BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492692
Length=3634
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21820.1 | Symbols: | binding;calmodulin binding | chr4:115... 1991 0.0
> AT4G21820.1 | Symbols: | binding;calmodulin binding | chr4:11577524-11584053
FORWARD LENGTH=3984
Length=3984
Score = 1991 bits (1078), Expect = 0.0
Identities = 1248/1326 (94%), Gaps = 28/1326 (2%)
Strand=Plus/Plus
Query 1389 GAAAATGGTAGTTCCATCCGACAATCGAAAGAAGAACTTGGTCAATTGTAGAATTGCACT 1448
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1411 GAAAATGGTAGTTCCATCCGACAATCGAAAGAAGAACTTGGCCAATTGTAGAATTGCACT 1470
Query 1449 TCAATATCTGAAGGATGCTGGAGTTTCGTTAAAAGATGATGAGGGAATGATGATAACTGG 1508
||||||||| ||||||||||| ||||||||||||||||| || |||||||||||||||||
Sbjct 1471 TCAATATCTTAAGGATGCTGGTGTTTCGTTAAAAGATGACGAAGGAATGATGATAACTGG 1530
Query 1509 GGAAGATGTTGCAGATGGTGACAGAGAGCTCACTATTTCACTGCTATGGAACATTTTTGT 1568
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1531 GGAAGATGTTGCAGATGGTGACAGAGAGCTCACTATTTCACTACTATGGAACATTTTTGT 1590
Query 1569 ACATTTGCAGCTGCCTCTTCTGATCAATGGGAGACTCTTGACGGAGGAAATCTACAAAGT 1628
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1591 ACATTTGCAGCTGCCTCTTCTGATTAATGGGAGACTCTTGACAGAGGAAATCTACAAAGT 1650
Query 1629 CCAGGG-GCTGGAACAGAATAATCAAATTACCATGTCTACTCCTCCTCTGGAAATGCTCT 1687
|||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1651 CCAGGGAG-TGGAACAGAATAATCAAATTACCATGTCTA---CTCCTCTGGAAATGCTCT 1706
Query 1688 TGAACTGGATCCAGGATTCTGGTGGTGAACAAGGCCCTCAATCAGTAATGTCCAATACCG 1747
||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||
Sbjct 1707 TGAACTGGATCCAGGATCCTGGTGGTCAAGAAGGCCCTCAATCAGTAATGTCCAATACCG 1766
Query 1748 ATTACCATGATGCAGTTCAAAATTTTATTCTGTCGCAAAAGTTGACAGCACTTTTGGGAA 1807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1767 ATTACCATGATGCAGTTCAAAATTTTATTCTGTCGCAAAAGTTGACAGCACTTTTGGGAA 1826
Query 1808 GTTTTCCTGAGATTGGTGACTTACTGGAACATAATGCAGTAGTTAGCAACCAAAGTGTGA 1867
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1827 GCTTTCCTGAGATTGGTGACTTACTGGAACATAATGCAGTAGTTAGCAACCAAAGTGTGA 1886
Query 1868 TTATACTGTTGGCTTTCCTATCATCAAAGCTGATCGTCAAGGAGAATTTG---G------ 1918
|||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1887 TTATACTGTTGGCTTTCCTATCATCAAAGCTGATCGTCAAGGAGAATTTGTTAGATTTTA 1946
Query 1919 ---T---AGGTTATCTTACAAATTCCGTCTTTTCTCAGGAGAAACTGAACTTTCATAAGT 1972
| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 1947 CATTGGCAGGTTATCTTACAAATTCCGTCTTTTCTCAGGAGCAACTGAATTTTCATAAGT 2006
Query 1973 TGCTGTGCTCTAGCTGTCAAGCTCAGGAGAAGAGATATT----CA-C-GCATCAGTTGCA 2026
||||||||||||||||||||| ||||||||||||||||| || | | ||||||||||
Sbjct 2007 TGCTGTGCTCTAGCTGTCAAGTTCAGGAGAAGAGATATTCGCGCATCAGAATCAGTTGCA 2066
Query 2027 GCAGCTCTGAAGCAGTTACAAAT-GAGGAACCGGACAGAGAAAATGGAGAAGATACTACG 2085
||||||||||||||||||| ||| |||||||| ||||||||||||||||||||| ||||
Sbjct 2067 GCAGCTCTGAAGCAGTTAC-AATCGAGGAACCAGACAGAGAAAATGGAGAAGATGCTACT 2125
Query 2086 AAAAGTTTCCAGGCAATCAAAGCCTGGTGGCAGGACATGGCCAACCAAAACCAAAATTCT 2145
||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 2126 AAAAGGTTCCAGGCAATCAAAGCCTGGTGGCAGGACATGGCCAACCAAAATCAAATTTCT 2185
Query 2146 GTTGGAAAAGCTAGTAACGATACTCTGCAAAGCTCCTTGTCTAGCGAATGCACTACAGAT 2205
||||||||||||| || | ||||||||||| ||||||||||||| ||||||| || |||
Sbjct 2186 GTTGGAAAAGCTAATAGCCATACTCTGCAAGGCTCCTTGTCTAGAAAATGCACCACGGAT 2245
Query 2206 TCCCAACGAGCATACCTCTTGCTTACAGAAATTGCAGCTGTGGTCATACAATCAAATATT 2265
|||||||||||||||||||| ||| ||||||||||||| ||| |||||||||| ||||||
Sbjct 2246 TCCCAACGAGCATACCTCTTACTTGCAGAAATTGCAGCAGTGATCATACAATCGAATATT 2305
Query 2266 AAGGGACTTGATGCACGACGCAAGTTTAGAAAGAAGATGAGAGCAATCTGCTTCTTACAA 2325
| ||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 2306 AGGGGACTTCATGCACGCCGCAAGTTTAGAAATAAGATGAGAGCAATCTGCTTCTTACAA 2365
Query 2326 GCTTCTGTTCGGACATGGTTGTCAGTGAAAAATATACAAGTTCTTGAGAAGTTAAATGTT 2385
||| |||||||||||||||| ||||||||||||||||||||| ||||||| || ||||||
Sbjct 2366 GCTGCTGTTCGGACATGGTTATCAGTGAAAAATATACAAGTTGTTGAGAAATTCAATGTT 2425
Query 2386 GAGGAAGTTACTTTACATCTATCAGAAAGATCGGCCAACTTAAAACCTGTAGCTAGATAT 2445
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 2426 GAGGAAGTTACTTTACATTTATCTGAAAGATCGGCCAACTTAAAACCTGTAGCTAGATAT 2485
Query 2446 GTCAAGTTCATTGTTGAACGAAGTCGTTTCATCAAGTTGAGGAAATCTGTTTCCGTCATT 2505
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2486 GTCAAGTTCATTGTTGATCGAAGTCGTTTCATCAAGTTGAGGAAATCTGTTTCCGTCATT 2545
Query 2506 CAGAAAGCTGTAAGGAGACATCAGAGCAACCTTCATCATGAGCTGAAAGCAGCACTCAAA 2565
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2546 CAGAAAGCTGTAAGGAGACATCAGAGCAACCTTCATCATGAGCTGAAAGCAGCACTCAGA 2605
Query 2566 ATTCAACTAGCTTGGAGGAGTTATAAAGAAAAAGTTATCTCTTCTATCACCATCCAATCT 2625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2606 ATTCAACTAGCTTGGAGGAGTTATAAAGAAAAAGTTATCTCTTCTATCACCATCCAATCT 2665
Query 2626 TATGTTCGTGGATGGATCACACGCAGAACGAATTGGACATACAAGTTTTCTTCCATACTT 2685
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 2666 TATGTTCGTGGATGGATCACACGCAGAATGAATCGGACATACAAGTTTTCTTCCATACTT 2725
Query 2686 ATTCAA 2691
||||||
Sbjct 2726 ATTCAA 2731
Score = 1868 bits (1011), Expect = 0.0
Identities = 1148/1215 (94%), Gaps = 6/1215 (0%)
Strand=Plus/Plus
Query 1 GAACAAACGACTCTTTCTCTCTCTAACGAATCTCTGATGGATGAAAATGAACCGCCGTGC 60
||||||||||||| || |||||||||| |||||| |||||||||||| ||||||||||||
Sbjct 1 GAACAAACGACTC-TT-TCTCTCTAACAAATCTCCGATGGATGAAAACGAACCGCCGTGC 58
Query 61 GTTTCACCGGCGCCGCCACGTAATCTTACGTCATTGTTACTCAGTGACATATCCAATTTC 120
| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 59 GCTTCACCGGCGCCGCCACGTAATCCGGCGTCATCGTTACTCAGTGACATATCCAATTTC 118
Query 121 AAAACGCCGCGGCGTTCTTCAGTTGTGAATTCGAAT-TTCAGTAAATCTCCGTATCCGCA 179
||||||||||||||| |||| ||||||||||||||| || ||||||||||||||||||||
Sbjct 119 AAAACGCCGCGGCGTACTTCCGTTGTGAATTCGAATATT-AGTAAATCTCCGTATCCGCA 177
Query 180 GTTCTTCACTGCATCAAAGCAAACCCCAAAACCTTCGTCTTCTAACTTCCGTCGTCCTTC 239
|||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 178 TTTCTTCACTGCATCAAAGCAAACCCCAAAATCTTCGTCTTCTAATTTCCGTCGTCCTTC 237
Query 240 CATGGTTCCTTCTTATACATCTCGGTCTAAGGTCTCAACTTCTTCGAGGCGGCTTAAAGC 299
||||||| ||||||| |||||||||||||||| ||||| || ||||||||||| |||||
Sbjct 238 AATGGTTCATTCTTATGCATCTCGGTCTAAGGTATCAACATCGTCGAGGCGGCTCAAAGC 297
Query 300 ATTTGAACTTCAGCAATCGCAATCTTCACGCAAGGCTGAGTTGACGAAAGAGAAGAATCT 359
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 298 ATTTGAACTTCAGCAATCTCAATCTTCACGCAAGGCTGAGTTGACGAAAGAGAAGAATCT 357
Query 360 TAGATCTCTTGCTAAATCACTTACTGTGTGGCTCAATTTTCTC-TTTGAAAACCCCGTAA 418
||||||||||||||||||||||||||||||||||||||| || ||||||||||| | ||
Sbjct 358 TAGATCTCTTGCTAAATCACTTACTGTGTGGCTCAATTT-CTTGTTTGAAAACCCGGAAA 416
Query 419 ACTGCGGTTGTGATCCGTTCGAGAATGACTCTGGTGTTGGGAATTTAGGTAAGGGGAAGA 478
| |||||||| |||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 417 ATTGCGGTTGCGATCCGTTCGAGAACGAGTCTGGTGTTGGGAATTTAGGTAAGGGGAAGA 476
Query 479 GAGATAGTGGTGAGGCTTTAGGAAATAGTAAATCTGTGGGAGTTGATACAATGTGGAGAA 538
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 477 GAGATAGTGGTGAGGCTTTAGGAAATAGTAAATCTGTTGGAGTTGATACAATGTGGAGAA 536
Query 539 GCCCCAAAAGGTTGAGGAATTTAGGTTGGTGTGGTGAGAAAAAAGGTTCAGAGATTGGCT 598
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 537 GCCCTAAAAGGTTGAGGAATTTAGGTTGGTGTGGTGAGAAAAAACGTTCAGAGATTGACT 596
Query 599 CTTCCTTGACTGGTGCTAAGTATTCCACGCTGAGGGAGTCTTTAAGAGATGTGTGTAGTT 658
|||||||||||||| |||||||||| ||| |||| || ||||||||||||||||||||||
Sbjct 597 CTTCCTTGACTGGTTCTAAGTATTCTACGTTGAGAGAATCTTTAAGAGATGTGTGTAGTT 656
Query 659 TAGATGATTTGAAGCAAAGAATGCAATTTCACTTGAGTTTGGCAAGTTGCAAGGAGATTT 718
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 657 TAGATGATTTGAAGCAAAGAATGCAATTTCACTTGAGTTTGGGAAGTTGCAAGGAGATTT 716
Query 719 TTGATGTCATGACCCGTGTCACCAAGAATATAGATGAAGGGAGGATAAAAATGAAATCAC 778
||||||| ||||| ||||| | ||||||||||||||||||||||||||||||||| |||
Sbjct 717 TTGATGTGATGACTCGTGTTTCAAAGAATATAGATGAAGGGAGGATAAAAATGAAACCAC 776
Query 779 AATGCCCTCTTGTAACTGATTTTGGAATGAAGGAGAAGGCCATCAAGGCATTGATGTGCT 838
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 777 AATGCCCTCTTGTAACTGATTTTGGAATGAAGGAGAAGGCCATCAAGGCACTGATGAGCT 836
Query 839 ATAACCAAGTTTGGCTTCGTTTAGGGTTATATATCATCTTTGGTGGTGATTCGTTTTTGT 898
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 837 ATAACCAAGTTTGGCTTCGTTTAGGGTTATATATCATCTTTGGTGGTGATTCCTTTTTGT 896
Query 899 CTGACAGTGAAGTTAACTCGGATCAAGAAATGGCATTCTTGAAGATGGTTATTAATAAGC 958
|||| |||||||||||||| |||||||||||||| |||||||||||||| |||| |||||
Sbjct 897 CTGATAGTGAAGTTAACTCAGATCAAGAAATGGCGTTCTTGAAGATGGTAATTAGTAAGC 956
Query 959 AGTTCTTTTCTCATGATGGCCTTGCTAGAGCTTATGCTTATAACAAGATGGTTGAGGGTT 1018
|||||||||| || ||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 957 AGTTCTTTTCCCACGATGGCCTTGCTAGATCTTATGTTTATAACAAGATGGTTGAGGGTT 1016
Query 1019 TATACAGACCAGGGTACTATGAAGCCCTTGGAAATGTGATTTTGAAGAGGATTCTGTTGC 1078
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1017 TATACAGACCAGGGTACTATGAAGCTCTTGGAAATGTGATTTTGAAGAGGATTCTGTTGC 1076
Query 1079 TCGTTCTTGTAATTGATAGAGCTAAATCTCAAAGCTGCCTTTCGCTCAAGTATGGGATTG 1138
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1077 TGGTTCTTGTAATTGATAGAGCCAAATCTCAAAGCTGCCTTTCGCTCAAGTATGGGATTG 1136
Query 1139 ATGGGATAGATGGTGGTTCACCCCTCATGTTCTCAGAAAAATCTAGTATAAAGTCTAGCC 1198
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1137 ATGGGATAGATGGTGGCTCACCCCTCATGTTCTCAGAGAAATCTAGTATAAAGTCTAGCC 1196
Query 1199 ACCAACTTATATGTG 1213
|||||||||||||||
Sbjct 1197 ACCAACTTATATGTG 1211
Score = 420 bits (227), Expect = 5e-116
Identities = 239/245 (98%), Gaps = 0/245 (0%)
Strand=Plus/Plus
Query 3390 GAACAAAGAAGAAGCATATTTCATTGCATCAGATGTTCTGAAGAAGATATGCAGTAGCCA 3449
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 3559 GAACAAAGAAGAAGCATATTTCATTGCATCAGATGTTCTGAAGAAAATATGCAGTAGCCA 3618
Query 3450 TAAAGGCGTAGAAGCAGTTCGAAAGCTTCCTGCACTGGTAAAACGGTTACACGCCTTAGT 3509
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 3619 TAAAGGCGTAGAAGCAGTTCGAAAGCTTCCTGCACTGGTAAAACGGTTACACGTCTTAGT 3678
Query 3510 TGAGGAGCTAACTCGTAAGGCAAACATCGAGAAACGGAACGTTAAGGGTCAGACTGGAAA 3569
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 3679 TGAGGAGCTAACTCGTAAGGCAAACATCGAGAAACGGAACGTTAAGGGACAGACTGGAAA 3738
Query 3570 AGAAAAGAGTGAGAGAAGATTAAAAGAAGCTATTGAGCTTCTAAAGCTTATAACTAGAAG 3629
|||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||
Sbjct 3739 AGAAAAGAGTGAGAGAAGATTAAAAGAAGCTATTGAGCTTGTTAAGCTTATAACCAGAAG 3798
Query 3630 ATGAT 3634
|||||
Sbjct 3799 ATGAT 3803
Score = 377 bits (204), Expect = 3e-103
Identities = 223/232 (96%), Gaps = 1/232 (0%)
Strand=Plus/Plus
Query 3121 TTT-GAATCGGCAACAAAATACTCTGACAAATGCTGTGAAGAGATTGTGGCAGCTGGAGC 3179
||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 3328 TTTGGAATCGGCAACCAAATACTCTGACAAATGCTGTGAAGAGCTTGTGGCAGCTGGAGC 3387
Query 3180 TATAGACAAGTTGCTAACATTGATCCGGTCTGCAAGCAGAAGCATCCCTGACCAACAAGT 3239
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 3388 TATAGAAAAGTTGCTAACATTGATCCGGTCTGCAAGCAGAAGCATCCCTGATCAACAAGT 3447
Query 3240 TTCAAAACATGCATTATCAACTTTGGGACACCTTGCTCGTTATCCACATATGGCAGATGA 3299
||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 3448 TTCAAAACATGCACTATCAACTTTGGGACATCTTGCTCGTTATCCACAAATGGCAGATGA 3507
Query 3300 GCTAATCGACACGAAAGGTTCCATTCAGACAATCTTCTGGGAACTACTCAGG 3351
||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3508 GCTAATCAACACGAAAGGTTCCATTCAGACAATCTTCTGGGAACTACTCAGG 3559
Score = 324 bits (175), Expect = 4e-87
Identities = 177/178 (99%), Gaps = 0/178 (0%)
Strand=Plus/Plus
Query 2727 TCAGTCACACTGGAGAGGTTATCTCACACGCAAAGCATCAAAGGCTCAAGTTCTGGATCT 2786
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3139 TCAATCACACTGGAGAGGTTATCTCACACGCAAAGCATCAAAGGCTCAAGTTCTGGATCT 3198
Query 2787 GAGAGTACGAATGCAAACTTCTGCAGCAAACATAGATGACAAGAAACGGTTGATAAACAA 2846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3199 GAGAGTACGAATGCAAACTTCTGCAGCAAACATAGATGACAAGAAACGGTTGATAAACAA 3258
Query 2847 GCTTCTTTCTGCGCTTTCGGAACTACTGAGCATGAAAAACGTCCACAACATTCTTCAC 2904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3259 GCTTCTTTCTGCGCTTTCGGAACTACTGAGCATGAAAAACGTCCACAACATTCTTCAC 3316
Score = 152 bits (82), Expect = 2e-35
Identities = 86/88 (98%), Gaps = 0/88 (0%)
Strand=Plus/Plus
Query 1273 GAATTATTGTCCTCTGATGTAATGCATGGAGAAGGGAATCTTCTAGCGCATCTAGTGATT 1332
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1211 GAATTATTGTCCTCTGATGTAATGCATGGAGAAGGGAATCTCCTAGCGCATCTAGTGATT 1270
Query 1333 ATAGGGTACAAAATACCTTATCAGCAGT 1360
||||| ||||||||||||||||||||||
Sbjct 1271 ATAGGATACAAAATACCTTATCAGCAGT 1298
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 180952163401
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5