BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg492684

Length=449
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G21870.1 | Symbols:  | HSP20-like chaperones superfamily pro...   617    2e-176


> AT4G21870.1 | Symbols:  | HSP20-like chaperones superfamily protein 
| chr4:11603568-11604331 REVERSE LENGTH=639
Length=639

 Score =  617 bits (334),  Expect = 2e-176
 Identities = 421/461 (91%), Gaps = 13/461 (3%)
 Strand=Plus/Plus

Query  1    AAAAAATGGATTTTCAGACAATTCAAGTGATGCCATGGGAATATGTTTTATCTTCTCAAT  60
            ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct  42   AAAAAATGGATTTTCAGACAATTCAAGTGATGCCATGGGAATATGTTCTAGCTTCTCAAT  101

Query  61   CTCTTAGTGGA-TATCAAGAGAATCATGTTCGTTGGTCTCAGTCTCCAGATTCTCACACT  119
            |||||| |  | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  102  CTCTTAATA-ACTATCAAGAGAATCATGTTCGTTGGTCTCAGTCTCCAGATTCTCACACT  160

Query  120  TTCTCTGTTGATCTTCCTGGGTTTAGGAAAGAAGAAATAAAAGTTGAGATCGAAGATTCG  179
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  161  TTCTCTGTTGATCTTCCTGGGTTAAGGAAAGAAGAAATAAAAGTTGAGATCGAAGATTCG  220

Query  180  ATATACTTGATCATAAGAACGGAGGCGACCC----GTC-C----GGATCAGCCGGTGAAG  230
            |||||||| |||||| |||||||||| ||||    ||| |    |||||||||  |||||
Sbjct  221  ATATACTTAATCATACGAACGGAGGCAACCCCTATGTCGCCTCCGGATCAGCCTTTGAAG  280

Query  231  AGTTTTAAGAGGAAATTCCGGTTGCCGGAATCGATAGATATGATAGGAATATCAGCTGGT  290
            | ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| 
Sbjct  281  ACTTTTAAGAGGAAATTTCGGTTGCCGGAATCGATAGATATGATCGGAATATCAGCTGGC  340

Query  291  TATGAAGATGGTGTGTTGACTGTGATTGTACCAAAGAGGATTACGACAAGGAGATTCATT  350
            || ||||||||||||||||||||||||||||| |||||||||| |||||||||  |||||
Sbjct  341  TACGAAGATGGTGTGTTGACTGTGATTGTACCCAAGAGGATTATGACAAGGAGGCTCATT  400

Query  351  GAACCTTCTGATGTTCCTGAAACTCTTCAACTACTTGCAAGAGCTGCTTAAAAACGCGTT  410
            || ||||||||||||||||||| ||||||||| ||||| |||||||||||| ||||||||
Sbjct  401  GATCCTTCTGATGTTCCTGAAAGTCTTCAACTTCTTGCTAGAGCTGCTTAATAACGCGTT  460

Query  411  A--TTGTGCTTCCTTGTACCCCACGAGTTCGATCTTTGTTT  449
            |  |||| ||||||||| |||||||||||| ||||||||||
Sbjct  461  ACATTGTTCTTCCTTGTCCCCCACGAGTTCAATCTTTGTTT  501



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21363793325


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5