BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492686
Length=806
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21860.1 | Symbols: MSRB2 | methionine sulfoxide reductase B... 976 0.0
> AT4G21860.1 | Symbols: MSRB2 | methionine sulfoxide reductase
B 2 | chr4:11600005-11601577 REVERSE LENGTH=912
Length=912
Score = 976 bits (528), Expect = 0.0
Identities = 701/778 (90%), Gaps = 37/778 (5%)
Strand=Plus/Plus
Query 38 AATGGCGTTCAATATCATAACACCTGGTCGTGTTTATTCAGCCACGTCTCTCACTTTCGT 97
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 70 AATGGCGTTCAATATCATAACACCTGGTCGTGTTTATTCAGCCACGTCTCTCACTTTCGT 129
Query 98 TTCCACCATTAAATCTGCTTTCGTTAGA---CC-Tt---ctct-c-tctc-tcACAACCA 147
||||||||||||| |||||||||||| | || || |||| | |||| || ||||
Sbjct 130 TTCCACCATTAAAGCTGCTTTCGTTAAACCTCCTTTGGCCTCTCCGTCTCGTCGTAACCT 189
Query 148 CCACCGGATTTGCT--TCGTCTCC-GTCTCA-TT---TC-CTCCGTCGAGGTTTTCACGG 199
|| | | ||| || || ||||| | ||| || || |||||||||||||| |||||
Sbjct 190 CCTTC-G-TTT-CTCATCATCTCCTTTGTCATTTCCGTCGCTCCGTCGAGGTTTCCACGG 246
Query 200 TGGACGTATTGTGGCAATGGGTTCTTCTGCTCCTGAATCTGTCAATAAGCCGGAAGAAGA 259
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 247 TGGTCGTATTGTGGCAATGGGTTCTTCTGCTCCTGAATCGGTCAATAAGCCGGAAGAAGA 306
Query 260 GTGGCGTGCGATTCTTTCTCCTGAGCAATTTAGGATTCTCAGACAGAAAGGCACTGAATA 319
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 307 GTGGCGTGCGATTCTTTCTCCTGAACAATTTAGGATTCTCAGACAGAAAGGCACTGAATA 366
Query 320 TCCAGGAACAGGAGAATACAACAAACTATTCGACGACGGCATCTATTGTTGTGCAGGATG 379
||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 367 TCCAGGAACTGGAGAATACAACAAAGTATTCGACGATGGCATCTATTGTTGTGCAGGATG 426
Query 380 TGGAACTCCTCTCTACAAATCCACCACCAAATTCGACTCCGGGTGTGGCTGGCCAGCTTT 439
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 427 TGGAACTCCTCTCTACAAATCCACCACCAAATTCGACTCTGGTTGTGGCTGGCCAGCTTT 486
Query 440 CTTTGACGGACTCCCCGGAGCTATAAACCGAACCCCCGATCCAGATGGAAGACGAATCGA 499
|||||| ||||||||||||||||||| ||||||||| ||||||||||| |||||||||||
Sbjct 487 CTTTGATGGACTCCCCGGAGCTATAACCCGAACCCCTGATCCAGATGGGAGACGAATCGA 546
Query 500 GATCACATGTGCCGCTTGTGGGGGACATCTCGGTCATGTATTTAAAGGAGAAGGTTTCCC 559
|||||||||||| |||||||| |||||||| ||||| || ||||||||||||||||||||
Sbjct 547 GATCACATGTGCTGCTTGTGGAGGACATCTTGGTCACGTTTTTAAAGGAGAAGGTTTCCC 606
Query 560 TACTCCTACCGATGAGCGACACTGTGTAAACAGTATCTCTCTCAAGTTCACACCAGAGAA 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 TACTCCTACCGATGAGCGACACTGTGTAAACAGTATCTCTCTCAAGTTCACACCAGAGAA 666
Query 620 TCCAACCCTGTAATAATATGATCA-A------------T-A-A-TATAGTTGTGTTGTGT 663
||| |||||||||||||||||||| | | | | ||||| ||||||||||
Sbjct 667 TCCGACCCTGTAATAATATGATCACAGAAAAAAAGACGTGATAATATAGGTGTGTTGTGT 726
Query 664 GATGCTTCTATGTCTCTCTCATATTGTGTTTTTGTCTTTTGTCGGTGAGACTCGTGTTTA 723
||||||||| | |||||||| || |||||||||||||||| || |||||||| ||||||
Sbjct 727 GATGCTTCTGTCTCTCTCTCGTACTGTGTTTTTGTCTTTTTTCTGTGAGACTAATGTTTA 786
Query 724 GTTTTGATGGCTAATAATAAGGTCGTTGAATAAAGTCTCCAGACTTTTTGTATCGTCA 781
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 CTTTTGATGGTTAATAATAAGGTCGTTGAATAAAGTCTCCAGACTTTTTGTATCGTCA 844
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39232868807
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5