGAACTTGAAGATCTCATGAGA  240

Query  238  AACATTGATTTGAAGAGTTTGACGGCGGAAGAGATTCTTTCTAAGTTAATTTTTGACGGT  297
            ||||||| |||||||||||| |||||||||||||||||||||||||||||||| || |||
Sbjct  241  AACATTGGTTTGAAGAGTTTAACGGCGGAAGAGATTCTTTCTAAGTTAATTTTCGAAGGT  300

Query  298  GGAGATCAAATCGGATTCTCTGCCGTCGATTTGTCGAATCACCACCAGCCGTGGAAACCG  357
            ||||| ||||||||||||||||| |||||| || ||||||||||||| || |||||||||
Sbjct  301  GGAGACCAAATCGGATTCTCTGCGGTCGATGTGACGAATCACCACCAACCATGGAAACCG  360

Query  358  GCGTTACAAAGCATACCGGAGATCGATTAG  387
            | ||| ||||||||||||||||| ||||||
Sbjct  361  GTGTTGCAAAGCATACCGGAGATGGATTAG  390



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18247192887


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5