BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492695
Length=1381
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21800.1 | Symbols: QQT2 | P-loop containing nucleoside trip... 2139 0.0
> AT4G21800.1 | Symbols: QQT2 | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr4:11572790-11575145
FORWARD LENGTH=1393
Length=1393
Score = 2139 bits (1158), Expect = 0.0
Identities = 1306/1373 (95%), Gaps = 28/1373 (2%)
Strand=Plus/Plus
Query 13 TGTTTTCCTT-GACGACTGAGATAAAATCTTCATACAAGAAAAGAAAAAGGC-AATTTTG 70
|||||| ||| |||||||||||||||| |||||||||| | ||||| || ||||| |
Sbjct 25 TGTTTT-CTTCGACGACTGAGATAAAAGATTCATACAAG---A-AAAAA-GCAAATTTCG 78
Query 71 CCACTGATGGATCCTATGGAGTCGTCTAGTGAACAGGACATTGTTGAAGAGAGTCAAAAG 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 79 CCACTGATGGATCCTATGGAGTCGTCTAGTGAACAGGACATTGTTGAAGAGAGTCAAAAG 138
Query 131 CTGGTTGACTCATTGGACAACCTTCGTGTTAGTGCTGCCAGTTCATCTTCTAATTTCAAG 190
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 139 CTGGTTGACTCATTGGACAAGCTTCGTGTTAGTGCTGCGAGTTCATCTTCTAATTTCAAG 198
Query 191 AAGAAGCCTATCATTATTATTGTTGTTGGAATGGCAGGTAGCGGAAAAACTAGCTTCCTT 250
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct 199 AAGAAGCCTATCATTATTATCGTTGTTGGAATGGCAGGTAGTGGAAAAACTAGCTTTCTT 258
Query 251 CATCGCTTGGTCTGTCATACTTTTGATTCAAAGAGCCGTGGGTATGTGGTGAACCTTGAC 310
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 259 CATCGCTTGGTCTGTCATACTTTTGATTCAAAGAGCCATGGTTATGTGGTGAACCTTGAC 318
Query 311 CCTGCTGTTATGTCTCTACCATTTGGTGCCAACATCGATATAAGAGACACTGTTAAGTAC 370
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 319 CCTGCTGTTATGTCTCTACCATTTGGTGCCAACATCGATATAAGAGACACTGTCAAGTAC 378
Query 371 AAGGAAGTTATGAAGCAGTACAATCTGGGGCCTAATGGTGGAATTCTCACGTCACTCAAC 430
|||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||
Sbjct 379 AAGGAAGTTATGAAGCAGTATAATCTGGGTCCTAATGGTGGAATTCTCACTTCACTCAAC 438
Query 431 TTGTTTGCTACTAAATTCGACGAGGTTGTCTCTGTGATTGAGAAACGTGCAGACCAGCTT 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 439 TTGTTTGCTACTAAATTCGACGAGGTTGTCTCTGTGATTGAGAAACGTGCAGACCAGCTT 498
Query 491 GATTATGTCCTTGTGGACACTCCTGGTCAGATTGAAATCTTTACATGGTCTGCTTCTGGG 550
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 499 GATTATGTTCTTGTGGACACTCCTGGTCAGATTGAGATCTTTACATGGTCTGCTTCTGGG 558
Query 551 GCTATAATCACTGAAGCTTTCGCTTCAACCTTCCCCACTGTTGTCACCTATGTGGTTGAT 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 559 GCTATAATCACTGAAGCTTTCGCTTCAACCTTCCCCACTGTTGTCACCTATGTGGTTGAT 618
Query 611 AC-CCCACGTTCCTCGAGCCCAATCACTTTTATGAGCAACATGCTCTACGCTTGTAGTAT 669
|| ||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 619 ACTCCC-CGTTCCTCAAGCCCAATCACTTTTATGAGCAACATGCTTTACGCTTGTAGTAT 677
Query 670 TCTCTACAAGACTCGGTTGCCTCTTGTCTTGGCTTTCAACAAAACCGATGTGGCTGATCA 729
||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 678 TCTCTACAAGACTCGGTTGCCTCTTGTCTTGGCTTTCAACAAAACTGATGTCGCAGATCA 737
Query 730 CAAGTTTGCTTTAGAGTGGATGGAAGATTTCGAGGTCTTTCAAGCAGCGATACAGACTGA 789
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 738 CAAGTTTGCTTTAGAGTGGATGGAAGATTTCGAGGTCTTTCAAGCAGCGATTCAGTCTGA 797
Query 790 TAACTCGTACACGGCGACCTTAGCTAACAGTCTCTCCCTTTCACTCTACGAGTTCTACCG 849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 798 TAACTCGTACACGGCGACCTTAGCTAACAGTCTCTCCCTTTCACTCTACGAGTTCTACCG 857
Query 850 GAATATAAGATCTGTTGGTGTTTCTGCAATCTCTGGTGCTGGAATGGATGGCTTCTTCAA 909
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 858 TAACATAAGATCCGTTGGTGTTTCTGCAATCTCTGGTGCTGGAATGGATGGCTTCTTTAA 917
Query 910 AGCCATTGAAGCAAGTGCTGAGGAATACATGGAAACTTACAAGGCTGATCTTGATATGAG 969
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 918 AGCCATTGAAGCAAGTGCTGAGGAATACATGGAAACTTACAAGGCTGATCTTGACATGAG 977
Query 970 AAAGGCGGACAAGGAGCGGTTGGAAGAAGAACGAAAGAAACATGAAATGGAGAAACTAAG 1029
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 978 AAAGGCGGACAAGGAGCGGTTGGAAGAAGAAAGAAAGAAACATGAAATGGAAAAACTAAG 1037
Query 1030 AAAGGATATGGAGAGTTCTCAGGGAGGCACTGTGGTTTTAAACACTGGTTTGAAAGACAG 1089
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1038 AAAGGATATGGAGAGTTCTCAGGGAGGCACTGTGGTTTTAAACACTGGTTTGAAAGACAG 1097
Query 1090 AGATGCAACAGAGAAGATGATGCTAGAGGAGGATGATGAGGACTTTCAGGTtgaagatga 1149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1098 AGATGCAACAGAGAAGATGATGCTAGAGGAGGATGATGAGGACTTTCAGGTTGAAGATGA 1157
Query 1150 agaagacagtgatgatgccatagatgaggatgatgaagatgacgagatgaaACATTACTA 1209
||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||
Sbjct 1158 AGAAGACAGTGATGATGCCATAGATGAGGATGATGAAGACGACGAGACGAAGCATTACTA 1217
Query 1210 CCTATGAATTAAACTCGAAGACCAAATCGTTCAGACTTATCAAGATGCTTTTACTGGTTT 1269
|||||||||||||||| ||||||| | | |||||||||| |||| |||||||||
Sbjct 1218 CCTATGAATTAAACTCAAAGACCA----G----G-CTTATCAAGACGCTTGTACTGGTTT 1268
Query 1270 TGTTTGCGTCTTTCCCTTGTTGTCCCAGTTGTGTAGTTAAAACTTAAAACATAAGAATTG 1329
|||||||||| |||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1269 TGTTTGCGTCCTTCCCTTGTTGTCCCAGTTGTGTAGTTAAAAC--A-----TAAGAATTG 1321
Query 1330 AATCTCTTTGTGAGACATTGTCAAATGATCTAATGACTGAA-CTATAAACTAG 1381
| |||||||||||||||||||| |||||||||||||| ||| |||||||||||
Sbjct 1322 ATTCTCTTTGTGAGACATTGTCTAATGATCTAATGAC-GAAACTATAAACTAG 1373
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68021738475
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5