BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492683
Length=2779
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21880.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 1441 0.0
> AT4G21880.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr4:11604986-11610651 FORWARD LENGTH=2702
Length=2702
Score = 1441 bits (780), Expect = 0.0
Identities = 856/893 (96%), Gaps = 4/893 (0%)
Strand=Plus/Plus
Query 1457 TTTGAAGGTGCATAT-ACTATGCTTGGTAATTTGAAGAATTTCAATTTGGCACCGAACTC 1515
||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1605 TTTGAAGGTGCATATAAC-ATGCTTGGTAATTTAAAGAATTTCAATTTGGCACCGAACTC 1663
Query 1516 TAGCATGTACAATTCTATAATGGCAGGATATTTCCGGGAGAAAAACGTGAACAGTGCTTT 1575
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1664 TAGCATGTACAATTCTATAATGGCAGGATATTTCCGGGAGAAAAAAGTGAACAGTGCCTT 1723
Query 1576 AAAGGTCCTCAAGGAAATGAAAGAAGCTGATGTTAAACCTGATTCCGTGACTTTTAGCTA 1635
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1724 AAAGGTCCTCAAGGAAATGAAAGAAGCTGATGTTAAACCTGATTCGGTGACTTTTAGCTA 1783
Query 1636 TCTAATAAACTATTGCGGCGAGGAGGCGACTATTGCGAAGTATTATAAGGAGATGAAGAA 1695
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1784 TCTAATAAACTATTGTGGCGAGGAGGCGACTATTGCGAAGTATTATAAGGAGATGAAGCA 1843
Query 1696 AGCAGGAGTTGAAGTTAATAAGCACGTTTACATGTCCCTTATTAAAGCATATGCATCATG 1755
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1844 AGCAGGAGTTGAAGTTAATAAGCACGTTTACATGTCCCTTGTTAAAGCATATGCATCATG 1903
Query 1756 TGGACAGTCTGAGAAGGCAAAACAGGTGCTCGTGGACCTGGAAGTTCCGGCGAAGGATCA 1815
||||||| ||| |||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 1904 CGGACAGTTTGAAAAGGCAAAACAGGTGCTCATGGACCTGGAAGTTCCGGCTAAGGATCA 1963
Query 1816 CAATGAGCTGAAAAGTGTGCTTATATCTGCTCTGGCATCAAATGGAAATATAACAGATGC 1875
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1964 CAATGAGCTGAAAAGTGTACTTATATCTGCTCTGGCATCAAATGGAAATATAACAGAGGC 2023
Query 1876 TTTAAGTATTTATGAAGAAATGAAGAAACTCGGCTGCCCCGTAGAGCCAAAAGCTAT-TA 1934
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 2024 TTTAAGTATTTATGAAGAAATGAAGAAACTCCGCTGCCCCGTAGAGCCAAAAGCTATCT- 2082
Query 1935 TATCTCTTATAGATAACTCTGATTCAAACGCAGAGTTGAGAACGTTGGTTGAACTCACTC 1994
||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 2083 TATCTCTTATAGAGAACTCTGATTCAAACGCAGAGCTGGGAACGTTGGTTGAACTCACTC 2142
Query 1995 ATGAGCTGCGTGATTATAAATTTTGGATAGATGGTTTCTTCAAAATTATTGTGTTTGCTG 2054
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2143 ATGAGCTGCGTGATTCTAAATTTTGGATAGATGGTTTCTTCAAAATTATCGTGTTTGCTG 2202
Query 2055 TTCGCAACAATAGATCAAGCTCTATTCTCGATTTGCTAGAGCAGACCAAAAACCACTTGT 2114
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 2203 TTCGCAACAATAGATCAAGCTCTATTCTGGATTTGTTAGAGCAGACCAAAAACCACTTGT 2262
Query 2115 CCAAGGATGACATCGCTGTGGAATATTGGTTTGAAGAGGTGTTTAAGTCAATAGCAGAAA 2174
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2263 CCAAGGATGACGTCGGTGTGGAATATTGGTTTGAAGAGGTGTTTAAGTCAATAGCGGAAA 2322
Query 2175 CAGAGTCTAATGATGTGAAGCTAGGGCTGGGCTTGGTGAGTTTTATGAAAGAAGAGCTTG 2234
||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 2323 CAGAGTCTAGTGATGTGAAGGTAGGGCTGGACTTGGTGAGTTTTATGAAAGAAGAGCTTG 2382
Query 2235 AGTTATGTCCTTCAAGAAAATGTCTAGATTTTCTTCTACATGCTTGTGTCAATGCCAAAG 2294
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2383 AGTTATGTCCTTCAAGAAAATGTCTGGATTTTCTTCTACATGCTTGTGTCAATGCCAAAG 2442
Query 2295 ATAAGCAGAATGCTCTACTGGTATGGAAAGAGTACCAATTTGCAGAACTTCCT 2347
||||||||| ||||||||||||||| |||||||||||| |||||||||||||
Sbjct 2443 ATAAGCAGAGCGCTCTACTGGTATGGGAAGAGTACCAATGTGCAGAACTTCCT 2495
Score = 1240 bits (671), Expect = 0.0
Identities = 839/920 (91%), Gaps = 12/920 (1%)
Strand=Plus/Plus
Query 93 TAGGTCTTGATTCGATTTGGTTAAC-CTTGTAAATGTG-AAGAACAATGGCTTTAAAGGC 150
|||| ||||||||||||| |||||| ||||||||||| || ||||||||||||||||||
Sbjct 125 TAGGCCTTGATTCGATTTTGTTAACTGTTGTAAATGTGAAAAAACAATGGCTTTAAAGGC 184
Query 151 GAAGAAAAGTTTAAGCGCGCTATTTCGCTTTGCGATGAGAAACGCTGCCAAGACTGCTGA 210
||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||| ||
Sbjct 185 GAAGAAAAGCTTAAGCGCGATATTTCGCTTTGCGATGAGAAACGCTGCCAAAACTGCCGA 244
Query 211 AGCCGAAGCCAAAGCCATAGCCGGAGATTCACTGACTTCCGACACTGGACTAGTGTCATT 270
|| |||||||||||| ||||||||||||| |||| ||| |||||||||| ||||||| |
Sbjct 245 AGTTGAAGCCAAAGCCGTAGCCGGAGATTCTCTGATTTCAGACACTGGACCAGTGTCAAT 304
Query 271 GAGTTTAATGCCGGACTTTCTCTCATCGCTTAAGTCTTCGGACGATTCGTCTATCACTGG 330
| |||||| ||||| ||||||||||||||||||||| |||| ||||| || | || |||
Sbjct 305 GTCTTTAATACCGGATTTTCTCTCATCGCTTAAGTCTCCGGAAGATTCTTCCAACATTGG 364
Query 331 ACAAGATCTTGGAGAACCGGCACTCGCGGGTCAGGTCTCGTCCGCTTTAGATGTTAAATC 390
|||||| |||| ||||||||||| ||||||||||||||||| || ||||||||||||||
Sbjct 365 TCAAGATTTTGGTGAACCGGCACTTGCGGGTCAGGTCTCGTCTGCGTTAGATGTTAAATC 424
Query 391 TATTGGTA-ATAGTCTTATTCAAGAAAGAAATGGCGATAATGGTTTTT-CGAAGAACGCA 448
|||||| | ||| |||| ||| ||||||||||||||| || |||||| ||||||||| |
Sbjct 425 TATTGG-ATATAATCTTCTTCGAGAAAGAAATGGCGAGAA-AGTTTTTCCGAAGAACGTA 482
Query 449 TTGGAAACCTCAGATTTCCTGAATAGGAAA-ATTGTTTCGTCGCAAAAGCCAAAACAGGC 507
|||||||||| |||||| ||| ||||||| ||| |||||||||||||||||| |||||
Sbjct 483 TTGGAAACCTTAGATTTACTGTCTAGGAAAGGTTG-TTCGTCGCAAAAGCCAAAGCAGGC 541
Query 508 TTCACGTGGCAGGGTGCAGACAGAGAATTATCAGAAAAAACAGTCAGAGATTATGGAGAA 567
||||||||| ||| ||| |||||| ||||| ||||| |||||||| ||||||||||||||
Sbjct 542 TTCACGTGGTAGGATGCTGACAGAAAATTACCAGAACAAACAGTCTGAGATTATGGAGAA 601
Query 568 GCTTGCCAAGGGCTGTGTTCGGAAGTTGGGCACTGAGACTATGTTTGAGGTGTTGACTAA 627
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 602 GCTTGCCAAGGGATGTGTTCGGAAGTTGGGAACTGAGACTATGTTTGAGGTGTTGACTAA 661
Query 628 AATGGGAAAAGAAGCGGGTGAGAAAGAATACAATGCAATGACTAAACTTTGCATAGAACG 687
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 662 AATGGGGAAAGAAGCGGGTGAGAAAGAATACAATGCAATGACTAAACTTTGCATACAACG 721
Query 688 CGCAAGGAGAAGCAATGATGCAGAATATGCTCTTGATCAAATTGGGAAGGCTATTGAACA 747
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 TGCGAGGAGAAGCAATGATGCAGAATATGCTCTTGATCAAATTGGGAAGGCTATTGAACA 781
Query 748 TCTCAAAGAAATGAGACAACTCGGATTCTCTATAGGAGAAGGAGCTTATGGGCCtttttt 807
|||||||||||||||||| || ||||||||||| ||||||||||||||||| ||||||||
Sbjct 782 TCTCAAAGAAATGAGACAGCTTGGATTCTCTATTGGAGAAGGAGCTTATGGCCCTTTTTT 841
Query 808 tAAGTACTTAGTTGATATGGAAATGGTAGAGGAATTCCAAATTCTCAAGGATTTTATTAA 867
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 842 TAAGTACTTAGTTGATATGGAAATGGTAGCGGAGTTCCAAATTCTCAAGGATTTTATTAA 901
Query 868 GGAGGCTTGCCCTGAGTCTAGTGGGAGACTTGTCTACTATGAAATGCTCCTTTGGATCCA 927
|||||| || ||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 902 GGAGGCATGTCCTGAGTCTTGTGGGAGACTTGTCTACTATGAAATGCTTCTTTGGATCCA 961
Query 928 AGTCAACGACGAAGAGAAGATCCACAAACTTTGCAATACAA-TTGATGATAGTGGGCTTA 986
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
Sbjct 962 AGTCAACGACGAAGAGAAGATCCACAAACTTTGCAATA-AAGTTGATGATAGTGGGCTAA 1020
Query 987 GTTTATCAAATT-TACAAGA 1005
||||||||| | |||||||
Sbjct 1021 GTTTATCAA-TCCTACAAGA 1039
Score = 675 bits (365), Expect = 0.0
Identities = 377/383 (98%), Gaps = 0/383 (0%)
Strand=Plus/Plus
Query 1002 AAGATGGAGTGGAGACAGTTTCAAATCTCATATTCAGCTATGCAACCTGCATCCCAAATT 1061
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1222 AAGATGGAGTGGAGACAGTTTCAAATCTCATATTCAGCTATGCAACCTGCATCCCAAATT 1281
Query 1062 CAACGGTAGAGGATGCCATTTTCAAGTTTAACAAGTTGCATGAAGAACTAGATGTCGTGC 1121
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1282 CAACGGTAGAGGATGCCATTTTCAAGTTTAACAAGTTGCATGAAGAACTAGATATCGTGC 1341
Query 1122 CTCCATCTACATCTTATGAGAATCTTGTCAGTTATCTTTGTGGCTCAAATGAGGTGGTCA 1181
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1342 CTTCATCTACATCTTATGAGAATCTTGTCAGTTATCTTTGTGGCTCAAATGAGGTGGTCA 1401
Query 1182 CTGCTCTTGATATAGTTGAAAATATGTGTGAAGCAGGTCTGGTAATATCGGCAAACATCC 1241
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1402 CTGCTCTTGATATAGTTGAAAATATGTGTGAAGCAGGTCTGGTAATATCAGCAAACATCC 1461
Query 1242 TGCACTCATTGTTACAGGCCGTTGAGCAGATTCTTGAGTTTAATTTGGTGCAAAGAATCT 1301
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1462 TGCACTCATTGTTACAGGCCATTGAGCAGATTCTTGAGTTTAATTTGGTGCAAAGAATCT 1521
Query 1302 ATTCAATAATGAGCAACAAGAGTGTGAAGCCAAATAGTGAGACTTTCAGGAGATCGATAA 1361
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 1522 ATTCAATAATGAGCAACAAGAGTGTGAAGCCAAATAGTGAGACTTTCAGGAAATCTATAA 1581
Query 1362 ATTTGTGCATAAGAATCAAAGAT 1384
|||||||||||||||||||||||
Sbjct 1582 ATTTGTGCATAAGAATCAAAGAT 1604
Score = 180 bits (97), Expect = 8e-44
Identities = 105/109 (96%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 2408 AGGATGTATCAGGTTCTAGTAGCTGCAGGAGATTCTAAAAGTGCAGAGGCATTAGTATCA 2467
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 2517 AGGATGTATCAGGTTCTAGTAGCTGCAGGAGATTCGAAAAGTGCAGAGGCAATAGTATCA 2576
Query 2468 AAGATTCCTAATGACGATAAAGATGTCAAATGTATAGTTAAAGAAAGCC 2516
|||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 2577 AAGATTCCTAATGATGATAAAGATGTCAAATGTATAATTAAAGAAAGCC 2625
Score = 121 bits (65), Expect = 5e-26
Identities = 74/78 (95%), Gaps = 1/78 (1%)
Strand=Plus/Plus
Query 1 AGATTAATTACATTAGTGCCACTATACACAAAATCTTGCAGGGTTTATCAAACACTTCTT 60
||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 3 AGATTAATTACATAAGTGCCACTA-CCACAAAATCTTGCAGGGTTTATCAAACACTTGTT 61
Query 61 CCGAATGATTCATCTTCT 78
||||||||||||||||||
Sbjct 62 CCGAATGATTCATCTTCT 79
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 138059427136
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5