BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492690
Length=647
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21830.1 | Symbols: ATMSRB7, MSRB7 | methionine sulfoxide re... 837 0.0
AT4G21840.1 | Symbols: ATMSRB8, MSRB8 | methionine sulfoxide re... 802 0.0
> AT4G21830.1 | Symbols: ATMSRB7, MSRB7 | methionine sulfoxide
reductase B7 | chr4:11584346-11585419 REVERSE LENGTH=817
Length=817
Score = 837 bits (453), Expect = 0.0
Identities = 541/582 (93%), Gaps = 11/582 (2%)
Strand=Plus/Plus
Query 23 CTCTCAAGCATCATTACATCAACAAATCCTATTCTCGTCATGGCAGCAATGACCACAGCA 82
|||||||||||||||| || |||||||||||||| ||||||||||||||||||| | |||
Sbjct 125 CTCTCAAGCATCATTAGATAAACAAATCCTATTCCCGTCATGGCAGCAATGACCGCGGCA 184
Query 83 GCAGTTCCAGCAACGGGATCTTTCCAGAAACAAGACGAGGAGTGGCGTGCGGTTTTGTCT 142
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 185 GCAGTTCCAGCAACTGGATCTTTCCAGAAACAAGACGAGGAGTGGCGTGCGGTTCTGTCT 244
Query 143 CCTGAGCAGTTTAGGGTTCTCAGACTAAAAGGCACAGATAAACGAGGCAAAGGAGAGTAT 202
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 245 CCTGAGCAGTTTAGGGTTCTCAGACTAAAAGGCACAGATAAACGAGGCAAAGGAGAGTTT 304
Query 203 ACAAAGAAGTTCGAGGAAGGGACTTATAGTTGTGCTGGTTGTGGAACTGCTCTTTATAAA 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 305 ACAAAGAAGTTCGAGGAAGGGACTTATAGTTGTGCTGGTTGTGGAACTGCTCTTTATAAA 364
Query 263 TCAACCACTAAGTTCGACTCCGGTTGCGGCTGGCCGGCTTTCTTCGACGCCATCCCCGGT 322
|| |||||||||||||||||||||||||| ||||| || |||||||||||||||||||||
Sbjct 365 TCGACCACTAAGTTCGACTCCGGTTGCGGTTGGCCTGCGTTCTTCGACGCCATCCCCGGT 424
Query 323 GCTACTAAACAAACTCCAGAAGCAGGTGGAAGAAGAATGGAGATAACATGTGCAGTGTGT 382
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 GCTATTAAACAAACTCCAGAAGCAGGTGGAAGAAGAATGGAGATAACATGTGCAGTGTGT 484
Query 383 GATGGACATCTAGGCCATGTTTTTAAAGGAGAAGGTTACTCTACTCCAACTGATCAACGT 442
||||||||| ||||||||||||| ||||| |||||||||||||||||||| |||||||||
Sbjct 485 GATGGACATTTAGGCCATGTTTTCAAAGGCGAAGGTTACTCTACTCCAACCGATCAACGT 544
Query 443 CACTGCGTTAACAGTGTCTCTCTCAAATTCGCTCCTGCTAATTCCTCCCACTAATCAT-- 500
|||||||||||||||||||||||||||||| || ||||| ||||||||| |||||||
Sbjct 545 CACTGCGTTAACAGTGTCTCTCTCAAATTCTCTTCTGCTGGTTCCTCCCAATAATCATAT 604
Query 501 CATTGATCGGACCAATTTATTTCATGTAATCAAAGAAT-TATGTTCTATGATCCGTGAGA 559
|||||||||||||| ||||| ||||| |||||| |||| ||| | |||||||| ||| ||
Sbjct 605 CATTGATCGGACCACTTTATCTCATGAAATCAA-GAATCTAT-T-CTATGATCTGTGTGA 661
Query 560 TGCTTGCTAGATTACATATTCC--TACTCATGTAATACTATG 599
||||||||| || | | |||| ||||||||||||| ||||
Sbjct 662 -GCTTGCTAGGTTTC-T-TTCCCATACTCATGTAATATTATG 700
> AT4G21840.1 | Symbols: ATMSRB8, MSRB8 | methionine sulfoxide
reductase B8 | chr4:11587049-11588272 REVERSE LENGTH=708
Length=708
Score = 802 bits (434), Expect = 0.0
Identities = 537/585 (92%), Gaps = 13/585 (2%)
Strand=Plus/Plus
Query 20 GATCTCTCAAGCATCATTACATCAA-CAAATCCTATTCTCGTCATGGCAGCAATGACCAC 78
|||||||| ||||||||||||| || |||||| |||||||| ||| | ||||||||| |
Sbjct 53 GATCTCTCTAGCATCATTACAT-AACCAAATCATATTCTCGACAT-G--GCAATGACCGC 108
Query 79 AGCAGCAGTTCCAGCAACG-GGATCTTTCCAGAAACAAGACGAGGAGTGGCGTGCGGTTT 137
|| ||||||||| ||| | ||||||||||||||||||||||| ||||||||||| |||
Sbjct 109 GGCTGCAGTTCCATCAA-GTGGATCTTTCCAGAAACAAGACGAAGAGTGGCGTGCTGTTC 167
Query 138 TGTCTCCTGAGCAGTTTAGGGTTCTCAGACTAAAAGGCACAGATAAACGAGGCAAAGGAG 197
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 168 TGTCTCCTGAGCAGTTTAGGGTTCTCAGACTAAAAGGAACAGATAAACGAGGCAAAGGAG 227
Query 198 AGTATACAAAGAAGTTCGAGGAAGGGACTTATAGTTGTGCTGGTTGTGGAACTGCTCTTT 257
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 228 AGTTTACAAAGAAGTTCGAGGAAGGGACTTATAGTTGTGCTGGTTGTGGAACTGCTCTTT 287
Query 258 ATAAATCAACCACTAAGTTCGACTCCGGTTGCGGCTGGCCGGCTTTCTTCGACGCCATCC 317
||||||| |||||||||||||||||||||||||| ||||| || ||||||||||||||||
Sbjct 288 ATAAATCGACCACTAAGTTCGACTCCGGTTGCGGTTGGCCTGCGTTCTTCGACGCCATCC 347
Query 318 CCGGTGCTACTAAACAAACTCCAGAAGCAGGTGGAAGAAGAATGGAGATAACATGTGCAG 377
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 348 CCGGTGCTATTAAACAAACTCCAGAAGCAGGTGGAAGAAGAATGGAGATAACATGTGCAG 407
Query 378 TGTGTGATGGACATCTAGGCCATGTTTTTAAAGGAGAAGGTTACTCTACTCCAACTGATC 437
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct 408 TGTGTGATGGACATCTAGGCCATGTTTTCAAAGGCGAAGGTTACTCTACTCCAACCGATC 467
Query 438 AACGTCACTGCGTTAACAGTGTCTCTCTCAAATTCGCTCCTGCTAATTCCTCCCACTAAT 497
|||||||||||||||||||||||||||||||||||||| ||||| |||| ||| | ||||
Sbjct 468 AACGTCACTGCGTTAACAGTGTCTCTCTCAAATTCGCTTCTGCTGATTCTTCCAAATAAT 527
Query 498 CATCATTGATCGG----ACCAATTTATTTCATGTAATCAAAGAATTATGTTCTATGATCC 553
||||| ||||||| |||| |||| |||||| |||||||||||||| |||| ||| |
Sbjct 528 CATCACTGATCGGTCGGACCACTTTACCTCATGTTATCAAAGAATTATGATCTACGATAC 587
Query 554 GTGAGATGCTTGCTAGATTACATATTCCTACTCATGTAATACTAT 598
|||||||||||||||| |||||| | ||||||||||||||| |||
Sbjct 588 GTGAGATGCTTGCTAGTTTACAT-T-CCTACTCATGTAATATTAT 630
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31245639434
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5