BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg492685

Length=621
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G21865.1 | Symbols:  | unknown protein; Has 11 Blast hits to...   723    0.0  


> AT4G21865.1 | Symbols:  | unknown protein; Has 11 Blast hits 
to 11 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr4:11601905-11603276 FORWARD 
LENGTH=783
Length=783

 Score =  723 bits (391),  Expect = 0.0
 Identities = 470/509 (92%), Gaps = 2/509 (0%)
 Strand=Plus/Plus

Query  66   TCGAGATTGGAACCAAAATTATGTACCCGAAAGTGAAAGCTGACAACGAAGCTTGTAGTT  125
            |||| ||||||||||||| |||||||||||||||||||  |||||| |||||| |||| |
Sbjct  105  TCGAAATTGGAACCAAAACTATGTACCCGAAAGTGAAAATTGACAATGAAGCTGGTAGAT  164

Query  126  ACAAGTAG-AGGAGTTCTTGTCTGAACTCGAACTATCTCCAAACTCGTGTCTCTGAGAAT  184
            ||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  165  ACAAGCAGAAGG-GTTCTTGTCTGAACTCGAACTATCTCCAAACTCGTGTCTCTGAGAAT  223

Query  185  AATCAAGAAGATGATTTACAAATATATGTGGCTAAGATTCCTAAGATTTACATACCAAGT  244
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  224  AATCAAGAAGATGATTTACAAATATACGTGGCTAAGATTCCTAAGATTTACATACCAAGT  283

Query  245  GTCCTCATGTCTGAAAGTGAATCCAAAGAAATGAATAAGCGTATTAGAGGAGCTGACATT  304
            |||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  284  GTCCTCATGTCTCAGAGTGAATCCAAAGAAATGAATAAGCCTATTAGAGGAGCTGACATT  343

Query  305  GAAGTAAAATCAAAAACCAAAGCCAGTCCGATCTTACGCCCACGCGCTGTTGTATCAAGT  364
            ||||||||| ||| ||||||||||||||| | | |||| |||||||||||||||||||||
Sbjct  344  GAAGTAAAACCAATAACCAAAGCCAGTCCAACCCTACGTCCACGCGCTGTTGTATCAAGT  403

Query  365  CCCGATAATGATGCAATGATCGGCAACATGAACATGATTGAAGAAAGAAAAGCTAAGAAG  424
            |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  404  CCCGATAATGATGCGATGATCGGCAACATGAACATGATTGAAGAAAGGAAAGCTAAGAAG  463

Query  425  GGTTTGAAGAGTGATGATCATATCAGGAGCAGAGCTTCTCAGCCTAAGAATATTGATACT  484
            |||||||||||| | |||||||| | ||| || |||||||||| ||||||| || |||| 
Sbjct  464  GGTTTGAAGAGTAAAGATCATATTAAGAGTAGGGCTTCTCAGCTTAAGAATGTTAATACC  523

Query  485  AATGTGAAGATTTCTCATCGTATAGTCGCTAAGCAATCAGGAGTCAATTCAAGGGATCAC  544
            |||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||
Sbjct  524  AATGTGAAGATTTCTCATCGTATAGTCGCTAAGCTACCGGGAGTCAATTCAAGGGATCAC  583

Query  545  AAATGATCAACTTGTTTATTGATGATGCC  573
            ||||||||| ||| | |||| ||||||||
Sbjct  584  AAATGATCAGCTTCTCTATTAATGATGCC  612



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29939551612


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5