BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492685
Length=621
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21865.1 | Symbols: | unknown protein; Has 11 Blast hits to... 723 0.0
> AT4G21865.1 | Symbols: | unknown protein; Has 11 Blast hits
to 11 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr4:11601905-11603276 FORWARD
LENGTH=783
Length=783
Score = 723 bits (391), Expect = 0.0
Identities = 470/509 (92%), Gaps = 2/509 (0%)
Strand=Plus/Plus
Query 66 TCGAGATTGGAACCAAAATTATGTACCCGAAAGTGAAAGCTGACAACGAAGCTTGTAGTT 125
|||| ||||||||||||| ||||||||||||||||||| |||||| |||||| |||| |
Sbjct 105 TCGAAATTGGAACCAAAACTATGTACCCGAAAGTGAAAATTGACAATGAAGCTGGTAGAT 164
Query 126 ACAAGTAG-AGGAGTTCTTGTCTGAACTCGAACTATCTCCAAACTCGTGTCTCTGAGAAT 184
||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 165 ACAAGCAGAAGG-GTTCTTGTCTGAACTCGAACTATCTCCAAACTCGTGTCTCTGAGAAT 223
Query 185 AATCAAGAAGATGATTTACAAATATATGTGGCTAAGATTCCTAAGATTTACATACCAAGT 244
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 224 AATCAAGAAGATGATTTACAAATATACGTGGCTAAGATTCCTAAGATTTACATACCAAGT 283
Query 245 GTCCTCATGTCTGAAAGTGAATCCAAAGAAATGAATAAGCGTATTAGAGGAGCTGACATT 304
|||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 284 GTCCTCATGTCTCAGAGTGAATCCAAAGAAATGAATAAGCCTATTAGAGGAGCTGACATT 343
Query 305 GAAGTAAAATCAAAAACCAAAGCCAGTCCGATCTTACGCCCACGCGCTGTTGTATCAAGT 364
||||||||| ||| ||||||||||||||| | | |||| |||||||||||||||||||||
Sbjct 344 GAAGTAAAACCAATAACCAAAGCCAGTCCAACCCTACGTCCACGCGCTGTTGTATCAAGT 403
Query 365 CCCGATAATGATGCAATGATCGGCAACATGAACATGATTGAAGAAAGAAAAGCTAAGAAG 424
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 404 CCCGATAATGATGCGATGATCGGCAACATGAACATGATTGAAGAAAGGAAAGCTAAGAAG 463
Query 425 GGTTTGAAGAGTGATGATCATATCAGGAGCAGAGCTTCTCAGCCTAAGAATATTGATACT 484
|||||||||||| | |||||||| | ||| || |||||||||| ||||||| || ||||
Sbjct 464 GGTTTGAAGAGTAAAGATCATATTAAGAGTAGGGCTTCTCAGCTTAAGAATGTTAATACC 523
Query 485 AATGTGAAGATTTCTCATCGTATAGTCGCTAAGCAATCAGGAGTCAATTCAAGGGATCAC 544
|||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||
Sbjct 524 AATGTGAAGATTTCTCATCGTATAGTCGCTAAGCTACCGGGAGTCAATTCAAGGGATCAC 583
Query 545 AAATGATCAACTTGTTTATTGATGATGCC 573
||||||||| ||| | |||| ||||||||
Sbjct 584 AAATGATCAGCTTCTCTATTAATGATGCC 612
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29939551612
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5