BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492693
Length=1138
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21810.1 | Symbols: DER2.1 | DERLIN-2.1 | chr4:11575096-1157... 1666 0.0
AT4G04860.1 | Symbols: DER2.2 | DERLIN-2.2 | chr4:2459880-24617... 797 0.0
> AT4G21810.1 | Symbols: DER2.1 | DERLIN-2.1 | chr4:11575096-11577195
REVERSE LENGTH=1176
Length=1176
Score = 1666 bits (902), Expect = 0.0
Identities = 1080/1159 (93%), Gaps = 39/1159 (3%)
Strand=Plus/Plus
Query 1 GTTAATTCAAAGCTTTAACGTAGAAGAAGCTGATTTAAATCCCAAATTCATTTCAACGTA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTTAATTCAAAGCTTTAACGTAGAAGAAGCTGATTTAAATCCCAAATTCATTTCAACGTA 60
Query 61 GAAGCTTCTACAGATTCGATTAGGGTGAttttgttttggttttggtttttgGTAAAGCTT 120
||||||||||||||||||||| ||||| | |||||||||||| |||||||||||||
Sbjct 61 GAAGCTTCTACAGATTCGATTTGGGTG----T-TTTTGGTTTTGG-ATTTGGTAAAGCTT 114
Query 121 CTCCGTCACTTGCTCGGTGATTGAAACTAAATCGATTGTGATTGTGA--G-G--T-T-A- 172
||| |||||||||||||||||||||||| |||||||||||||||||| | | | | |
Sbjct 115 CTCGGTCACTTGCTCGGTGATTGAAACTGAATCGATTGTGATTGTGATTGTGATTGTGAT 174
Query 173 ---GA----GAAGGAATTATGGCTCAAGCCGTAGAAGAATGGTATAAGCAGATGCCGATT 225
|| || |||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 175 TGTGATTGTGAGGGAATTATGGCTCAAGCCGTAGAAGAGTGGTACAAGCAGATGCCGATT 234
Query 226 ATAACCCGGTCGTATCTCACGGCGGCTGTAGTCACCACCGTCGGATGTTCGCTCGAGATT 285
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 235 ATAACCCGGTCGTATCTCACGGCGGCTGTAGTCACCACCGTCGGGTGTTCGCTCGAGATT 294
Query 286 ATATCTCCTTATAATCTCTACCTAAATCCTACCCTTGTGGTGAAGCAATACCAGTTCTGG 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 ATATCTCCTTATAATCTCTACCTAAATCCTACCCTTGTGGTGAAGCAATACCAGTTCTGG 354
Query 346 CGTCTTGTTACAAATTTCCTTTATTTCCGAAAGATGGATTTGGACTTTTTGTTCCATATG 405
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 CGTCTTGTCACAAATTTCCTTTATTTCCGAAAGATGGATTTGGACTTTTTGTTCCATATG 414
Query 406 TTTTTTCTAGCTCGATACTGCAAACTACTCGAAGAAAACTCCTTCAGGGGAAAGACTGCG 465
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 415 TTTTTTCTAGCTCGATACTGCAAACTGCTCGAAGAAAACTCCTTCAGGGGAAAGACCGCG 474
Query 466 GATTTCCTTTACATGCTCTTATTCGGGGCAACTGTTCTAACTGGTATTGTTCTCATCGGC 525
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 475 GATTTCCTTTACATGCTCTTATTCGGGGCAACTGTTCTAACTGGTATTGTTCTCATTGGC 534
Query 526 GGAATGATACCTTATTTGTCAGTGTCATTCTCCAAAATCATCTTCCTCAGCAATTCATTG 585
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 535 GGAATGATACCTTATTTGTCTGTTTCATTCTCCAAAATCATCTTCCTCAGCAATTCATTG 594
Query 586 ACTTTCATGATGGTCTATGTATGGAGTAAACAAAATCCTTACATCCATATGAGTTTCCTT 645
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 595 ACTTTCATGATGGTCTATGTATGGAGTAAACAAAATCCTTACATCCACATGAGTTTCCTT 654
Query 646 GGCCTTTTCACTTTCACAGCAGCGTATTTACCATGGGTACTTCTTGGGTTCTCAATCCTT 705
||||| ||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||
Sbjct 655 GGCCTCTTCACTTTCACAGCAGCTTATTTACCATGGGTACTTCTTGGATTCTCTATCCTT 714
Query 706 GTTGGTGCAAGTGCTTGGGGAGATTTTCTGGGAATGATAGCGGGTCATGCATACTACTTC 765
|||||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||||
Sbjct 715 GTTGGTGCAAGTGCATGGGGGGATTTTCTGGGAATGATAGCGGGCCACGCATACTACTTC 774
Query 766 TTAGCGTTTGTGTATCCACGAATGACGGATCGACGTCCCTTGAAGACTCCATCTTTCCTC 825
|| || ||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 775 TTGGCATTTGTGTATCCCCGAATGACGGATCGACGTCCCTTGAAAACTCCATCTTTCCTC 834
Query 826 AAAGCCCTATTTGCTGATGAGCCAGTCGTGATTGCACGGCCAGAAGATGTGAGGTTTGCT 885
|| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 835 AAGGCCCTATTTGCTGATGAGCCAGTCGTGATTGCAAGGCCAGAAGATGTGAGATTTGCT 894
Query 886 CATGCGCCTTTTGATGAAATCCACCAAGACTGAATCTTGATCCTCCACAAAACACCAGCC 945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 CATGCGCCTTTTGATGAAATCCACCAAGACTGAATCTTGATCCTCCACAAAACACCAGCC 954
Query 946 ACA-CTCACAGTTGAAGTGTATTCAGATAATGTTAAAAGGGCATCCATCGACTCTTGACC 1004
||| | ||||||| ||||||| ||||||||||||| | | |||||||||||
Sbjct 955 ACAACGCACAGTTCAAGTGTACTCAGATAATGTTA--------T---T-GACTCTTGACC 1002
Query 1005 TTTATAGTTGTGGATAATGTGGAAGTGAGATGGTGTTGGGTCTGATTTTTT-CCCTAGTT 1063
||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||
Sbjct 1003 TTTATAGTTGTGGATAATGTGGAAGTGAGATAGTGTTGGCTCTGATTTTTTTCCCTAGTT 1062
Query 1064 TTCTGTTTGATTTTCTTGTCCGATACAGCT-TGA--C-TCCTTGTGCATATGAACTCAAA 1119
|||||| || ||||||||||||||||| | || | ||||||||||||||||||||||
Sbjct 1063 TTCTGTCTGCTTTTCTTGTCCGATACAAATGTGTTTCCTCCTTGTGCATATGAACTCAAA 1122
Query 1120 TTGTGTACAAAGTCTTCAA 1138
|||||||||||||||||||
Sbjct 1123 TTGTGTACAAAGTCTTCAA 1141
> AT4G04860.1 | Symbols: DER2.2 | DERLIN-2.2 | chr4:2459880-2461739
FORWARD LENGTH=1351
Length=1351
Score = 797 bits (431), Expect = 0.0
Identities = 646/749 (86%), Gaps = 18/749 (2%)
Strand=Plus/Plus
Query 183 TATGGCTCAAGCCGTAGAAGAATGGTATAAGCAGATGCCGATTATAACCCGGTCGTATCT 242
||||||||| || ||||||||||||||||| |||||||||||||| || || || |||||
Sbjct 255 TATGGCTCAGGCTGTAGAAGAATGGTATAAACAGATGCCGATTATCACTCGCTCTTATCT 314
Query 243 CACGGCGGCTG-TAGTCACCACCGTCGGATGTTCGCTCGAGATTATATCTCCTTATAATC 301
||||||||||| || ||||||||||||||||||| ||||| || |||||||| ||||| |
Sbjct 315 CACGGCGGCTGTTA-TCACCACCGTCGGATGTTCCCTCGATATCATATCTCCATATAACC 373
Query 302 TCTACCTAAATCCTACCCTTGTGGTGAAGCAATACCAGT-TCTGGCGTCTTGTTACAAAT 360
| || | ||||| || |||||||||||||||||||| | | |||||||| ||||| |||
Sbjct 374 TTTATTTGAATCCGACACTTGTGGTGAAGCAATACCAATAT-TGGCGTCTCGTTACTAAT 432
Query 361 TTCCTT-TATTTCCGAAAGATGGATTTGGACTTTTTGTTCCATATGTTTTTTCTAGCTCG 419
|| ||| |||||||| ||||||||||||||||| ||||||||||||| ||||| || ||
Sbjct 433 TT-CTTGTATTTCCGGAAGATGGATTTGGACTTCATGTTCCATATGTTCTTTCTCGCACG 491
Query 420 ATACTGCAAACTACTCGAAGAAAACTCCTTCAGGGGAAAGACTGCGGATTTCCTTTACAT 479
|||||||||||| || ||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct 492 ATACTGCAAACTCCTTGAAGAAAACTCATTCAGGGGAAAGACTGCTGATTTCCTATACAT 551
Query 480 GCTCTTATTCGGGGCAACTGTTCTAACTGGTATTGTTCTCATCGGCGGAATGATACCTTA 539
|||| |||| || ||| ||||| |||| |||||||| || ||||| ||||||||||| ||
Sbjct 552 GCTCCTATTTGGAGCATCTGTTTTAACCGGTATTGTACTTATCGGTGGAATGATACCATA 611
Query 540 TTTGTCAGTGTCATTCT-CCAAAATCATCTTCCTCAGCAATTCATTGACTTTCATGATGG 598
||||||| ||||| | | |||||||||||||||||||| ||||| |||||||||||||
Sbjct 612 CTTGTCAGCATCATT-TGCTAAAATCATCTTCCTCAGCAACTCATTAACTTTCATGATGG 670
Query 599 TCTATGTATGGAGTAAACAAAATCCTTACATCCATATGAGTTTCCTTGGCCTTTTCACTT 658
||||||||||||| |||||||||||||| || || |||||||||||||| || ||||| |
Sbjct 671 TCTATGTATGGAGCAAACAAAATCCTTATATTCACATGAGTTTCCTTGGTCTGTTCACCT 730
Query 659 TCACAGCAGCGTATTTACCATGGGTACTTCTTGGGTTCTCAATCCTTGTTGGTGCAAGTG 718
|||||||||| || |||||||||| |||||||| ||||| |||||||||||||| ||||
Sbjct 731 TCACAGCAGCTTACCTACCATGGGTGCTTCTTGGCTTCTCTATCCTTGTTGGTGCCAGTG 790
Query 719 CTTGGG-GAGAT-TTTCTGGGAATGATAGCGGGTCATGCATACTAC-TTCTTAGCGT-TT 774
|||||| | ||| ||| |||| |||||||| ||||| || |||||| ||| | || |
Sbjct 791 CTTGGGTG-GATCTTT-TGGGTATGATAGCAGGTCACGCTTACTACTTTC-TGGC-TGAG 846
Query 775 GTGTATCCACGAATGACGGATCGACGTCCCTTGAAGACTCCATCTTTCCTCAAAGCCCTA 834
|| ||||| |||||||| |||| ||||| || ||||||||||| ||||||||||| ||
Sbjct 847 GTTTATCCGCGAATGACTAATCGTCGTCCATTAAAGACTCCATCATTCCTCAAAGCGTTA 906
Query 835 TTTGCTGATGAGCCAGTCGTGATTGCACGGCCAGAAGATGTGAGGTTTGCT-CATGCGCC 893
||||| ||||| ||||| ||| ||||||||||||||||||||||||||||| | ||||||
Sbjct 907 TTTGCAGATGAACCAGTTGTGGTTGCACGGCCAGAAGATGTGAGGTTTGCTGC-TGCGCC 965
Query 894 TTTTGATGAAATCCACCAAGACTGAATCT 922
||| ||||||||||||||||||||| |||
Sbjct 966 TTTCGATGAAATCCACCAAGACTGATTCT 994
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55823006040
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5