BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492682
Length=838
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21890.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1273 0.0
> AT4G21890.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: nucleus; EXPRESSED IN: 13 plant structures;
EXPRESSED DURING: 7 growth stages; Has 14 Blast hits to 14
proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink). | chr4:11611843-11612903 REVERSE LENGTH=1061
Length=1061
Score = 1273 bits (689), Expect = 0.0
Identities = 796/847 (94%), Gaps = 10/847 (1%)
Strand=Plus/Plus
Query 1 GGGGAAGTTTGAAGAATGGATTTGCATTTGAAGAACTTGTTTGGTAGGTTTCAGGATCAA 60
|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 215 GGGGAAGTTTCAAGAATGGATTTGCATTTGAAGAACTTATTTGGTAGGTTTCAGGAACAA 274
Query 61 TTCGGGTCAGGTCCGGGTCTTGGACCTGGATCCGGTGTTTGCTTGATGAAAGTTGAAGGT 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 275 TTCGGGTCAGGTCCGGGTCTTGGACCTGGATCCGGTGTTTGCTTGATGATAGTTGAAGGT 334
Query 121 ATATCTTCCAACATTATTCAATCCATTTTTAGAGCTTCAGCTTCTTTATACAGAAGTGAG 180
||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||
Sbjct 335 ATATCTTCCAACATTATTCAATCTATATTTAGAGCTTCAGCTTCTTTATACAGTAGTGAG 394
Query 181 CCATGGAAGAGGCTCAGACCGGGTCATTTGTTCGGTGTTCGGGTTGGGAAAGACTCAGAT 240
|||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||
Sbjct 395 CCATGGAAGAGGCTCAGACCAGGTCATTTATTCGGTGTTCGGGTTGGCAAAGACTCAGAT 454
Query 241 TGGTCAGGAAAGAGACAGCCTTTTCAATGTGTTCAGTTCATAGGAGTTGGTGGTGGTGAT 300
||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 455 TGGTCGGGAAAGAGACAGCCTTTTCAATGTGTTCAGTTCATAGGAGGTGATGGTGGTGAT 514
Query 301 ATAGCTATCTATATGTATAGGTCCATGAGCTATGCACTGAAAATGACTGATGATGATTCA 360
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 515 ATAGCAATCTATATGTATAGGTCCATGAGCTATGCACTGAAAATGACTGATGGTGATTCA 574
Query 361 TGGGAAATGGCTAGAGTTCCTAATGTTGAGGTATTTAGGGTTACTTATGAGAGTGAATCG 420
|||||||||||||||| ||||||||||||||| ||||| |||||||||||| ||| ||
Sbjct 575 TGGGAAATGGCTAGAGATCCTAATGTTGAGGTCTTTAGAGTTACTTATGAGCTTGAGTCA 634
Query 421 TTCATGCTTCCTTCTAACAAGAGGATGGTTAAGTCTTTGTCTTTAGAAGTTTCTGGAACT 480
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 635 TTGATGCTTCCTTCTAACAAGAGGATGGTTAAGTCTTTGTCTTTAGAAGTTTCTGGAACT 694
Query 481 GATCGGTTTCCTG-TCATCGATGTTGCGCGGTGCATGACCTCTGGTGAGCTCCAGTTCAG 539
||||||||||| | | || |||||||||||||| ||||||||||||||||||||||||||
Sbjct 695 GATCGGTTTCC-GATTATGGATGTTGCGCGGTGTATGACCTCTGGTGAGCTCCAGTTCAG 753
Query 540 AAGCCCGACACTCGAAGAGCTGAGGCTTGTGTTTGCTGTGATGAAAGCTCTTTCTTTGGT 599
|||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 754 AAGCCCGACACTTGAAGAGCTTAGGCTTGTGTTTGCTGTGATGAAAGCTCTCTCTTTGGT 813
Query 600 TCATCCTTTGCTGCGTCAAGAGGAGAAGCAAATCAGGGGATTGCCAAGGATGATAAAGTT 659
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 814 TCATCCTTTGCTGCTTCAAGAGGAGAAGCAAGTCAGGGGATTGCCAAGGATGATAAAGTT 873
Query 660 TTCACCTTTTATCGAAACTGTCGATGTTCAGTGGCCATCAGAGATGTTTAAAGGTCATGA 719
|||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 874 TTCACCTTTTATTGAGACTGTCGATGTTCAGTGGCCATCAGAGATGGGTAAAGGTCATGA 933
Query 720 TTTTGTTGCTGTCACGGTCTCTCATCCTCCCGGTCAATCATATGAACAGAAGCGCGAAGA 779
|||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 934 TTTTGTTGCTGTTACGGTCTCACATCCTCCAGGTCAATCATATGAACAGAAGCGCGAAGA 993
Query 780 TGATGAGTTGGAAATAGTTTC-----TG---GCATGATCAATCTGCGAGTAGGTCAAGGT 831
||| ||||||||||||||||| || ||||||||||||||||||| |||||||||
Sbjct 994 TGACGAGTTGGAAATAGTTTCAGGCATGACCGCATGATCAATCTGCGAGTTGGTCAAGGT 1053
Query 832 GCAGAAG 838
| |||||
Sbjct 1054 GGAGAAG 1060
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40840361511
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5